Wall clock time and date at job start Sat Apr 11 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39981 * 120.46256 * 92.91426 * 3 2 1 5 5 C 1.38215 * 118.36905 * 179.97438 * 4 3 2 6 6 C 1.39495 * 119.20683 * 359.97438 * 5 4 3 7 7 C 1.47988 * 119.57157 * 180.02562 * 6 5 4 8 8 O 1.21546 * 120.00033 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00080 * 180.02562 * 7 6 5 10 10 C 1.46932 * 125.40640 * 359.69349 * 9 7 6 11 11 C 1.54784 * 107.29010 * 181.45829 * 10 9 7 12 12 H 1.09004 * 111.46142 * 219.83418 * 11 10 9 13 13 C 1.52901 * 107.91800 * 97.49563 * 11 10 9 14 14 C 1.52842 * 109.68992 * 192.21673 * 13 11 10 15 15 C 1.52675 * 108.57823 * 65.12146 * 14 13 11 16 16 C 1.50458 * 111.09649 * 300.52561 * 15 14 13 17 17 H 1.08996 * 106.96946 * 284.66482 * 16 15 14 18 18 N 1.46498 * 108.91347 * 168.14801 * 16 15 14 19 19 C 1.36937 * 119.99600 * 77.89133 * 18 16 15 20 20 H 1.07995 * 120.00195 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99946 * 179.97438 * 19 18 16 22 22 N 1.31622 * 119.99997 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00324 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47009 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47057 * 120.00134 * 23 21 19 26 26 H 1.48493 * 109.47680 * 240.00262 * 23 21 19 27 27 C 1.49577 * 116.12238 * 45.65183 * 16 15 14 28 28 H 1.09004 * 107.24827 * 202.28414 * 27 16 15 29 29 C 1.47243 * 125.40273 * 179.97438 * 9 7 6 30 30 N 1.32824 * 120.86097 * 359.97438 * 6 5 4 31 31 C 1.31296 * 121.78305 * 359.76155 * 30 6 5 32 32 H 4.52933 * 13.94550 * 0.02562 * 4 2 1 33 33 H 1.08003 * 120.82072 * 359.95529 * 4 3 2 34 34 H 1.08005 * 120.39787 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.87982 * 301.00904 * 10 9 7 36 36 H 1.09006 * 109.88030 * 62.16416 * 10 9 7 37 37 H 1.09005 * 109.42795 * 312.28322 * 13 11 10 38 38 H 1.09002 * 109.43756 * 72.18755 * 13 11 10 39 39 H 1.08996 * 109.62196 * 184.84903 * 14 13 11 40 40 H 1.09002 * 109.61698 * 305.21341 * 14 13 11 41 41 H 1.08992 * 109.20789 * 60.29983 * 15 14 13 42 42 H 1.08994 * 109.20736 * 179.65973 * 15 14 13 43 43 H 0.97001 * 120.00366 * 257.88201 * 18 16 15 44 44 H 0.96999 * 120.00532 * 180.02562 * 22 21 19 45 45 H 1.08996 * 110.24502 * 317.52617 * 29 9 7 46 46 H 1.08991 * 110.23931 * 79.43238 * 29 9 7 47 47 H 1.08006 * 119.64909 * 180.26529 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3156 0.0623 -1.2050 5 6 4.6969 0.0609 -1.1546 6 6 5.3326 -0.0009 0.0855 7 6 6.8111 -0.0023 0.1490 8 8 7.4634 0.0506 -0.8752 9 7 7.4344 -0.0622 1.3425 10 6 6.7662 -0.1232 2.6497 11 6 7.8729 -0.1418 3.7316 12 1 7.6261 -0.8268 4.5428 13 6 8.0490 1.2862 4.2490 14 6 9.3231 1.3764 5.0885 15 6 10.5231 1.1191 4.1804 16 6 10.4369 -0.2401 3.5409 17 1 10.6939 -0.9698 4.3087 18 7 11.4403 -0.3290 2.4772 19 6 12.7550 -0.5460 2.7927 20 1 13.0522 -0.6512 3.8255 21 6 13.7057 -0.6307 1.7848 22 7 13.3436 -0.5020 0.5259 23 14 15.4993 -0.9260 2.2150 24 1 15.6434 -1.0340 3.6891 25 1 15.9597 -2.1868 1.5795 26 1 16.3206 0.2072 1.7187 27 6 9.1081 -0.6136 2.9647 28 1 9.0727 -1.7019 2.9127 29 6 8.8930 -0.0712 1.5436 30 7 4.6283 -0.0574 1.2102 31 6 3.3153 -0.0531 1.2049 32 1 -1.0500 0.0005 0.0001 33 1 2.7967 0.1095 -2.1510 34 1 5.2770 0.1079 -2.0644 35 1 6.1304 0.7522 2.7821 36 1 6.1682 -1.0319 2.7183 37 1 8.1218 1.9715 3.4044 38 1 7.1906 1.5579 4.8634 39 1 9.4027 2.3709 5.5272 40 1 9.2931 0.6282 5.8806 41 1 10.5455 1.8729 3.3935 42 1 11.4386 1.1870 4.7680 43 1 11.1734 -0.2342 1.5494 44 1 14.0078 -0.5616 -0.1784 45 1 9.3703 -0.7252 0.8140 46 1 9.2913 0.9399 1.4605 47 1 2.7771 -0.0959 2.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992853085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:30 Heat of formation + Delta-G solvation = 75.555629 kcal Electronic energy + Delta-G solvation = -29097.324392 eV Core-core repulsion = 25246.832959 eV Total energy + Delta-G solvation = -3850.491433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.01436 -40.01434 -38.32760 -35.58038 -34.71763 -33.94315 -32.60318 -31.63846 -31.27879 -30.38398 -28.73948 -26.79495 -25.76693 -24.03933 -23.87812 -23.36565 -21.61911 -20.80513 -20.11631 -19.53616 -18.27142 -17.69295 -16.99912 -16.82975 -16.07746 -15.93334 -15.51600 -15.14923 -14.80265 -14.66445 -14.19345 -13.84277 -13.73649 -13.64721 -13.57257 -13.17160 -13.01614 -12.75363 -12.62222 -12.38592 -12.01500 -11.85112 -11.75713 -11.36306 -11.14497 -10.95430 -10.92135 -10.79135 -10.72839 -10.28603 -10.19892 -10.18024 -10.09882 -9.80059 -9.66575 -9.50618 -9.49335 -9.17812 -8.82478 -8.37396 -6.91746 -5.71362 -3.01012 0.01653 0.84566 2.20815 2.25303 2.98563 3.01649 3.46286 3.51520 3.54134 3.65341 3.68984 3.92112 4.36602 4.41321 4.59519 4.68838 4.71291 4.83115 4.92549 4.95007 5.27687 5.35947 5.39209 5.46767 5.52939 5.58891 5.62435 5.67973 5.71354 5.77120 5.87040 5.90406 5.94537 6.08043 6.14606 6.16615 6.20381 6.32742 6.38400 6.48556 6.51650 6.57763 6.68197 6.80324 6.97781 6.98127 7.22054 7.36116 7.64421 7.75191 8.20119 8.46548 9.57567 10.14254 10.48421 11.51031 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.002620 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.290856 B =10683.642862 C =11901.818500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.154 4.154 3 C -0.025 4.025 4 C -0.059 4.059 5 C -0.109 4.109 6 C 0.097 3.903 7 C 0.574 3.426 8 O -0.528 6.528 9 N -0.592 5.592 10 C 0.121 3.879 11 C -0.094 4.094 12 H 0.090 0.910 13 C -0.109 4.109 14 C -0.116 4.116 15 C -0.130 4.130 16 C 0.191 3.809 17 H 0.040 0.960 18 N -0.730 5.730 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.087 4.087 28 H 0.070 0.930 29 C 0.117 3.883 30 N -0.448 5.448 31 C 0.122 3.878 32 H 0.227 0.773 33 H 0.146 0.854 34 H 0.156 0.844 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.545 2.121 3.514 26.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.154 4.154 3 C -0.028 4.028 4 C -0.085 4.085 5 C -0.130 4.130 6 C -0.041 4.041 7 C 0.360 3.640 8 O -0.404 6.404 9 N -0.324 5.324 10 C -0.001 4.001 11 C -0.113 4.113 12 H 0.108 0.892 13 C -0.146 4.146 14 C -0.155 4.155 15 C -0.170 4.170 16 C 0.081 3.919 17 H 0.058 0.942 18 N -0.372 5.372 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.107 4.107 28 H 0.089 0.911 29 C -0.005 4.005 30 N -0.159 5.159 31 C -0.039 4.039 32 H 0.244 0.756 33 H 0.163 0.837 34 H 0.173 0.827 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.220 0.780 44 H 0.065 0.935 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -25.511 2.048 3.741 25.865 hybrid contribution 0.264 -0.095 -0.927 0.968 sum -25.247 1.953 2.814 25.478 Atomic orbital electron populations 1.24955 0.95752 0.98261 0.98457 1.19687 0.91584 1.02050 1.02123 1.17162 0.87990 1.02539 0.95084 1.21668 0.93468 0.95337 0.97996 1.22087 0.94424 0.97083 0.99382 1.21353 0.94546 0.98592 0.89583 1.17420 0.85417 0.78284 0.82905 1.90853 1.65675 1.50638 1.33273 1.48263 1.08416 1.70038 1.05663 1.22332 0.94301 1.02529 0.80987 1.21965 0.94442 0.97866 0.97042 0.89175 1.21541 0.97789 0.95706 0.99591 1.21431 0.95234 1.00706 0.98083 1.21685 0.96746 1.00101 0.98505 1.18792 0.86727 0.94804 0.91547 0.94247 1.42693 1.03608 1.86785 1.04156 1.19259 0.84054 1.41000 0.92582 0.91150 1.24747 0.97975 1.02977 0.95289 1.69673 1.32918 1.57002 0.98284 0.86153 0.85586 0.77342 0.77311 1.20618 1.21967 1.21965 1.21084 0.94904 1.01023 0.93656 0.91138 1.22035 0.78377 1.02464 0.97609 1.67913 1.07821 1.10484 1.29643 1.23008 0.89259 0.94491 0.97112 0.75615 0.83667 0.82661 0.90465 0.91103 0.91986 0.92363 0.92697 0.92348 0.92463 0.92143 0.77962 0.93539 0.89573 0.90790 0.81626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 19.25 29.55 0.57 -0.33 16 2 C -0.15 -1.21 13.28 -38.84 -0.52 -1.73 16 3 C -0.03 -0.22 5.75 -106.68 -0.61 -0.84 16 4 C -0.06 -0.51 9.89 -38.94 -0.39 -0.90 16 5 C -0.11 -1.19 9.61 -39.12 -0.38 -1.57 16 6 C 0.10 1.27 6.72 -82.97 -0.56 0.72 16 7 C 0.57 9.51 7.83 -12.26 -0.10 9.42 16 8 O -0.53 -10.51 16.61 5.33 0.09 -10.43 16 9 N -0.59 -9.40 3.33 -172.31 -0.57 -9.97 16 10 C 0.12 1.54 4.88 -2.87 -0.01 1.52 16 11 C -0.09 -1.19 3.28 -89.81 -0.29 -1.48 16 12 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 13 C -0.11 -1.33 4.82 -26.86 -0.13 -1.46 16 14 C -0.12 -1.55 5.95 -26.98 -0.16 -1.71 16 15 C -0.13 -2.28 5.26 -28.17 -0.15 -2.43 16 16 C 0.19 3.68 2.50 -70.89 -0.18 3.50 16 17 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 18 N -0.73 -18.03 5.00 -56.34 -0.28 -18.31 16 19 C -0.24 -6.55 9.78 -15.06 -0.15 -6.70 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 23 Si 0.90 22.62 29.55 -169.99 -5.02 17.60 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 C -0.09 -1.43 2.43 -92.07 -0.22 -1.65 16 28 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 29 C 0.12 2.12 4.74 -3.32 -0.02 2.10 16 30 N -0.45 -5.12 6.77 -9.49 -0.06 -5.18 16 31 C 0.12 1.10 10.91 -17.15 -0.19 0.91 16 32 H 0.23 0.41 7.80 -54.09 -0.42 -0.01 16 33 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.16 1.64 7.63 -52.48 -0.40 1.24 16 35 H 0.08 0.92 6.95 -51.93 -0.36 0.56 16 36 H 0.07 0.85 7.53 -51.93 -0.39 0.46 16 37 H 0.06 0.85 8.00 -51.93 -0.42 0.43 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.38 10.17 5.67 -40.82 -0.23 9.94 16 44 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.09 1.81 7.55 -51.93 -0.39 1.42 16 46 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 47 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -33.33 384.46 -9.70 -43.04 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.80 Total: 8.39 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -3.57 Total: -3.12 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.20 Total: -61.27 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.33 -9.70 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992853085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.594 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds