Wall clock time and date at job start Sat Apr 11 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47320 * 2 1 4 4 N 1.34654 * 125.80595 * 265.13560 * 3 2 1 5 5 H 0.96996 * 124.85277 * 0.06409 * 4 3 2 6 6 C 1.36448 * 110.29895 * 180.29550 * 4 3 2 7 7 C 1.34486 * 108.85793 * 359.74896 * 6 4 3 8 8 C 1.36776 * 125.79780 * 84.99809 * 3 2 1 9 9 C 1.47261 * 126.93913 * 359.97438 * 8 3 2 10 10 O 1.21624 * 120.00436 * 359.70292 * 9 8 3 11 11 N 1.34783 * 119.99486 * 179.70585 * 9 8 3 12 12 C 1.46498 * 119.99616 * 180.02562 * 11 9 8 13 13 H 1.08994 * 110.89049 * 31.48039 * 12 11 9 14 14 C 1.54350 * 110.82140 * 267.96661 * 12 11 9 15 15 C 1.51371 * 105.17264 * 215.42989 * 14 12 11 16 16 C 1.38492 * 130.38770 * 197.18712 * 15 14 12 17 17 C 1.38106 * 120.21369 * 179.97438 * 16 15 14 18 18 C 1.38256 * 119.93405 * 0.02562 * 17 16 15 19 19 C 1.38105 * 119.93177 * 0.02562 * 18 17 16 20 20 C 1.38215 * 109.75777 * 17.18804 * 15 14 12 21 21 C 1.51371 * 109.76009 * 0.02562 * 20 15 14 22 22 H 1.08993 * 110.30537 * 101.83019 * 21 20 15 23 23 N 1.46498 * 110.30053 * 223.88773 * 21 20 15 24 24 C 1.36936 * 119.99972 * 273.54151 * 23 21 20 25 25 H 1.08002 * 119.99631 * 0.02562 * 24 23 21 26 26 C 1.38806 * 120.00202 * 180.02562 * 24 23 21 27 27 N 1.31624 * 120.00103 * 0.02562 * 26 24 23 28 28 Si 1.86803 * 120.00201 * 179.72570 * 26 24 23 29 29 H 1.48494 * 109.47228 * 180.27680 * 28 26 24 30 30 H 1.48500 * 109.47000 * 300.27564 * 28 26 24 31 31 H 1.48493 * 109.46907 * 60.27455 * 28 26 24 32 32 H 1.08998 * 109.47235 * 299.99800 * 1 2 3 33 33 H 1.09000 * 109.47080 * 59.99716 * 1 2 3 34 34 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 35 35 H 1.09006 * 109.46752 * 240.00599 * 2 1 3 36 36 H 1.08998 * 109.46595 * 120.00872 * 2 1 3 37 37 H 1.07997 * 125.57382 * 179.77201 * 6 4 3 38 38 H 1.07991 * 126.83719 * 180.02562 * 7 6 4 39 39 H 0.96996 * 120.00463 * 359.97438 * 11 9 8 40 40 H 1.09003 * 110.30003 * 96.50348 * 14 12 11 41 41 H 1.09004 * 110.38577 * 334.40210 * 14 12 11 42 42 H 1.07999 * 119.89909 * 359.97438 * 16 15 14 43 43 H 1.07996 * 120.03465 * 180.02562 * 17 16 15 44 44 H 1.08003 * 120.03582 * 180.02562 * 18 17 16 45 45 H 1.08005 * 119.88980 * 180.02562 * 19 18 17 46 46 H 0.97001 * 120.00384 * 93.54967 * 23 21 20 47 47 H 0.97005 * 119.99717 * 359.71965 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3823 2.1326 -1.0881 5 1 2.3476 1.8042 -2.0001 6 6 2.7977 3.3803 -0.7241 7 6 2.7154 3.4928 0.6135 8 6 2.2079 2.2073 1.1051 9 6 1.9462 1.8363 2.5060 10 8 1.5230 0.7277 2.7727 11 7 2.1754 2.7255 3.4926 12 6 1.9156 2.3563 4.8863 13 1 2.0857 1.2914 5.0445 14 6 0.4816 2.7501 5.3000 15 6 0.5893 3.1724 6.7496 16 6 -0.3911 3.3194 7.7166 17 6 -0.0529 3.7221 8.9936 18 6 1.2684 3.9800 9.3084 19 6 2.2473 3.8350 8.3450 20 6 1.9102 3.4303 7.0642 21 6 2.7806 3.1995 5.8474 22 1 3.0450 4.1507 5.3856 23 7 3.9905 2.4625 6.2204 24 6 5.0928 3.1389 6.6705 25 1 5.0699 4.2157 6.7509 26 6 6.2394 2.4408 7.0234 27 7 6.2674 1.1285 6.9249 28 14 7.7456 3.3641 7.6301 29 1 8.8306 2.3966 7.9330 30 1 8.2036 4.3086 6.5797 31 1 7.4000 4.1212 8.8599 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5140 0.8899 37 1 3.1367 4.1517 -1.3997 38 1 2.9715 4.3575 1.2075 39 1 2.5132 3.6096 3.2800 40 1 -0.1879 1.8953 5.2037 41 1 0.1247 3.5797 4.6897 42 1 -1.4236 3.1185 7.4714 43 1 -0.8197 3.8354 9.7456 44 1 1.5348 4.2946 10.3067 45 1 3.2793 4.0362 8.5918 46 1 4.0109 1.4954 6.1484 47 1 5.4853 0.6490 6.6096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960262830.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:34 Heat of formation + Delta-G solvation = 20.428255 kcal Electronic energy + Delta-G solvation = -29098.955176 eV Core-core repulsion = 25246.073240 eV Total energy + Delta-G solvation = -3852.881936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.23514 -41.35479 -39.81313 -37.55942 -36.01730 -34.64530 -34.02451 -32.83820 -31.92628 -31.15687 -29.42000 -28.80818 -27.44228 -25.28208 -24.80015 -23.76601 -22.71226 -21.87756 -21.76863 -21.42555 -20.46681 -19.38465 -18.60090 -17.69634 -17.26141 -16.88300 -16.44269 -16.11863 -15.94896 -15.80927 -15.55584 -15.37723 -15.07406 -15.00206 -14.67102 -14.62143 -14.24622 -13.99926 -13.96270 -13.80188 -13.45290 -13.30883 -13.05822 -13.01300 -12.75008 -12.64437 -12.32801 -12.24026 -12.11090 -11.91005 -11.87092 -11.68321 -11.30476 -11.03569 -10.85378 -10.14537 -9.73728 -9.65698 -9.44143 -9.16874 -9.11481 -8.37577 -5.32291 0.47954 0.55366 0.75270 1.54897 1.56806 1.67071 1.82880 2.09019 2.50259 2.57987 2.70594 2.89860 3.38835 3.41724 3.62192 3.79540 3.95244 3.98699 4.06476 4.10033 4.14060 4.24706 4.29977 4.31629 4.34660 4.41684 4.53801 4.61313 4.68181 4.72113 4.80315 4.87162 4.90476 4.96985 4.98500 5.07773 5.14991 5.26955 5.31023 5.31610 5.50584 5.56549 5.62297 5.68360 5.79070 5.86418 5.98408 6.18043 6.46948 6.60800 6.72073 7.04779 7.35667 7.94038 8.08762 9.13039 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008863 B = 0.003778 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.451557 B = 7409.202008 C = 9570.932022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.062 4.062 3 C 0.104 3.896 4 N -0.536 5.536 5 H 0.434 0.566 6 C 0.002 3.998 7 C -0.192 4.192 8 C -0.268 4.268 9 C 0.584 3.416 10 O -0.586 6.586 11 N -0.703 5.703 12 C 0.153 3.847 13 H 0.067 0.933 14 C -0.073 4.073 15 C -0.108 4.108 16 C -0.113 4.113 17 C -0.120 4.120 18 C -0.131 4.131 19 C -0.108 4.108 20 C -0.120 4.120 21 C 0.212 3.788 22 H 0.065 0.935 23 N -0.734 5.734 24 C -0.318 4.318 25 H 0.069 0.931 26 C -0.102 4.102 27 N -0.975 5.975 28 Si 1.125 2.875 29 H -0.296 1.296 30 H -0.276 1.276 31 H -0.277 1.277 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.210 0.790 38 H 0.152 0.848 39 H 0.408 0.592 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.145 0.855 43 H 0.155 0.845 44 H 0.139 0.861 45 H 0.098 0.902 46 H 0.356 0.644 47 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.875 7.026 -15.109 22.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 C -0.015 4.015 4 N -0.132 5.132 5 H 0.274 0.726 6 C -0.126 4.126 7 C -0.215 4.215 8 C -0.278 4.278 9 C 0.375 3.625 10 O -0.468 6.468 11 N -0.353 5.353 12 C 0.046 3.954 13 H 0.085 0.915 14 C -0.112 4.112 15 C -0.110 4.110 16 C -0.131 4.131 17 C -0.137 4.137 18 C -0.149 4.149 19 C -0.126 4.126 20 C -0.124 4.124 21 C 0.102 3.898 22 H 0.083 0.917 23 N -0.375 5.375 24 C -0.449 4.449 25 H 0.087 0.913 26 C -0.293 4.293 27 N -0.624 5.624 28 Si 0.950 3.050 29 H -0.223 1.223 30 H -0.202 1.202 31 H -0.203 1.203 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.226 0.774 38 H 0.169 0.831 39 H 0.244 0.756 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.163 0.837 43 H 0.173 0.827 44 H 0.157 0.843 45 H 0.116 0.884 46 H 0.188 0.812 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -13.566 6.337 -14.542 20.872 hybrid contribution -0.884 -0.138 -0.534 1.042 sum -14.449 6.199 -15.076 21.783 Atomic orbital electron populations 1.21579 0.93432 1.02505 1.01463 1.20264 0.97187 0.88811 1.03776 1.20403 0.99950 0.94967 0.86212 1.41559 1.50905 1.11851 1.08913 0.72636 1.22278 1.05622 0.88499 0.96160 1.22278 1.07010 0.97022 0.95235 1.20184 1.18067 0.98225 0.91294 1.17847 0.76012 0.83464 0.85214 1.90692 1.48612 1.22569 1.84902 1.45552 1.67304 1.17476 1.04946 1.21525 0.94409 0.98548 0.80871 0.91530 1.21253 0.96001 1.01932 0.91984 1.20637 0.93657 1.00618 0.96040 1.20888 0.99328 1.00303 0.92533 1.21341 0.96284 0.99333 0.96781 1.21322 0.93305 1.00932 0.99307 1.20769 0.99339 0.99521 0.93015 1.21464 0.95716 0.98866 0.96329 1.20042 0.85003 0.94390 0.90341 0.91721 1.42560 1.10998 1.04727 1.79171 1.20258 0.93234 0.92442 1.39011 0.91344 1.27129 1.03774 0.96895 1.01537 1.70990 1.31404 1.07843 1.52118 0.82673 0.72451 0.73443 0.76455 1.22254 1.20211 1.20296 0.94532 0.91476 0.91073 0.88564 0.91128 0.77358 0.83058 0.75594 0.90291 0.88288 0.83731 0.82695 0.84350 0.88421 0.81198 0.94973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.90 71.98 0.71 -1.93 16 2 C -0.06 -1.36 5.79 29.85 0.17 -1.19 16 3 C 0.10 2.45 6.43 41.78 0.27 2.72 16 4 N -0.54 -8.11 5.90 -182.73 -1.08 -9.19 16 5 H 0.43 3.14 8.96 -92.71 -0.83 2.31 16 6 C 0.00 0.03 11.89 83.12 0.99 1.02 16 7 C -0.19 -4.32 10.56 23.62 0.25 -4.07 16 8 C -0.27 -7.78 6.29 -19.04 -0.12 -7.90 16 9 C 0.58 20.87 7.81 86.61 0.68 21.55 16 10 O -0.59 -24.24 14.39 -4.11 -0.06 -24.30 16 11 N -0.70 -23.85 5.14 -441.58 -2.27 -26.12 16 12 C 0.15 5.78 3.12 45.91 0.14 5.92 16 13 H 0.07 2.99 7.21 -2.39 -0.02 2.97 16 14 C -0.07 -2.30 6.49 30.52 0.20 -2.10 16 15 C -0.11 -3.62 6.14 -19.60 -0.12 -3.74 16 16 C -0.11 -3.12 10.04 22.30 0.22 -2.90 16 17 C -0.12 -3.15 10.05 22.24 0.22 -2.93 16 18 C -0.13 -4.09 10.05 22.24 0.22 -3.87 16 19 C -0.11 -4.27 9.89 22.30 0.22 -4.05 16 20 C -0.12 -4.78 5.78 -19.60 -0.11 -4.89 16 21 C 0.21 8.92 3.22 44.92 0.14 9.07 16 22 H 0.07 2.70 7.77 -2.39 -0.02 2.68 16 23 N -0.73 -38.41 5.15 -323.28 -1.67 -40.07 16 24 C -0.32 -17.94 9.37 84.03 0.79 -17.15 16 25 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 26 C -0.10 -6.04 5.50 84.86 0.47 -5.57 16 27 N -0.98 -63.18 13.70 21.65 0.30 -62.88 16 28 Si 1.12 52.80 29.92 68.60 2.05 54.85 16 29 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 30 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 31 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 32 H 0.04 0.94 7.95 -2.39 -0.02 0.92 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.07 2.07 6.76 -2.39 -0.02 2.05 16 37 H 0.21 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.15 3.02 7.69 -2.92 -0.02 3.00 16 39 H 0.41 12.17 7.55 -92.71 -0.70 11.47 16 40 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.10 2.71 8.08 -2.38 -0.02 2.69 16 42 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 43 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 44 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 45 H 0.10 4.35 7.58 -2.91 -0.02 4.33 16 46 H 0.36 20.35 6.41 -92.71 -0.59 19.75 16 47 H 0.24 15.82 6.77 -92.70 -0.63 15.19 16 Total: -1.00 -79.58 389.17 1.66 -77.92 By element: Atomic # 1 Polarization: 52.76 SS G_CDS: -0.96 Total: 51.80 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 5.35 Total: -22.00 kcal Atomic # 7 Polarization: -133.55 SS G_CDS: -4.72 Total: -138.27 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.06 Total: -24.30 kcal Atomic # 14 Polarization: 52.80 SS G_CDS: 2.05 Total: 54.85 kcal Total: -79.58 1.66 -77.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960262830.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.348 kcal (2) G-P(sol) polarization free energy of solvation -79.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds