Wall clock time and date at job start Sat Apr 11 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47320 * 2 1 4 4 N 1.34654 * 125.80595 * 265.13560 * 3 2 1 5 5 H 0.96996 * 124.85277 * 0.06409 * 4 3 2 6 6 C 1.36448 * 110.29895 * 180.29550 * 4 3 2 7 7 C 1.34486 * 108.85793 * 359.74896 * 6 4 3 8 8 C 1.36776 * 125.79780 * 84.99809 * 3 2 1 9 9 C 1.47261 * 126.93913 * 359.97438 * 8 3 2 10 10 O 1.21624 * 120.00436 * 359.70292 * 9 8 3 11 11 N 1.34783 * 119.99486 * 179.70585 * 9 8 3 12 12 C 1.46498 * 119.99616 * 180.02562 * 11 9 8 13 13 H 1.08994 * 110.89049 * 31.48039 * 12 11 9 14 14 C 1.54350 * 110.82140 * 267.96661 * 12 11 9 15 15 C 1.51371 * 105.17264 * 215.42989 * 14 12 11 16 16 C 1.38492 * 130.38770 * 197.18712 * 15 14 12 17 17 C 1.38106 * 120.21369 * 179.97438 * 16 15 14 18 18 C 1.38256 * 119.93405 * 0.02562 * 17 16 15 19 19 C 1.38105 * 119.93177 * 0.02562 * 18 17 16 20 20 C 1.38215 * 109.75777 * 17.18804 * 15 14 12 21 21 C 1.51371 * 109.76009 * 0.02562 * 20 15 14 22 22 H 1.08993 * 110.30537 * 101.83019 * 21 20 15 23 23 N 1.46498 * 110.30053 * 223.88773 * 21 20 15 24 24 C 1.36936 * 119.99972 * 273.54151 * 23 21 20 25 25 H 1.08002 * 119.99631 * 0.02562 * 24 23 21 26 26 C 1.38806 * 120.00202 * 180.02562 * 24 23 21 27 27 N 1.31624 * 120.00103 * 0.02562 * 26 24 23 28 28 Si 1.86803 * 120.00201 * 179.72570 * 26 24 23 29 29 H 1.48494 * 109.47228 * 180.27680 * 28 26 24 30 30 H 1.48500 * 109.47000 * 300.27564 * 28 26 24 31 31 H 1.48493 * 109.46907 * 60.27455 * 28 26 24 32 32 H 1.08998 * 109.47235 * 299.99800 * 1 2 3 33 33 H 1.09000 * 109.47080 * 59.99716 * 1 2 3 34 34 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 35 35 H 1.09006 * 109.46752 * 240.00599 * 2 1 3 36 36 H 1.08998 * 109.46595 * 120.00872 * 2 1 3 37 37 H 1.07997 * 125.57382 * 179.77201 * 6 4 3 38 38 H 1.07991 * 126.83719 * 180.02562 * 7 6 4 39 39 H 0.96996 * 120.00463 * 359.97438 * 11 9 8 40 40 H 1.09003 * 110.30003 * 96.50348 * 14 12 11 41 41 H 1.09004 * 110.38577 * 334.40210 * 14 12 11 42 42 H 1.07999 * 119.89909 * 359.97438 * 16 15 14 43 43 H 1.07996 * 120.03465 * 180.02562 * 17 16 15 44 44 H 1.08003 * 120.03582 * 180.02562 * 18 17 16 45 45 H 1.08005 * 119.88980 * 180.02562 * 19 18 17 46 46 H 0.97001 * 120.00384 * 93.54967 * 23 21 20 47 47 H 0.97005 * 119.99717 * 359.71965 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3823 2.1326 -1.0881 5 1 2.3476 1.8042 -2.0001 6 6 2.7977 3.3803 -0.7241 7 6 2.7154 3.4928 0.6135 8 6 2.2079 2.2073 1.1051 9 6 1.9462 1.8363 2.5060 10 8 1.5230 0.7277 2.7727 11 7 2.1754 2.7255 3.4926 12 6 1.9156 2.3563 4.8863 13 1 2.0857 1.2914 5.0445 14 6 0.4816 2.7501 5.3000 15 6 0.5893 3.1724 6.7496 16 6 -0.3911 3.3194 7.7166 17 6 -0.0529 3.7221 8.9936 18 6 1.2684 3.9800 9.3084 19 6 2.2473 3.8350 8.3450 20 6 1.9102 3.4303 7.0642 21 6 2.7806 3.1995 5.8474 22 1 3.0450 4.1507 5.3856 23 7 3.9905 2.4625 6.2204 24 6 5.0928 3.1389 6.6705 25 1 5.0699 4.2157 6.7509 26 6 6.2394 2.4408 7.0234 27 7 6.2674 1.1285 6.9249 28 14 7.7456 3.3641 7.6301 29 1 8.8306 2.3966 7.9330 30 1 8.2036 4.3086 6.5797 31 1 7.4000 4.1212 8.8599 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5140 0.8899 37 1 3.1367 4.1517 -1.3997 38 1 2.9715 4.3575 1.2075 39 1 2.5132 3.6096 3.2800 40 1 -0.1879 1.8953 5.2037 41 1 0.1247 3.5797 4.6897 42 1 -1.4236 3.1185 7.4714 43 1 -0.8197 3.8354 9.7456 44 1 1.5348 4.2946 10.3067 45 1 3.2793 4.0362 8.5918 46 1 4.0109 1.4954 6.1484 47 1 5.4853 0.6490 6.6096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960262830.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:35 Heat of formation + Delta-G solvation = 42.015618 kcal Electronic energy + Delta-G solvation = -29098.019077 eV Core-core repulsion = 25246.073240 eV Total energy + Delta-G solvation = -3851.945837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.32945 -39.96719 -38.50810 -36.06495 -34.21770 -33.66342 -32.70000 -31.13331 -30.97366 -29.51906 -28.45144 -27.58048 -25.75048 -23.96061 -23.07953 -22.67407 -21.47418 -20.75616 -20.40396 -20.21233 -19.21950 -17.74720 -17.34544 -16.20089 -16.05404 -15.51970 -15.13891 -14.79957 -14.55673 -14.43726 -14.21060 -13.96201 -13.78098 -13.70884 -13.60239 -13.17084 -13.04082 -12.84715 -12.59377 -12.48538 -12.44112 -12.15053 -12.04009 -11.53400 -11.45417 -11.05149 -10.99753 -10.73577 -10.66742 -10.60672 -10.27914 -9.98748 -9.57614 -9.23771 -9.00587 -8.92131 -8.64050 -8.30180 -8.22142 -8.07069 -7.08055 -6.10064 -3.11028 1.79875 1.82677 1.91064 2.38132 3.01285 3.51072 3.54211 3.63204 3.72036 3.77959 4.24388 4.63454 4.66664 4.79945 4.87307 4.97292 5.11075 5.21942 5.27971 5.37666 5.39468 5.43808 5.46731 5.48017 5.57042 5.61145 5.73220 5.76827 5.79702 5.83774 5.93791 5.96288 6.12699 6.17128 6.18557 6.19968 6.26964 6.45203 6.50786 6.65242 6.69624 6.82801 6.87202 6.96950 7.04863 7.26435 7.33260 7.51133 7.78363 7.92839 8.64780 8.74538 9.18766 10.05732 10.20130 11.37503 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008863 B = 0.003778 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.451557 B = 7409.202008 C = 9570.932022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 C 0.106 3.894 4 N -0.554 5.554 5 H 0.414 0.586 6 C -0.021 4.021 7 C -0.165 4.165 8 C -0.228 4.228 9 C 0.592 3.408 10 O -0.551 6.551 11 N -0.707 5.707 12 C 0.144 3.856 13 H 0.101 0.899 14 C -0.086 4.086 15 C -0.106 4.106 16 C -0.116 4.116 17 C -0.131 4.131 18 C -0.130 4.130 19 C -0.080 4.080 20 C -0.092 4.092 21 C 0.212 3.788 22 H 0.067 0.933 23 N -0.722 5.722 24 C -0.333 4.333 25 H 0.065 0.935 26 C -0.040 4.040 27 N -0.939 5.939 28 Si 1.077 2.923 29 H -0.285 1.285 30 H -0.295 1.295 31 H -0.295 1.295 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.168 0.832 38 H 0.145 0.855 39 H 0.399 0.601 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.128 0.872 46 H 0.370 0.630 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.995 5.015 -13.669 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 C -0.011 4.011 4 N -0.149 5.149 5 H 0.250 0.750 6 C -0.148 4.148 7 C -0.190 4.190 8 C -0.238 4.238 9 C 0.381 3.619 10 O -0.431 6.431 11 N -0.357 5.357 12 C 0.038 3.962 13 H 0.119 0.881 14 C -0.125 4.125 15 C -0.107 4.107 16 C -0.134 4.134 17 C -0.150 4.150 18 C -0.148 4.148 19 C -0.098 4.098 20 C -0.096 4.096 21 C 0.101 3.899 22 H 0.084 0.916 23 N -0.363 5.363 24 C -0.464 4.464 25 H 0.083 0.917 26 C -0.238 4.238 27 N -0.583 5.583 28 Si 0.908 3.092 29 H -0.211 1.211 30 H -0.223 1.223 31 H -0.222 1.222 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.185 0.815 38 H 0.163 0.837 39 H 0.234 0.766 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.146 0.854 46 H 0.204 0.796 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.635 4.260 -13.059 18.001 hybrid contribution -1.344 0.442 -0.943 1.701 sum -12.979 4.702 -14.002 19.663 Atomic orbital electron populations 1.21642 0.94099 1.01938 1.01975 1.20289 0.96635 0.89160 1.03966 1.20323 1.00406 0.94675 0.85741 1.41563 1.52475 1.12243 1.08625 0.75020 1.21680 1.08355 0.88180 0.96556 1.22071 1.05574 0.97540 0.93771 1.20165 1.15292 0.95986 0.92338 1.17314 0.76697 0.83991 0.83935 1.90724 1.46909 1.21248 1.84193 1.45621 1.67209 1.17073 1.05748 1.21824 0.93205 1.00992 0.80207 0.88072 1.21354 0.97792 1.01136 0.92210 1.20471 0.94225 1.00788 0.95192 1.20458 0.98165 1.01856 0.92945 1.20875 0.96256 1.01699 0.96138 1.21051 0.93080 1.01628 0.99050 1.20814 0.99817 0.97292 0.91905 1.21653 0.94721 0.96486 0.96721 1.19889 0.86043 0.94795 0.89165 0.91569 1.42408 1.09721 1.05284 1.78874 1.19972 0.92760 0.92250 1.41415 0.91688 1.25729 1.00501 0.96941 1.00623 1.70864 1.31874 1.06543 1.49029 0.83283 0.75855 0.74282 0.75758 1.21070 1.22270 1.22236 0.91569 0.93603 0.92122 0.91710 0.87673 0.81484 0.83724 0.76587 0.90795 0.90312 0.87120 0.86761 0.86607 0.85434 0.79584 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.90 37.16 0.37 -1.05 16 2 C -0.06 -0.69 5.79 -27.88 -0.16 -0.85 16 3 C 0.11 1.29 6.43 -81.89 -0.53 0.76 16 4 N -0.55 -4.96 5.90 -9.11 -0.05 -5.01 16 5 H 0.41 2.27 8.96 -40.82 -0.37 1.91 16 6 C -0.02 -0.19 11.89 -16.82 -0.20 -0.39 16 7 C -0.17 -1.95 10.56 -37.50 -0.40 -2.34 16 8 C -0.23 -3.26 6.29 -103.35 -0.65 -3.91 16 9 C 0.59 10.00 7.81 -12.59 -0.10 9.90 16 10 O -0.55 -10.61 14.39 5.26 0.08 -10.54 16 11 N -0.71 -11.38 5.14 -53.55 -0.28 -11.65 16 12 C 0.14 2.57 3.12 -66.51 -0.21 2.36 16 13 H 0.10 2.08 7.21 -51.93 -0.37 1.71 16 14 C -0.09 -1.36 6.49 -26.85 -0.17 -1.53 16 15 C -0.11 -1.80 6.14 -104.21 -0.64 -2.44 16 16 C -0.12 -1.78 10.04 -39.54 -0.40 -2.18 16 17 C -0.13 -1.96 10.05 -39.62 -0.40 -2.36 16 18 C -0.13 -2.13 10.05 -39.62 -0.40 -2.53 16 19 C -0.08 -1.55 9.89 -39.54 -0.39 -1.94 16 20 C -0.09 -1.78 5.78 -104.21 -0.60 -2.38 16 21 C 0.21 4.26 3.22 -68.04 -0.22 4.04 16 22 H 0.07 1.32 7.77 -51.93 -0.40 0.92 16 23 N -0.72 -17.77 5.15 -53.53 -0.28 -18.05 16 24 C -0.33 -9.02 9.37 -15.06 -0.14 -9.16 16 25 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 26 C -0.04 -1.13 5.50 -17.43 -0.10 -1.22 16 27 N -0.94 -28.98 13.70 55.49 0.76 -28.22 16 28 Si 1.08 25.62 29.92 -169.99 -5.09 20.54 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.30 -6.71 7.11 56.52 0.40 -6.30 16 31 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 32 H 0.07 0.83 7.95 -51.93 -0.41 0.42 16 33 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.10 1.45 6.76 -51.93 -0.35 1.10 16 37 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.15 1.49 7.69 -52.49 -0.40 1.08 16 39 H 0.40 5.69 7.55 -40.82 -0.31 5.38 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 42 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 43 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 45 H 0.13 2.69 7.58 -52.48 -0.40 2.29 16 46 H 0.37 9.78 6.41 -40.82 -0.26 9.51 16 47 H 0.26 7.92 6.77 -40.82 -0.28 7.65 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -33.94 389.17 -10.88 -44.82 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -6.56 Total: 19.49 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -5.33 Total: -17.25 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: 0.16 Total: -62.93 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.09 Total: 20.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.94 -10.88 -44.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960262830.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.839 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds