Wall clock time and date at job start Sat Apr 11 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39632 * 120.48685 * 112.93035 * 3 2 1 5 5 N 1.31763 * 120.88055 * 180.02562 * 4 3 2 6 6 C 1.31728 * 122.03933 * 359.97438 * 5 4 3 7 7 C 1.39602 * 120.88091 * 0.02562 * 6 5 4 8 8 C 1.47855 * 120.49489 * 179.97438 * 7 6 5 9 9 O 1.21549 * 119.99889 * 45.60494 * 8 7 6 10 10 N 1.34773 * 119.99938 * 225.61365 * 8 7 6 11 11 C 1.43514 * 122.55195 * 355.71740 * 10 8 7 12 12 C 1.51715 * 114.25871 * 122.92591 * 11 10 8 13 13 C 1.51153 * 111.89296 * 82.64434 * 12 11 10 14 14 H 1.09003 * 110.23131 * 34.31523 * 13 12 11 15 15 C 1.53391 * 110.93493 * 156.74752 * 13 12 11 16 16 N 1.46604 * 108.10955 * 102.74338 * 15 13 12 17 17 C 1.36932 * 125.31717 * 178.64891 * 16 15 13 18 18 H 1.08005 * 120.00301 * 346.53667 * 17 16 15 19 19 C 1.38811 * 120.00368 * 166.53351 * 17 16 15 20 20 N 1.31622 * 119.99547 * 349.68502 * 19 17 16 21 21 Si 1.86793 * 120.00643 * 169.67798 * 19 17 16 22 22 H 1.48508 * 109.46981 * 94.96519 * 21 19 17 23 23 H 1.48498 * 109.47526 * 214.96994 * 21 19 17 24 24 H 1.48506 * 109.46989 * 334.97268 * 21 19 17 25 25 C 1.46656 * 109.36319 * 358.65017 * 16 15 13 26 26 C 1.54188 * 106.90260 * 18.25212 * 25 16 15 27 27 H 1.09006 * 111.45271 * 91.57816 * 26 25 16 28 28 C 1.51845 * 109.37205 * 214.09886 * 26 25 16 29 29 C 1.49544 * 122.55056 * 175.69154 * 10 8 7 30 30 C 1.39674 * 120.49215 * 293.20800 * 3 2 1 31 31 H 4.52733 * 13.92863 * 359.97438 * 4 2 1 32 32 H 1.08001 * 119.56375 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.56042 * 180.02562 * 6 5 4 34 34 H 1.09005 * 108.52063 * 244.15969 * 11 10 8 35 35 H 1.08991 * 108.52407 * 1.83840 * 11 10 8 36 36 H 1.09008 * 108.99926 * 203.26366 * 12 11 10 37 37 H 1.08996 * 108.99825 * 322.09881 * 12 11 10 38 38 H 1.09003 * 109.74197 * 222.41033 * 15 13 12 39 39 H 1.08997 * 109.74779 * 343.06679 * 15 13 12 40 40 H 0.96997 * 120.00045 * 179.97438 * 20 19 17 41 41 H 1.09007 * 109.96768 * 137.64973 * 25 16 15 42 42 H 1.09002 * 109.96511 * 258.86740 * 25 16 15 43 43 H 1.09000 * 109.00542 * 54.38542 * 28 26 25 44 44 H 1.08999 * 109.01076 * 295.52423 * 28 26 25 45 45 H 1.09001 * 110.26997 * 131.25909 * 29 10 8 46 46 H 1.08995 * 110.39094 * 9.22470 * 29 10 8 47 47 H 1.08007 * 120.92028 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3142 0.4698 -1.1082 5 7 4.6318 0.4734 -1.1167 6 6 5.3384 0.0405 -0.0928 7 6 4.7117 -0.4457 1.0560 8 6 5.5133 -0.9300 2.2001 9 8 6.4616 -0.2808 2.5959 10 7 5.1926 -2.0914 2.8040 11 6 4.0337 -2.8562 2.4411 12 6 4.3347 -4.2825 2.0207 13 6 4.4842 -5.2015 3.2114 14 1 3.8095 -4.8952 4.0109 15 6 4.2134 -6.6587 2.8166 16 7 5.5031 -7.3453 2.6959 17 6 5.6694 -8.6682 2.3837 18 1 4.8254 -9.3413 2.4171 19 6 6.9229 -9.1443 2.0244 20 7 7.9039 -8.2998 1.7858 21 14 7.2174 -10.9831 1.8795 22 1 7.0431 -11.4025 0.4655 23 1 8.5988 -11.2997 2.3230 24 1 6.2443 -11.7092 2.7346 25 6 6.5871 -6.3941 2.9618 26 6 5.9606 -5.1963 3.7036 27 1 6.0051 -5.3293 4.7846 28 6 6.6751 -3.9206 3.2941 29 6 6.0175 -2.6816 3.9029 30 6 3.3149 -0.4733 1.1062 31 1 -1.0501 -0.0006 0.0002 32 1 2.7748 0.8337 -1.9702 33 1 6.4171 0.0621 -0.1426 34 1 3.3551 -2.8823 3.2937 35 1 3.5312 -2.3527 1.6153 36 1 3.5220 -4.6462 1.3917 37 1 5.2606 -4.2951 1.4458 38 1 3.6093 -7.1421 3.5844 39 1 3.6887 -6.6901 1.8617 40 1 8.7799 -8.6324 1.5350 41 1 7.3485 -6.8623 3.5857 42 1 7.0289 -6.0612 2.0226 43 1 6.6549 -3.8355 2.2076 44 1 7.7119 -3.9719 3.6266 45 1 5.3818 -2.9652 4.7417 46 1 6.7781 -1.9725 4.2295 47 1 2.7983 -0.8469 1.9780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946770721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:04 Heat of formation + Delta-G solvation = 77.028061 kcal Electronic energy + Delta-G solvation = -29415.619611 eV Core-core repulsion = 25565.192027 eV Total energy + Delta-G solvation = -3850.427584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.13295 -40.90154 -39.71852 -37.40382 -35.39529 -34.99019 -34.09526 -33.04001 -32.41483 -31.57591 -29.17031 -28.96062 -26.51757 -25.49631 -25.27381 -24.24399 -23.67496 -21.99929 -21.45492 -19.84517 -19.48226 -18.88941 -18.35414 -18.14375 -17.74055 -17.16152 -16.85856 -16.47576 -16.19064 -15.76995 -15.57330 -15.09903 -15.02052 -14.92169 -14.77001 -14.37126 -14.25985 -13.85210 -13.66697 -13.57182 -13.37756 -13.17784 -12.87032 -12.70545 -12.66696 -12.50498 -12.35206 -12.11715 -11.84447 -11.79228 -11.78712 -11.53699 -11.33785 -11.25636 -11.04642 -10.77967 -10.65714 -10.49403 -9.91232 -9.72480 -8.80723 -7.89017 -5.25101 -0.52710 -0.20976 1.42335 1.43828 1.45028 1.54931 1.68835 1.82424 2.07438 2.48535 2.82451 3.06351 3.29058 3.34901 3.44572 3.60331 3.64821 3.67518 3.70039 3.82253 3.92492 4.02790 4.13976 4.17338 4.24625 4.33892 4.45173 4.61153 4.67029 4.70027 4.71693 4.75193 4.80677 4.89647 4.97535 5.03627 5.04038 5.08915 5.11414 5.20066 5.27985 5.37412 5.42631 5.50484 5.59492 5.70375 5.80428 6.22207 6.33538 6.53478 6.70449 6.91679 7.09964 7.80558 8.44599 9.21990 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.002792 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.393065 B =10026.528623 C =10566.134410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.205 4.205 3 C -0.039 4.039 4 C 0.139 3.861 5 N -0.496 5.496 6 C 0.146 3.854 7 C -0.182 4.182 8 C 0.572 3.428 9 O -0.567 6.567 10 N -0.596 5.596 11 C 0.097 3.903 12 C -0.121 4.121 13 C -0.077 4.077 14 H 0.109 0.891 15 C 0.133 3.867 16 N -0.622 5.622 17 C -0.246 4.246 18 H 0.078 0.922 19 C -0.064 4.064 20 N -0.947 5.947 21 Si 0.975 3.025 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.267 1.267 25 C 0.193 3.807 26 C -0.093 4.093 27 H 0.082 0.918 28 C -0.118 4.118 29 C 0.123 3.877 30 C -0.023 4.023 31 H 0.263 0.737 32 H 0.189 0.811 33 H 0.165 0.835 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.029 0.971 39 H 0.019 0.981 40 H 0.246 0.754 41 H 0.004 0.996 42 H -0.004 1.004 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.110 0.890 46 H 0.087 0.913 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.452 18.989 0.551 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.206 4.206 3 C -0.041 4.041 4 C -0.019 4.019 5 N -0.203 5.203 6 C -0.011 4.011 7 C -0.188 4.188 8 C 0.360 3.640 9 O -0.447 6.447 10 N -0.327 5.327 11 C -0.027 4.027 12 C -0.160 4.160 13 C -0.095 4.095 14 H 0.127 0.873 15 C 0.008 3.992 16 N -0.348 5.348 17 C -0.376 4.376 18 H 0.096 0.904 19 C -0.257 4.257 20 N -0.595 5.595 21 Si 0.803 3.197 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.191 1.191 25 C 0.067 3.933 26 C -0.113 4.113 27 H 0.101 0.899 28 C -0.156 4.156 29 C 0.003 3.997 30 C -0.049 4.049 31 H 0.279 0.721 32 H 0.206 0.794 33 H 0.182 0.818 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.037 0.963 40 H 0.055 0.945 41 H 0.023 0.977 42 H 0.014 0.986 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.128 0.872 46 H 0.106 0.894 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.354 19.522 -0.044 24.837 hybrid contribution 0.551 -1.808 0.223 1.904 sum -14.803 17.714 0.179 23.086 Atomic orbital electron populations 1.25855 0.96406 0.95439 0.95497 1.19671 0.91615 1.04542 1.04792 1.16893 0.89085 1.02371 0.95751 1.23608 0.89238 0.91811 0.97249 1.67817 1.08600 1.16081 1.27826 1.23047 1.01154 0.89931 0.86987 1.20754 0.94873 1.06111 0.97018 1.18124 0.83396 0.80549 0.81885 1.90782 1.30832 1.57403 1.65717 1.47969 1.28052 1.20711 1.35930 1.21278 0.87122 0.91283 1.02977 1.21411 1.02270 0.94373 0.97919 1.21754 0.96185 0.93350 0.98238 0.87270 1.21402 0.87959 0.92312 0.97509 1.44487 1.02134 1.06567 1.81615 1.19391 0.95108 0.84601 1.38451 0.90413 1.25705 0.96691 1.02154 1.01196 1.70192 1.02332 1.33922 1.53029 0.85128 0.76928 0.79975 0.77695 1.21352 1.22092 1.19129 1.20806 0.89633 0.87981 0.94831 1.22226 0.95264 0.94038 0.99755 0.89942 1.21746 0.99494 0.93541 1.00825 1.22297 0.95276 0.93229 0.88939 1.22105 0.91609 0.92519 0.98624 0.72094 0.79436 0.81755 0.88133 0.88838 0.90002 0.93660 0.95304 0.96313 0.94478 0.97708 0.98599 0.92649 0.92101 0.87208 0.89417 0.81352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 19.25 74.32 1.43 0.43 16 2 C -0.21 -2.87 13.27 30.02 0.40 -2.47 16 3 C -0.04 -0.65 5.73 -21.35 -0.12 -0.78 16 4 C 0.14 2.43 10.91 85.04 0.93 3.36 16 5 N -0.50 -11.01 10.33 -193.75 -2.00 -13.01 16 6 C 0.15 3.39 10.85 85.04 0.92 4.31 16 7 C -0.18 -4.05 5.27 -20.03 -0.11 -4.15 16 8 C 0.57 14.89 7.37 86.79 0.64 15.53 16 9 O -0.57 -18.67 16.68 -3.87 -0.06 -18.73 16 10 N -0.60 -13.49 2.61 -827.22 -2.16 -15.65 16 11 C 0.10 1.78 4.82 86.51 0.42 2.20 16 12 C -0.12 -3.09 4.77 29.57 0.14 -2.95 16 13 C -0.08 -2.19 2.78 -10.36 -0.03 -2.22 16 14 H 0.11 2.31 7.68 -2.39 -0.02 2.29 16 15 C 0.13 5.15 6.82 86.49 0.59 5.74 16 16 N -0.62 -31.77 3.37 -698.25 -2.36 -34.13 16 17 C -0.25 -13.91 10.19 84.03 0.86 -13.06 16 18 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 19 C -0.06 -3.68 5.38 84.86 0.46 -3.22 16 20 N -0.95 -58.07 10.78 21.65 0.23 -57.84 16 21 Si 0.97 46.18 29.57 68.60 2.03 48.20 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C 0.19 9.40 4.84 86.75 0.42 9.82 16 26 C -0.09 -3.13 2.93 -9.86 -0.03 -3.16 16 27 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 28 C -0.12 -3.52 4.50 30.19 0.14 -3.38 16 29 C 0.12 2.83 6.17 85.76 0.53 3.36 16 30 C -0.02 -0.40 7.29 22.99 0.17 -0.23 16 31 H 0.26 -0.07 7.80 -4.41 -0.03 -0.10 16 32 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.10 1.29 7.68 -2.38 -0.02 1.27 16 35 H 0.09 1.53 3.97 -2.39 -0.01 1.52 16 36 H 0.08 1.97 7.53 -2.38 -0.02 1.95 16 37 H 0.04 1.48 5.86 -2.39 -0.01 1.47 16 38 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.02 0.74 7.40 -2.39 -0.02 0.72 16 40 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.00 0.25 7.49 -2.38 -0.02 0.23 16 42 H 0.00 -0.22 7.24 -2.39 -0.02 -0.24 16 43 H 0.05 1.91 5.47 -2.39 -0.01 1.89 16 44 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.11 1.94 7.81 -2.39 -0.02 1.92 16 46 H 0.09 2.14 7.31 -2.39 -0.02 2.12 16 47 H 0.17 2.14 6.62 -2.91 -0.02 2.12 16 Total: -1.00 -76.93 374.38 4.41 -72.52 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.99 Total: 9.52 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 7.75 Total: 9.13 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -6.29 Total: -120.64 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.06 Total: -18.73 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -76.93 4.41 -72.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946770721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.547 kcal (2) G-P(sol) polarization free energy of solvation -76.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds