Wall clock time and date at job start Sat Apr 11 2020 05:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.43210 * 179.97438 * 2 1 4 4 C 1.39727 * 119.58685 * 118.37660 * 3 2 1 5 5 C 1.37983 * 119.19652 * 179.72141 * 4 3 2 6 6 C 1.40234 * 118.39855 * 0.53450 * 5 4 3 7 7 C 1.47667 * 120.43836 * 179.75611 * 6 5 4 8 8 O 1.21579 * 120.00125 * 45.31122 * 7 6 5 9 9 N 1.34775 * 120.00198 * 225.30893 * 7 6 5 10 10 C 1.43511 * 122.55079 * 355.72767 * 9 7 6 11 11 C 1.51722 * 114.25920 * 122.92200 * 10 9 7 12 12 C 1.51148 * 111.88657 * 82.64389 * 11 10 9 13 13 H 1.09003 * 110.23197 * 34.32082 * 12 11 10 14 14 C 1.53401 * 110.93185 * 156.74627 * 12 11 10 15 15 N 1.46606 * 108.10725 * 102.74320 * 14 12 11 16 16 C 1.36939 * 125.31557 * 178.65106 * 15 14 12 17 17 H 1.07992 * 120.00542 * 346.55221 * 16 15 14 18 18 C 1.38819 * 119.99505 * 166.55376 * 16 15 14 19 19 N 1.31616 * 120.00130 * 349.65498 * 18 16 15 20 20 Si 1.86797 * 119.99642 * 169.65362 * 18 16 15 21 21 H 1.48499 * 109.47331 * 94.96372 * 20 18 16 22 22 H 1.48505 * 109.47124 * 214.96701 * 20 18 16 23 23 H 1.48506 * 109.47163 * 334.96376 * 20 18 16 24 24 C 1.46659 * 109.36588 * 358.65246 * 15 14 12 25 25 C 1.54198 * 106.90110 * 18.25189 * 24 15 14 26 26 H 1.09004 * 111.44983 * 91.57681 * 25 24 15 27 27 C 1.51844 * 109.37101 * 214.10181 * 25 24 15 28 28 C 1.49554 * 122.55292 * 175.70049 * 9 7 6 29 29 C 1.39658 * 119.12201 * 359.48848 * 6 5 4 30 30 N 1.31484 * 120.70774 * 0.24509 * 29 6 5 31 31 H 4.51266 * 14.17533 * 0.02562 * 4 2 1 32 32 H 1.07998 * 120.40051 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.79563 * 180.26948 * 5 4 3 34 34 H 1.09001 * 108.52760 * 244.16177 * 10 9 7 35 35 H 1.09001 * 108.52623 * 1.84076 * 10 9 7 36 36 H 1.08997 * 108.99918 * 203.26506 * 11 10 9 37 37 H 1.08999 * 108.99487 * 322.10011 * 11 10 9 38 38 H 1.08998 * 109.74587 * 222.41294 * 14 12 11 39 39 H 1.08992 * 109.74697 * 343.07305 * 14 12 11 40 40 H 0.96999 * 119.99478 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.96843 * 137.64575 * 24 15 14 42 42 H 1.09001 * 109.96736 * 258.86658 * 24 15 14 43 43 H 1.08998 * 109.00751 * 54.38266 * 27 25 24 44 44 H 1.09001 * 109.00456 * 295.51794 * 27 25 24 45 45 H 1.09001 * 110.26287 * 131.26071 * 28 9 7 46 46 H 1.09002 * 110.38463 * 9.22800 * 28 9 7 47 47 H 1.07993 * 119.64502 * 180.23015 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.2957 0.5784 -1.0691 5 6 4.6755 0.5797 -1.0580 6 6 5.3343 -0.0134 0.0285 7 6 6.8097 -0.0421 0.0838 8 8 7.4476 0.9578 -0.1836 9 7 7.4492 -1.1766 0.4307 10 6 6.7515 -2.3610 0.8432 11 6 7.0643 -3.5904 0.0109 12 6 8.3389 -4.2664 0.4614 13 1 8.4528 -4.1748 1.5416 14 6 8.3508 -5.7440 0.0493 15 7 9.2236 -5.8838 -1.1203 16 6 9.5070 -7.0607 -1.7604 17 1 9.2595 -8.0026 -1.2935 18 6 10.1126 -7.0431 -3.0094 19 7 10.2299 -5.9097 -3.6680 20 14 10.7610 -8.6282 -3.7553 21 1 9.7319 -9.2096 -4.6542 22 1 11.9929 -8.3414 -4.5335 23 1 11.0739 -9.5937 -2.6712 24 6 9.7456 -4.5663 -1.4978 25 6 9.5595 -3.6436 -0.2765 26 1 10.4402 -3.6498 0.3657 27 6 9.2569 -2.2336 -0.7520 28 6 8.9397 -1.2973 0.4146 29 6 4.5767 -0.5717 1.0604 30 7 3.2627 -0.5487 1.0168 31 1 -1.0500 0.0002 0.0007 32 1 2.7553 1.0223 -1.8921 33 1 5.2345 1.0231 -1.8688 34 1 7.0091 -2.5708 1.8814 35 1 5.6800 -2.1697 0.7853 36 1 6.2386 -4.2966 0.0970 37 1 7.1706 -3.2947 -1.0328 38 1 8.7336 -6.3519 0.8691 39 1 7.3403 -6.0635 -0.2050 40 1 10.6527 -5.8975 -4.5409 41 1 10.8035 -4.6431 -1.7493 42 1 9.1884 -4.1750 -2.3490 43 1 8.4014 -2.2624 -1.4268 44 1 10.1217 -1.8478 -1.2918 45 1 9.2938 -1.7279 1.3513 46 1 9.3979 -0.3219 0.2512 47 1 5.0753 -1.0274 1.9030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946863914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:12 Heat of formation + Delta-G solvation = 99.774995 kcal Electronic energy + Delta-G solvation = -29255.310815 eV Core-core repulsion = 25405.869612 eV Total energy + Delta-G solvation = -3849.441203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.20878 -39.85348 -38.47909 -36.03374 -34.38430 -33.17800 -32.93850 -32.45132 -31.10349 -30.59136 -27.71212 -27.47177 -25.46380 -24.29808 -24.00503 -22.96567 -22.56135 -20.22384 -19.97321 -19.79250 -18.39297 -17.87163 -17.07573 -16.85657 -16.42219 -16.21318 -15.41712 -15.10279 -14.83990 -14.59211 -14.27315 -14.13272 -13.95658 -13.66081 -13.56001 -13.20608 -12.94310 -12.75629 -12.55804 -12.28160 -11.82253 -11.65704 -11.46021 -11.32067 -11.26100 -11.12556 -10.91889 -10.80277 -10.66132 -10.39283 -10.30970 -10.02786 -10.01098 -9.78773 -9.75910 -9.71407 -9.57272 -9.13823 -8.73006 -8.53926 -6.75171 -5.75366 -3.09201 0.06074 0.81211 2.21347 2.23535 2.61309 2.90039 3.38383 3.44521 3.46512 3.49841 3.59524 4.20595 4.23873 4.43680 4.49526 4.64310 4.72425 4.74922 4.98785 5.01513 5.13956 5.24363 5.26122 5.33806 5.38471 5.47498 5.54658 5.61463 5.63288 5.66039 5.73142 5.81626 5.96092 6.04662 6.10286 6.13445 6.27804 6.36777 6.40644 6.52784 6.59707 6.66013 6.76813 7.01866 7.02983 7.33474 7.39134 7.46414 7.65262 7.78441 7.92987 8.28477 9.21028 9.83129 10.50212 11.37116 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.002675 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.609438 B =10465.522477 C =11247.736446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.151 4.151 3 C 0.241 3.759 4 C -0.148 4.148 5 C -0.021 4.021 6 C -0.170 4.170 7 C 0.570 3.430 8 O -0.533 6.533 9 N -0.598 5.598 10 C 0.092 3.908 11 C -0.128 4.128 12 C -0.090 4.090 13 H 0.067 0.933 14 C 0.141 3.859 15 N -0.599 5.599 16 C -0.232 4.232 17 H 0.074 0.926 18 C -0.005 4.005 19 N -0.915 5.915 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.183 3.817 25 C -0.109 4.109 26 H 0.068 0.932 27 C -0.127 4.127 28 C 0.115 3.885 29 C 0.136 3.864 30 N -0.470 5.470 31 H 0.231 0.769 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.020 0.980 39 H 0.021 0.979 40 H 0.252 0.748 41 H 0.047 0.953 42 H 0.036 0.964 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 13.801 9.277 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.152 4.152 3 C 0.106 3.894 4 C -0.168 4.168 5 C -0.047 4.047 6 C -0.175 4.175 7 C 0.357 3.643 8 O -0.410 6.410 9 N -0.330 5.330 10 C -0.032 4.032 11 C -0.166 4.166 12 C -0.109 4.109 13 H 0.085 0.915 14 C 0.015 3.985 15 N -0.325 5.325 16 C -0.361 4.361 17 H 0.092 0.908 18 C -0.202 4.202 19 N -0.562 5.562 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.058 3.942 25 C -0.129 4.129 26 H 0.086 0.914 27 C -0.165 4.165 28 C -0.005 4.005 29 C -0.023 4.023 30 N -0.178 5.178 31 H 0.247 0.753 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.108 0.892 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -13.817 13.913 9.620 21.841 hybrid contribution 0.654 -0.680 -1.192 1.520 sum -13.163 13.232 8.428 20.479 Atomic orbital electron populations 1.24973 0.95646 0.96832 0.97683 1.19264 0.91011 1.02679 1.02234 1.16713 0.88204 0.93991 0.90444 1.22010 0.94319 1.00997 0.99426 1.21589 0.93714 0.92753 0.96614 1.21086 0.94938 1.03151 0.98328 1.17860 0.86302 0.82934 0.77183 1.90807 1.67488 1.33232 1.49502 1.47950 1.08357 1.11091 1.65606 1.21224 0.97337 0.85725 0.98907 1.21483 0.98281 0.95533 1.01299 1.21751 0.94354 0.96124 0.98685 0.91457 1.21140 0.94141 0.92472 0.90733 1.44152 1.52289 1.04266 1.31827 1.18988 1.34728 0.84202 0.98145 0.90797 1.24860 1.02122 0.97078 0.96184 1.69974 1.48144 1.24340 1.13708 0.86164 0.78345 0.82652 0.78967 1.21621 1.21625 1.20582 1.21049 0.98673 0.83301 0.91160 1.22399 0.96840 0.94241 0.99374 0.91403 1.21871 1.02602 0.94608 0.97442 1.22367 0.77548 1.00890 0.99724 1.23071 0.88611 0.93390 0.97245 1.67772 1.09484 1.15962 1.24550 0.75252 0.83489 0.83183 0.91310 0.90163 0.90824 0.90391 0.96235 0.96078 0.93765 0.93514 0.94618 0.90635 0.91296 0.90057 0.89180 0.81121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 19.25 29.55 0.57 -0.37 16 2 C -0.15 -1.50 13.43 -38.83 -0.52 -2.02 16 3 C 0.24 2.64 6.59 -84.91 -0.56 2.08 16 4 C -0.15 -1.37 9.77 -39.12 -0.38 -1.75 16 5 C -0.02 -0.21 9.83 -38.93 -0.38 -0.59 16 6 C -0.17 -1.94 5.28 -104.77 -0.55 -2.49 16 7 C 0.57 7.56 7.36 -12.41 -0.09 7.47 16 8 O -0.53 -8.66 16.68 5.30 0.09 -8.57 16 9 N -0.60 -7.30 2.61 -175.48 -0.46 -7.76 16 10 C 0.09 1.00 4.79 -6.27 -0.03 0.97 16 11 C -0.13 -1.76 4.77 -28.31 -0.14 -1.89 16 12 C -0.09 -1.41 2.78 -89.94 -0.25 -1.66 16 13 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 14 C 0.14 2.83 6.82 -3.78 -0.03 2.80 16 15 N -0.60 -15.03 3.38 -172.04 -0.58 -15.61 16 16 C -0.23 -6.44 10.19 -15.06 -0.15 -6.60 16 17 H 0.07 2.00 7.85 -52.49 -0.41 1.59 16 18 C -0.01 -0.15 5.38 -17.43 -0.09 -0.24 16 19 N -0.92 -26.75 10.78 55.49 0.60 -26.15 16 20 Si 0.91 22.00 29.57 -169.99 -5.03 16.97 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.18 4.27 4.84 -3.33 -0.02 4.25 16 25 C -0.11 -1.86 2.93 -89.18 -0.26 -2.12 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 C -0.13 -1.89 4.50 -27.36 -0.12 -2.01 16 28 C 0.12 1.43 6.17 -2.39 -0.01 1.42 16 29 C 0.14 1.44 8.61 -17.17 -0.15 1.29 16 30 N -0.47 -5.54 10.26 -10.78 -0.11 -5.65 16 31 H 0.23 0.62 7.80 -54.09 -0.42 0.19 16 32 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.07 0.64 7.68 -51.93 -0.40 0.24 16 35 H 0.08 0.80 3.99 -51.93 -0.21 0.59 16 36 H 0.07 0.99 7.53 -51.93 -0.39 0.59 16 37 H 0.08 1.27 5.86 -51.93 -0.30 0.96 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.43 7.40 -51.93 -0.38 0.05 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.05 1.22 7.49 -51.93 -0.39 0.84 16 42 H 0.04 0.93 7.24 -51.93 -0.38 0.55 16 43 H 0.08 1.24 5.47 -51.93 -0.28 0.96 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.08 0.89 7.81 -51.93 -0.41 0.48 16 46 H 0.09 1.15 7.31 -51.93 -0.38 0.77 16 47 H 0.17 1.45 6.56 -52.49 -0.34 1.11 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -33.69 374.42 -9.36 -43.05 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.35 Total: -0.47 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.17 Total: -1.46 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.55 Total: -55.16 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.69 -9.36 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946863914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.827 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds