Wall clock time and date at job start Sat Apr 11 2020 05:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39644 * 120.48999 * 82.17147 * 3 2 1 5 5 N 1.31747 * 120.88053 * 179.97438 * 4 3 2 6 6 C 1.31732 * 122.04173 * 0.02562 * 5 4 3 7 7 C 1.39602 * 120.87653 * 359.73921 * 6 5 4 8 8 C 1.47860 * 120.48911 * 180.26700 * 7 6 5 9 9 O 1.21549 * 119.99726 * 180.22636 * 8 7 6 10 10 N 1.34779 * 120.00204 * 0.22353 * 8 7 6 11 11 C 1.46500 * 119.99876 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.70998 * 35.00243 * 11 10 8 13 13 C 1.53298 * 109.71485 * 274.40126 * 11 10 8 14 14 C 1.52630 * 108.50436 * 176.52943 * 13 11 10 15 15 C 1.52985 * 110.93286 * 62.20515 * 14 13 11 16 16 H 1.08997 * 112.42843 * 73.38473 * 15 14 13 17 17 C 1.55838 * 106.37121 * 198.11125 * 15 14 13 18 18 N 1.47615 * 104.47046 * 77.05738 * 17 15 14 19 19 C 1.36942 * 125.72613 * 204.85042 * 18 17 15 20 20 H 1.08006 * 120.00059 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00146 * 0.02562 * 19 18 17 22 22 N 1.31619 * 119.99647 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00040 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47089 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46981 * 120.00131 * 23 21 19 26 26 H 1.48497 * 109.46950 * 239.99986 * 23 21 19 27 27 C 1.47427 * 108.54715 * 24.87105 * 18 17 15 28 28 C 1.53368 * 106.51520 * 359.32690 * 27 18 17 29 29 H 1.09006 * 108.95409 * 91.97494 * 28 27 18 30 30 C 1.50895 * 113.03881 * 212.45244 * 28 27 18 31 31 C 1.39677 * 120.49144 * 262.18823 * 3 2 1 32 32 H 4.52738 * 13.92966 * 0.02562 * 4 2 1 33 33 H 1.08000 * 119.55865 * 0.02562 * 4 3 2 34 34 H 1.08005 * 119.56221 * 179.97438 * 6 5 4 35 35 H 0.96997 * 120.00031 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.62988 * 296.23077 * 13 11 10 37 37 H 1.08992 * 109.63043 * 56.62952 * 13 11 10 38 38 H 1.08995 * 109.18357 * 182.58052 * 14 13 11 39 39 H 1.08996 * 109.18289 * 301.88226 * 14 13 11 40 40 H 1.08996 * 110.43801 * 195.80551 * 17 15 14 41 41 H 1.09005 * 110.43162 * 318.31492 * 17 15 14 42 42 H 0.97001 * 119.99358 * 179.97438 * 22 21 19 43 43 H 1.09006 * 110.04813 * 240.06206 * 27 18 17 44 44 H 1.09001 * 110.04904 * 118.59373 * 27 18 17 45 45 H 1.09007 * 109.09364 * 305.34462 * 30 28 27 46 46 H 1.09002 * 109.02705 * 186.42157 * 30 28 27 47 47 H 1.08002 * 120.91467 * 359.95567 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3146 -0.1629 -1.1921 5 7 4.6320 -0.1631 -1.2011 6 6 5.3384 -0.0113 -0.0996 7 6 4.7113 0.1632 1.1354 8 6 5.5126 0.3387 2.3655 9 8 4.9573 0.4858 3.4367 10 7 6.8588 0.3354 2.2992 11 6 7.6527 0.5087 3.5181 12 1 7.1480 0.0290 4.3568 13 6 7.8335 2.0029 3.8095 14 6 8.5878 2.1515 5.1280 15 6 9.9829 1.5310 5.0325 16 1 10.6661 2.1338 4.4342 17 6 10.4684 1.3141 6.4973 18 7 9.7422 0.1123 6.9525 19 6 9.4528 -0.2023 8.2535 20 1 8.9144 -1.1101 8.4827 21 6 9.8515 0.6455 9.2777 22 7 10.5072 1.7520 8.9984 23 14 9.4562 0.2167 11.0524 24 1 8.7166 -1.0701 11.0977 25 1 10.7187 0.0890 11.8238 26 1 8.6197 1.2903 11.6464 27 6 9.3811 -0.6928 5.7714 28 6 9.9015 0.0710 4.5475 29 1 10.9060 -0.2804 4.3117 30 6 9.0358 -0.1122 3.3252 31 6 3.3146 0.1645 1.1924 32 1 -1.0500 0.0005 -0.0002 33 1 2.7754 -0.2902 -2.1192 34 1 6.4171 -0.0182 -0.1532 35 1 7.3019 0.2183 1.4443 36 1 8.4060 2.4660 3.0058 37 1 6.8574 2.4816 3.8867 38 1 8.6824 3.2102 5.3691 39 1 8.0281 1.6526 5.9190 40 1 11.5441 1.1401 6.5200 41 1 10.2078 2.1732 7.1157 42 1 10.7855 2.3446 9.7141 43 1 8.2982 -0.8025 5.7108 44 1 9.8537 -1.6733 5.8288 45 1 8.9230 -1.1776 3.1245 46 1 9.5220 0.3600 2.4714 47 1 2.7977 0.2939 2.1318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980152511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:47 Heat of formation + Delta-G solvation = 55.175770 kcal Electronic energy + Delta-G solvation = -28659.902874 eV Core-core repulsion = 24808.527704 eV Total energy + Delta-G solvation = -3851.375170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.88368 -41.01259 -39.88287 -37.02865 -35.49656 -34.96990 -33.72102 -33.12665 -32.25167 -31.57160 -30.46939 -27.67192 -26.90183 -25.70203 -25.02353 -23.66961 -22.95512 -22.08305 -21.61313 -20.47566 -19.45683 -18.86278 -18.39145 -18.08777 -17.69768 -16.89062 -16.78966 -16.39026 -16.16436 -15.77708 -15.53302 -15.28898 -15.12768 -14.97076 -14.67546 -14.31775 -13.99650 -13.78905 -13.70421 -13.60536 -13.28808 -13.05690 -12.93657 -12.71410 -12.67481 -12.48724 -12.16671 -12.11592 -11.84262 -11.79188 -11.72996 -11.56321 -11.18683 -11.01832 -10.97050 -10.85457 -10.71875 -10.56149 -10.11041 -9.87676 -8.83690 -7.76632 -5.19527 -0.61533 -0.22713 1.43190 1.44332 1.54314 1.57969 1.63253 2.00357 2.12337 2.48513 2.86373 3.07534 3.27451 3.32088 3.63132 3.64400 3.69008 3.71220 3.73311 3.78301 4.04747 4.10231 4.18936 4.26041 4.32355 4.37618 4.56164 4.59100 4.68172 4.74439 4.76500 4.81675 4.84717 4.94959 5.01537 5.09250 5.14992 5.19857 5.26512 5.37745 5.38046 5.44223 5.46402 5.53893 5.58295 5.76604 5.88688 6.35336 6.44682 6.48419 6.67018 7.13018 7.13322 7.80858 8.44928 9.24571 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018569 B = 0.002310 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.545612 B =12116.052370 C =13027.378552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.208 4.208 3 C -0.048 4.048 4 C 0.150 3.850 5 N -0.491 5.491 6 C 0.151 3.849 7 C -0.189 4.189 8 C 0.561 3.439 9 O -0.578 6.578 10 N -0.697 5.697 11 C 0.150 3.850 12 H 0.055 0.945 13 C -0.112 4.112 14 C -0.095 4.095 15 C -0.096 4.096 16 H 0.106 0.894 17 C 0.155 3.845 18 N -0.623 5.623 19 C -0.234 4.234 20 H 0.073 0.927 21 C -0.068 4.068 22 N -0.946 5.946 23 Si 0.975 3.025 24 H -0.270 1.270 25 H -0.290 1.290 26 H -0.292 1.292 27 C 0.132 3.868 28 C -0.078 4.078 29 H 0.082 0.918 30 C -0.098 4.098 31 C -0.012 4.012 32 H 0.263 0.737 33 H 0.192 0.808 34 H 0.197 0.803 35 H 0.418 0.582 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.029 0.971 40 H -0.017 1.017 41 H 0.072 0.928 42 H 0.246 0.754 43 H 0.016 0.984 44 H 0.019 0.981 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.494 -2.442 -26.699 29.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.209 4.209 3 C -0.050 4.050 4 C -0.007 4.007 5 N -0.198 5.198 6 C -0.006 4.006 7 C -0.194 4.194 8 C 0.348 3.652 9 O -0.459 6.459 10 N -0.348 5.348 11 C 0.045 3.955 12 H 0.073 0.927 13 C -0.150 4.150 14 C -0.133 4.133 15 C -0.115 4.115 16 H 0.124 0.876 17 C 0.030 3.970 18 N -0.349 5.349 19 C -0.364 4.364 20 H 0.091 0.909 21 C -0.260 4.260 22 N -0.596 5.596 23 Si 0.804 3.196 24 H -0.195 1.195 25 H -0.217 1.217 26 H -0.219 1.219 27 C 0.007 3.993 28 C -0.097 4.097 29 H 0.101 0.899 30 C -0.136 4.136 31 C -0.038 4.038 32 H 0.279 0.721 33 H 0.209 0.791 34 H 0.214 0.786 35 H 0.257 0.743 36 H 0.112 0.888 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.001 0.999 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.034 0.966 44 H 0.037 0.963 45 H 0.101 0.899 46 H 0.127 0.873 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.371 -2.416 -26.536 29.377 hybrid contribution -0.525 -0.061 2.441 2.498 sum -12.896 -2.477 -24.095 27.440 Atomic orbital electron populations 1.25880 0.96504 0.95824 0.95693 1.19884 0.92025 1.04299 1.04666 1.16945 0.88938 1.04705 0.94391 1.23588 0.89609 0.89857 0.97641 1.67838 1.07984 1.13739 1.30241 1.23529 1.01946 0.89626 0.85520 1.20810 0.94391 1.09026 0.95166 1.18308 0.82892 0.76047 0.87950 1.90823 1.72209 1.51165 1.31669 1.45734 1.04803 1.72523 1.11760 1.20891 0.92034 0.96090 0.86461 0.92680 1.21780 0.99515 0.95830 0.97871 1.21213 0.95565 0.99688 0.96830 1.22501 0.96753 0.95687 0.96592 0.87558 1.22056 0.91526 0.91137 0.92281 1.44871 1.65389 1.23301 1.01324 1.19440 1.29337 1.04610 0.82983 0.90878 1.25561 1.01224 0.97461 1.01776 1.70050 1.45006 1.13884 1.30701 0.85048 0.77075 0.77392 0.80091 1.19509 1.21665 1.21936 1.21442 0.96591 0.93872 0.87355 1.21190 1.00012 0.95093 0.93398 0.89925 1.21160 0.92277 1.02169 0.97956 1.21865 0.92977 0.90331 0.98607 0.72063 0.79138 0.78636 0.74268 0.88783 0.93725 0.92888 0.95205 0.99881 0.90954 0.94444 0.96568 0.96279 0.89913 0.87303 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 19.25 74.32 1.43 0.12 16 2 C -0.21 -3.35 13.27 30.02 0.40 -2.95 16 3 C -0.05 -0.83 5.73 -21.35 -0.12 -0.96 16 4 C 0.15 2.13 10.91 85.05 0.93 3.06 16 5 N -0.49 -7.52 10.33 -193.75 -2.00 -9.52 16 6 C 0.15 2.11 10.71 85.04 0.91 3.02 16 7 C -0.19 -3.70 5.88 -20.03 -0.12 -3.82 16 8 C 0.56 14.09 7.76 86.79 0.67 14.76 16 9 O -0.58 -20.72 16.08 -3.87 -0.06 -20.79 16 10 N -0.70 -13.38 5.05 -445.17 -2.25 -15.63 16 11 C 0.15 3.85 2.31 45.04 0.10 3.96 16 12 H 0.05 1.94 6.20 -2.39 -0.01 1.93 16 13 C -0.11 -3.07 5.53 30.57 0.17 -2.90 16 14 C -0.09 -3.41 4.81 30.47 0.15 -3.26 16 15 C -0.10 -3.37 3.72 -9.46 -0.04 -3.41 16 16 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 17 C 0.15 7.66 5.18 87.15 0.45 8.11 16 18 N -0.62 -32.89 2.93 -690.44 -2.02 -34.92 16 19 C -0.23 -13.71 10.28 84.03 0.86 -12.84 16 20 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 22 N -0.95 -57.76 10.09 21.65 0.22 -57.54 16 23 Si 0.98 47.59 29.55 68.60 2.03 49.62 16 24 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 27 C 0.13 5.54 6.24 86.33 0.54 6.07 16 28 C -0.08 -2.39 2.69 -11.00 -0.03 -2.42 16 29 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 30 C -0.10 -2.06 4.83 29.86 0.14 -1.92 16 31 C -0.01 -0.24 9.44 22.99 0.22 -0.03 16 32 H 0.26 0.40 7.80 -4.42 -0.03 0.37 16 33 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.20 1.21 6.41 -2.91 -0.02 1.19 16 35 H 0.42 4.20 6.66 -92.71 -0.62 3.58 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.03 1.35 7.16 -2.39 -0.02 1.33 16 40 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 41 H 0.07 4.12 5.68 -2.38 -0.01 4.11 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.02 0.71 6.50 -2.38 -0.02 0.69 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 46 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.14 3.20 7.73 -2.91 -0.02 3.17 16 Total: -1.00 -80.48 381.00 3.42 -77.06 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.37 Total: 10.63 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 7.14 Total: 1.09 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -6.05 Total: -117.61 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.06 Total: -20.79 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -80.48 3.42 -77.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980152511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.237 kcal (2) G-P(sol) polarization free energy of solvation -80.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds