Wall clock time and date at job start Sat Apr 11 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47188 * 2 1 4 4 C 1.37799 * 120.04112 * 264.98265 * 3 2 1 5 5 C 1.38711 * 120.63803 * 180.02562 * 4 3 2 6 6 C 1.37799 * 120.30070 * 359.97438 * 5 4 3 7 7 C 1.39232 * 119.66979 * 0.02562 * 6 5 4 8 8 C 1.47439 * 134.01342 * 180.02562 * 7 6 5 9 9 C 1.46914 * 126.76608 * 359.96791 * 8 7 6 10 10 O 1.21670 * 119.99974 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00366 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00168 * 179.97438 * 11 9 8 13 13 H 1.09004 * 115.51786 * 350.58688 * 12 11 9 14 14 C 1.53005 * 117.44335 * 205.16764 * 12 11 9 15 15 H 1.09000 * 119.53621 * 5.71252 * 14 12 11 16 16 C 1.54385 * 118.12369 * 160.81130 * 14 12 11 17 17 N 1.48148 * 104.61958 * 87.19086 * 16 14 12 18 18 C 1.36935 * 127.84068 * 140.41664 * 17 16 14 19 19 H 1.08001 * 119.99998 * 195.57825 * 18 17 16 20 20 C 1.38816 * 119.99913 * 15.56890 * 18 17 16 21 21 N 1.31622 * 119.99892 * 9.10285 * 20 18 17 22 22 Si 1.86803 * 119.99922 * 189.10050 * 20 18 17 23 23 H 1.48495 * 109.46861 * 90.00344 * 22 20 18 24 24 H 1.48503 * 109.46884 * 210.00264 * 22 20 18 25 25 H 1.48494 * 109.46985 * 330.00213 * 22 20 18 26 26 C 1.48142 * 104.32329 * 320.41448 * 17 16 14 27 27 C 1.53000 * 117.44406 * 135.99974 * 12 11 9 28 28 H 1.09004 * 119.53903 * 355.87893 * 27 12 11 29 29 C 1.36370 * 106.47062 * 180.22271 * 8 7 6 30 30 N 1.35476 * 109.77055 * 359.57387 * 29 8 7 31 31 H 0.97004 * 124.78268 * 180.18264 * 30 29 8 32 32 C 1.37961 * 110.43066 * 0.44491 * 30 29 8 33 33 H 1.08997 * 109.46931 * 299.99562 * 1 2 3 34 34 H 1.09000 * 109.47269 * 59.99732 * 1 2 3 35 35 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 36 36 H 1.09003 * 109.46628 * 240.00141 * 2 1 3 37 37 H 1.09000 * 109.47089 * 120.00792 * 2 1 3 38 38 H 1.08000 * 119.67957 * 0.03927 * 4 3 2 39 39 H 1.07997 * 119.84845 * 179.97438 * 5 4 3 40 40 H 1.07995 * 120.16200 * 180.02562 * 6 5 4 41 41 H 0.97003 * 119.99483 * 359.97438 * 11 9 8 42 42 H 1.09006 * 110.40735 * 205.97403 * 16 14 12 43 43 H 1.08999 * 110.40774 * 328.40476 * 16 14 12 44 44 H 0.96997 * 119.99388 * 179.97438 * 21 20 18 45 45 H 1.09001 * 110.40910 * 158.36918 * 26 17 16 46 46 H 1.09007 * 110.41055 * 280.80468 * 26 17 16 47 47 H 1.08000 * 125.11562 * 179.73658 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0364 -1.1883 5 6 2.8247 3.3435 -1.2027 6 6 2.9631 4.0451 -0.0248 7 6 2.6351 3.4354 1.1832 8 6 2.6581 3.8728 2.5910 9 6 3.0759 5.1874 3.0967 10 8 3.4526 6.0459 2.3211 11 7 3.0418 5.4426 4.4196 12 6 3.4589 6.7532 4.9238 13 1 3.9315 7.4090 4.1925 14 6 3.9640 6.8258 6.3663 15 1 4.0884 5.9067 6.9389 16 6 4.8134 8.0469 6.7794 17 7 3.8235 9.0674 7.1959 18 6 3.9084 9.9401 8.2477 19 1 3.0249 10.4552 8.5948 20 6 5.1302 10.1625 8.8681 21 7 6.2343 9.6788 8.3396 22 14 5.2072 11.1483 10.4529 23 1 5.0662 10.2322 11.6130 24 1 6.5117 11.8532 10.5345 25 1 4.1050 12.1432 10.4710 26 6 2.7207 8.9295 6.2164 27 6 2.5851 7.4069 5.9962 28 1 1.6572 6.9232 6.3018 29 6 2.2208 2.8147 3.3319 30 7 1.9232 1.7754 2.5154 31 1 1.5906 0.9145 2.8142 32 6 2.1654 2.1120 1.1996 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 -0.3634 -1.0276 -0.0005 36 1 1.8933 -0.5138 -0.8900 37 1 1.8934 -0.5140 0.8899 38 1 2.2555 1.4960 -2.1175 39 1 3.0787 3.8134 -2.1413 40 1 3.3242 5.0628 -0.0386 41 1 2.7412 4.7582 5.0379 42 1 5.4681 7.7903 7.6123 43 1 5.3976 8.4075 5.9327 44 1 7.0880 9.8346 8.7729 45 1 1.7965 9.3387 6.6244 46 1 2.9780 9.4278 5.2816 47 1 2.1235 2.8073 4.4075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962815439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:37 Heat of formation + Delta-G solvation = 53.273164 kcal Electronic energy + Delta-G solvation = -27890.712137 eV Core-core repulsion = 24039.254463 eV Total energy + Delta-G solvation = -3851.457674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.50216 -40.90038 -39.53200 -38.18832 -36.04718 -35.19040 -34.34783 -32.41133 -31.53689 -30.16555 -29.58687 -28.91320 -27.58537 -24.97754 -24.63607 -23.16567 -22.78591 -22.40198 -21.89442 -20.88810 -20.43231 -18.91062 -18.83476 -17.78398 -17.39718 -16.97275 -16.68544 -16.33746 -16.12096 -15.61035 -15.58011 -15.29091 -15.14961 -14.83452 -14.77492 -14.62507 -14.25562 -13.75937 -13.64023 -13.55990 -13.32395 -13.21024 -12.90496 -12.85543 -12.70617 -12.56154 -12.40753 -12.12257 -12.02017 -11.86523 -11.82650 -11.68997 -11.64542 -11.03899 -10.83304 -10.68144 -10.57338 -9.68630 -9.27811 -8.92482 -8.67664 -7.91281 -5.28529 -0.00636 0.56956 0.99438 1.47298 1.49400 1.58583 1.95845 2.12104 2.31812 2.49332 2.85651 2.99541 3.29269 3.60296 3.69028 3.75937 3.84643 3.86987 3.95023 4.03594 4.12769 4.16064 4.33956 4.37254 4.43471 4.49671 4.54337 4.58602 4.61465 4.71437 4.84089 4.86879 4.95623 4.99502 5.05165 5.12785 5.18766 5.29672 5.39858 5.42921 5.46169 5.50405 5.53828 5.57467 5.64482 5.65036 5.71555 6.12925 6.16709 6.52231 6.65561 7.00313 7.33079 7.67196 8.46052 9.22688 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032449 B = 0.001884 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.692599 B =14859.052901 C =15226.922697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.084 4.084 4 C -0.109 4.109 5 C -0.135 4.135 6 C -0.108 4.108 7 C -0.089 4.089 8 C -0.273 4.273 9 C 0.588 3.412 10 O -0.594 6.594 11 N -0.679 5.679 12 C 0.117 3.883 13 H 0.099 0.901 14 C -0.175 4.175 15 H 0.132 0.868 16 C 0.187 3.813 17 N -0.616 5.616 18 C -0.240 4.240 19 H 0.084 0.916 20 C -0.065 4.065 21 N -0.949 5.949 22 Si 0.984 3.016 23 H -0.282 1.282 24 H -0.296 1.296 25 H -0.267 1.267 26 C 0.147 3.853 27 C -0.163 4.163 28 H 0.139 0.861 29 C 0.152 3.848 30 N -0.557 5.557 31 H 0.439 0.561 32 C 0.080 3.920 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.153 0.847 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.417 0.583 42 H 0.061 0.939 43 H -0.008 1.008 44 H 0.250 0.750 45 H 0.065 0.935 46 H 0.015 0.985 47 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.536 -27.142 -14.871 33.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.086 4.086 4 C -0.128 4.128 5 C -0.153 4.153 6 C -0.127 4.127 7 C -0.093 4.093 8 C -0.284 4.284 9 C 0.380 3.620 10 O -0.475 6.475 11 N -0.328 5.328 12 C 0.009 3.991 13 H 0.116 0.884 14 C -0.196 4.196 15 H 0.150 0.850 16 C 0.061 3.939 17 N -0.341 5.341 18 C -0.369 4.369 19 H 0.101 0.899 20 C -0.258 4.258 21 N -0.597 5.597 22 Si 0.811 3.189 23 H -0.209 1.209 24 H -0.223 1.223 25 H -0.192 1.192 26 C 0.021 3.979 27 C -0.184 4.184 28 H 0.157 0.843 29 C 0.017 3.983 30 N -0.159 5.159 31 H 0.280 0.720 32 C -0.025 4.025 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.171 0.829 39 H 0.156 0.844 40 H 0.121 0.879 41 H 0.254 0.746 42 H 0.079 0.921 43 H 0.010 0.990 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.032 0.968 47 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -13.189 -26.548 -15.215 33.321 hybrid contribution 0.513 0.756 1.082 1.416 sum -12.676 -25.792 -14.133 32.026 Atomic orbital electron populations 1.21754 0.94186 1.02525 1.01865 1.20539 0.96386 0.90566 1.04180 1.19237 1.02463 0.97407 0.89499 1.21067 0.99355 0.94579 0.97807 1.21202 1.01191 0.95397 0.97560 1.20694 1.00294 0.99793 0.91878 1.19041 1.03396 0.94209 0.92637 1.19857 1.20081 0.95116 0.93372 1.17657 0.76210 0.86637 0.81526 1.90750 1.50138 1.49195 1.57455 1.44876 1.66914 1.14154 1.06884 1.21306 1.00764 0.86567 0.90424 0.88352 1.24315 0.98130 1.00455 0.96740 0.85025 1.20807 0.90759 0.85924 0.96367 1.45487 1.18909 1.39125 1.30531 1.19413 0.94040 1.17830 1.05610 0.89863 1.25802 0.94733 1.01945 1.03341 1.70111 0.97641 1.51165 1.40753 0.85005 0.76815 0.78098 0.78948 1.20869 1.22250 1.19183 1.21270 0.92111 0.92824 0.91650 1.24262 0.95724 0.95559 1.02883 0.84338 1.22678 0.92966 0.84767 0.97902 1.41486 1.55346 1.15383 1.03721 0.71953 1.18108 1.04346 0.93986 0.86062 0.93365 0.92871 0.90762 0.89258 0.90388 0.82932 0.84368 0.87877 0.74569 0.92095 0.99023 0.94095 0.91692 0.96759 0.75693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.90 71.98 0.71 -0.28 16 2 C -0.08 -0.60 6.07 29.85 0.18 -0.42 16 3 C -0.08 -1.23 5.15 -19.77 -0.10 -1.33 16 4 C -0.11 -1.71 9.64 22.28 0.21 -1.49 16 5 C -0.13 -2.75 10.03 22.28 0.22 -2.53 16 6 C -0.11 -2.97 9.85 22.40 0.22 -2.75 16 7 C -0.09 -2.30 6.27 -20.08 -0.13 -2.42 16 8 C -0.27 -6.61 6.27 -19.02 -0.12 -6.73 16 9 C 0.59 18.44 7.80 86.52 0.67 19.12 16 10 O -0.59 -24.82 15.72 -4.25 -0.07 -24.89 16 11 N -0.68 -17.79 5.55 -446.28 -2.48 -20.26 16 12 C 0.12 4.02 5.98 44.99 0.27 4.29 16 13 H 0.10 4.15 7.40 -2.39 -0.02 4.13 16 14 C -0.18 -6.51 7.05 -9.93 -0.07 -6.58 16 15 H 0.13 4.13 8.14 -2.39 -0.02 4.11 16 16 C 0.19 9.49 5.70 86.53 0.49 9.98 16 17 N -0.62 -32.63 3.38 -688.04 -2.32 -34.96 16 18 C -0.24 -13.64 10.35 84.03 0.87 -12.77 16 19 H 0.08 4.49 7.85 -2.91 -0.02 4.46 16 20 C -0.06 -3.71 5.40 84.86 0.46 -3.26 16 21 N -0.95 -58.00 10.86 21.65 0.24 -57.76 16 22 Si 0.98 45.78 29.56 68.60 2.03 47.81 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 C 0.15 6.36 7.04 86.55 0.61 6.97 16 27 C -0.16 -5.62 7.05 -9.92 -0.07 -5.69 16 28 H 0.14 3.83 8.14 -2.38 -0.02 3.81 16 29 C 0.15 1.90 11.33 83.69 0.95 2.85 16 30 N -0.56 -5.86 5.99 -187.08 -1.12 -6.98 16 31 H 0.44 1.17 8.96 -92.71 -0.83 0.34 16 32 C 0.08 1.44 6.94 38.92 0.27 1.71 16 33 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.09 0.49 8.05 -2.39 -0.02 0.47 16 37 H 0.08 0.39 8.12 -2.39 -0.02 0.37 16 38 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.10 3.34 7.45 -2.91 -0.02 3.31 16 41 H 0.42 6.97 7.71 -92.71 -0.71 6.26 16 42 H 0.06 3.42 6.51 -2.38 -0.02 3.41 16 43 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 45 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.23 0.52 7.38 -2.91 -0.02 0.50 16 Total: -1.00 -83.45 389.20 1.40 -82.05 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -0.54 Total: 16.34 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 5.66 Total: -1.34 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -5.69 Total: -119.96 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.07 Total: -24.89 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -83.45 1.40 -82.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962815439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.321 kcal (2) G-P(sol) polarization free energy of solvation -83.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds