Wall clock time and date at job start Sat Apr 11 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39643 * 120.48962 * 135.13720 * 3 2 1 5 5 N 1.31748 * 120.88256 * 179.97438 * 4 3 2 6 6 C 1.31734 * 122.03823 * 0.02562 * 5 4 3 7 7 C 1.39599 * 120.88068 * 359.97438 * 6 5 4 8 8 C 1.47858 * 120.49202 * 180.02562 * 7 6 5 9 9 O 1.21555 * 120.00284 * 179.97438 * 8 7 6 10 10 N 1.34780 * 120.00282 * 0.02562 * 8 7 6 11 11 C 1.46497 * 120.00355 * 179.97438 * 10 8 7 12 12 H 1.08994 * 108.96989 * 36.07604 * 11 10 8 13 13 C 1.51981 * 108.20350 * 275.88740 * 11 10 8 14 14 C 1.53813 * 111.08046 * 184.37169 * 13 11 10 15 15 C 1.51614 * 107.02764 * 58.95982 * 14 13 11 16 16 H 1.09004 * 110.50206 * 55.20033 * 15 14 13 17 17 C 1.53061 * 117.50016 * 183.31422 * 15 14 13 18 18 N 1.48658 * 103.44676 * 156.24874 * 17 15 14 19 19 C 1.36929 * 125.78801 * 155.65880 * 18 17 15 20 20 H 1.07998 * 120.00454 * 179.97438 * 19 18 17 21 21 C 1.38818 * 119.99548 * 359.97438 * 19 18 17 22 22 N 1.31613 * 120.00300 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99939 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46963 * 59.99687 * 23 21 19 25 25 H 1.48495 * 109.47133 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46794 * 300.00183 * 23 21 19 27 27 C 1.48244 * 108.42877 * 335.62183 * 18 17 15 28 28 C 1.52327 * 105.86786 * 356.81696 * 27 18 17 29 29 H 1.08996 * 110.24568 * 272.17110 * 28 27 18 30 30 C 1.51446 * 117.44963 * 145.31281 * 28 27 18 31 31 C 1.39678 * 120.49233 * 315.39624 * 3 2 1 32 32 H 4.52740 * 13.92867 * 0.02562 * 4 2 1 33 33 H 1.07995 * 119.55655 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.55720 * 180.02562 * 6 5 4 35 35 H 0.97002 * 119.99390 * 359.97438 * 10 8 7 36 36 H 1.09002 * 108.19673 * 64.72678 * 13 11 10 37 37 H 1.09001 * 110.48975 * 305.51029 * 13 11 10 38 38 H 1.09004 * 109.94067 * 299.58368 * 14 13 11 39 39 H 1.08995 * 109.94424 * 178.34250 * 14 13 11 40 40 H 1.08993 * 110.62759 * 274.74474 * 17 15 14 41 41 H 1.09000 * 110.62245 * 37.59860 * 17 15 14 42 42 H 0.97001 * 120.00342 * 180.02562 * 22 21 19 43 43 H 1.08998 * 110.17479 * 237.71174 * 27 18 17 44 44 H 1.09005 * 110.16961 * 115.91283 * 27 18 17 45 45 H 1.08990 * 109.94173 * 300.61035 * 30 28 27 46 46 H 1.08999 * 109.93752 * 61.84493 * 30 28 27 47 47 H 1.08004 * 120.91801 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3141 0.8539 -0.8488 5 7 4.6316 0.8612 -0.8549 6 6 5.3384 0.0735 -0.0705 7 6 4.7118 -0.8109 0.8093 8 6 5.5136 -1.6908 1.6863 9 8 4.9587 -2.4572 2.4494 10 7 6.8597 -1.6425 1.6403 11 6 7.6541 -2.5140 2.5096 12 1 7.1470 -3.4737 2.6080 13 6 7.7856 -1.8399 3.8654 14 6 8.7010 -2.6495 4.7993 15 6 10.0511 -2.7533 4.1172 16 1 10.4313 -1.7620 3.8704 17 6 11.1316 -3.5858 4.8116 18 7 12.0368 -3.9750 3.6984 19 6 13.3592 -4.3084 3.8210 20 1 13.9315 -4.5780 2.9457 21 6 13.9642 -4.2998 5.0703 22 7 13.2666 -3.9718 6.1371 23 14 15.7681 -4.7553 5.2377 24 1 16.5921 -3.8174 4.4336 25 1 16.1699 -4.6696 6.6647 26 1 15.9760 -6.1417 4.7478 27 6 11.2648 -3.9419 2.4333 28 6 9.8345 -3.5960 2.8270 29 1 9.2790 -4.5031 3.0651 30 6 9.0344 -2.7390 1.8684 31 6 3.3151 -0.8560 0.8452 32 1 -1.0501 -0.0002 0.0009 33 1 2.7746 1.5171 -1.5086 34 1 6.4170 0.1129 -0.1081 35 1 7.3025 -1.0307 1.0316 36 1 6.7927 -1.7739 4.3104 37 1 8.1914 -0.8344 3.7538 38 1 8.2858 -3.6452 4.9554 39 1 8.8057 -2.1354 5.7547 40 1 11.6650 -2.9851 5.5482 41 1 10.6947 -4.4674 5.2807 42 1 13.6895 -3.9655 7.0101 43 1 11.2957 -4.9176 1.9484 44 1 11.6666 -3.1779 1.7677 45 1 9.5350 -1.7825 1.7184 46 1 8.9217 -3.2543 0.9146 47 1 2.7986 -1.5317 1.5108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980152480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:40 Heat of formation + Delta-G solvation = 57.324312 kcal Electronic energy + Delta-G solvation = -28172.742979 eV Core-core repulsion = 24321.460977 eV Total energy + Delta-G solvation = -3851.282003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.88452 -40.97460 -39.86720 -37.17954 -35.51480 -35.02008 -33.78999 -33.27057 -32.11342 -31.52058 -30.28278 -27.83679 -26.92347 -25.70900 -25.00557 -23.55568 -22.64668 -21.71115 -21.39569 -20.97568 -20.07469 -18.77515 -18.48610 -18.02459 -17.61586 -16.86682 -16.63918 -16.29139 -16.10634 -15.81245 -15.61737 -15.49004 -15.02847 -14.90401 -14.76135 -14.30137 -14.09977 -13.68325 -13.57674 -13.49382 -13.43188 -13.10750 -12.88899 -12.72628 -12.70077 -12.63396 -12.12726 -11.95490 -11.83721 -11.77735 -11.70045 -11.58907 -11.37782 -11.09456 -10.95159 -10.81005 -10.69662 -10.55159 -10.13101 -9.87869 -8.85921 -7.74513 -5.18172 -0.61347 -0.21349 1.46901 1.50223 1.56551 1.58217 1.64228 1.99678 2.13066 2.51295 2.86989 3.07752 3.28208 3.35097 3.56655 3.61649 3.65055 3.67772 3.70850 3.74045 3.96485 4.09518 4.15441 4.30909 4.36175 4.46457 4.47930 4.56859 4.69972 4.73955 4.79513 4.81318 4.85071 4.98028 5.01584 5.04381 5.08856 5.14109 5.22023 5.27469 5.37720 5.40055 5.46242 5.49348 5.58447 5.76865 5.86362 6.31544 6.43391 6.48792 6.68025 7.09701 7.11439 7.79004 8.45825 9.27611 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.035993 B = 0.001884 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.752161 B =14856.797067 C =15247.182034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.208 4.208 3 C -0.047 4.047 4 C 0.148 3.852 5 N -0.494 5.494 6 C 0.148 3.852 7 C -0.189 4.189 8 C 0.565 3.435 9 O -0.573 6.573 10 N -0.703 5.703 11 C 0.158 3.842 12 H 0.073 0.927 13 C -0.115 4.115 14 C -0.093 4.093 15 C -0.102 4.102 16 H 0.071 0.929 17 C 0.166 3.834 18 N -0.632 5.632 19 C -0.238 4.238 20 H 0.081 0.919 21 C -0.070 4.070 22 N -0.950 5.950 23 Si 0.979 3.021 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.280 1.280 27 C 0.140 3.860 28 C -0.091 4.091 29 H 0.063 0.937 30 C -0.095 4.095 31 C -0.008 4.008 32 H 0.263 0.737 33 H 0.190 0.810 34 H 0.192 0.808 35 H 0.416 0.584 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.068 0.932 41 H -0.018 1.018 42 H 0.246 0.754 43 H 0.023 0.977 44 H 0.035 0.965 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.829 11.728 -15.264 30.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.208 4.208 3 C -0.050 4.050 4 C -0.009 4.009 5 N -0.201 5.201 6 C -0.010 4.010 7 C -0.194 4.194 8 C 0.352 3.648 9 O -0.453 6.453 10 N -0.354 5.354 11 C 0.054 3.946 12 H 0.092 0.908 13 C -0.153 4.153 14 C -0.132 4.132 15 C -0.122 4.122 16 H 0.090 0.910 17 C 0.042 3.958 18 N -0.359 5.359 19 C -0.367 4.367 20 H 0.099 0.901 21 C -0.262 4.262 22 N -0.600 5.600 23 Si 0.808 3.192 24 H -0.201 1.201 25 H -0.221 1.221 26 H -0.206 1.206 27 C 0.015 3.985 28 C -0.110 4.110 29 H 0.082 0.918 30 C -0.133 4.133 31 C -0.034 4.034 32 H 0.279 0.721 33 H 0.206 0.794 34 H 0.209 0.791 35 H 0.254 0.746 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.000 1.000 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.573 11.724 -15.168 30.385 hybrid contribution 0.744 -1.072 1.059 1.681 sum -22.829 10.653 -14.109 28.874 Atomic orbital electron populations 1.25876 0.96498 0.95740 0.95754 1.19866 0.91989 1.04493 1.04483 1.16944 0.88941 0.99471 0.99600 1.23578 0.89567 0.93910 0.93836 1.67828 1.08078 1.22120 1.22094 1.23506 1.01835 0.87814 0.87799 1.20822 0.94503 1.02048 1.02070 1.18194 0.82667 0.81987 0.81923 1.90793 1.72098 1.41087 1.41315 1.45897 1.04980 1.42220 1.42327 1.20886 0.91044 0.93427 0.89230 0.90834 1.21723 0.99215 0.99778 0.94628 1.21185 0.93472 1.00209 0.98350 1.22162 0.94889 0.98500 0.96615 0.91031 1.21365 0.89163 0.94563 0.90735 1.45459 1.06845 1.80323 1.03235 1.19450 0.85809 1.37759 0.93668 0.90149 1.25628 1.02493 1.02882 0.95247 1.70075 1.35874 1.55955 0.98095 0.85136 0.79696 0.78145 0.76259 1.20120 1.22074 1.20648 1.21135 0.90958 0.97813 0.88560 1.21599 0.94548 0.98317 0.96566 0.91837 1.21477 0.92769 1.00889 0.98192 1.21873 0.92794 0.94435 0.94341 0.72087 0.79354 0.79092 0.74554 0.92507 0.90243 0.92581 0.91671 0.91419 1.00000 0.94485 0.95866 0.94683 0.89368 0.89416 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 19.25 74.32 1.43 0.32 16 2 C -0.21 -2.99 13.27 30.02 0.40 -2.59 16 3 C -0.05 -0.76 5.73 -21.35 -0.12 -0.88 16 4 C 0.15 2.01 10.91 85.04 0.93 2.94 16 5 N -0.49 -7.49 10.33 -193.76 -2.00 -9.49 16 6 C 0.15 1.99 10.70 85.04 0.91 2.90 16 7 C -0.19 -3.32 5.88 -20.03 -0.12 -3.44 16 8 C 0.57 12.20 7.70 86.79 0.67 12.87 16 9 O -0.57 -17.20 16.00 -3.89 -0.06 -17.26 16 10 N -0.70 -11.95 4.97 -445.64 -2.21 -14.16 16 11 C 0.16 3.48 2.45 44.94 0.11 3.59 16 12 H 0.07 1.93 7.58 -2.39 -0.02 1.92 16 13 C -0.11 -2.77 5.27 30.53 0.16 -2.61 16 14 C -0.09 -2.82 5.72 30.41 0.17 -2.64 16 15 C -0.10 -3.67 2.46 -10.33 -0.03 -3.70 16 16 H 0.07 2.55 8.03 -2.39 -0.02 2.53 16 17 C 0.17 8.27 5.56 85.98 0.48 8.75 16 18 N -0.63 -32.83 3.45 -693.08 -2.39 -35.23 16 19 C -0.24 -13.49 10.30 84.04 0.87 -12.63 16 20 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 21 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 22 N -0.95 -57.54 10.11 21.65 0.22 -57.32 16 23 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 C 0.14 5.59 6.98 85.82 0.60 6.19 16 28 C -0.09 -2.91 2.31 -10.62 -0.02 -2.93 16 29 H 0.06 2.13 7.94 -2.39 -0.02 2.12 16 30 C -0.10 -2.06 5.13 30.37 0.16 -1.91 16 31 C -0.01 -0.15 9.44 22.99 0.22 0.06 16 32 H 0.26 0.00 7.80 -4.41 -0.03 -0.04 16 33 H 0.19 1.50 8.06 -2.91 -0.02 1.47 16 34 H 0.19 1.28 6.41 -2.91 -0.02 1.26 16 35 H 0.42 4.16 6.64 -92.71 -0.62 3.54 16 36 H 0.06 1.47 8.06 -2.39 -0.02 1.45 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.77 7.99 -2.38 -0.02 1.75 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 3.86 5.93 -2.39 -0.01 3.84 16 41 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 42 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.04 1.33 8.08 -2.38 -0.02 1.31 16 45 H 0.09 1.68 8.04 -2.39 -0.02 1.67 16 46 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.14 2.81 7.73 -2.91 -0.02 2.78 16 Total: -1.00 -76.05 385.43 3.22 -72.83 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.37 Total: 11.74 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 7.27 Total: 0.72 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -6.39 Total: -116.20 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.06 Total: -17.26 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -76.05 3.22 -72.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980152480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.156 kcal (2) G-P(sol) polarization free energy of solvation -76.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds