Wall clock time and date at job start Sat Apr 11 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39716 * 119.58974 * 137.52520 * 3 2 1 5 5 C 1.37976 * 119.20220 * 180.02562 * 4 3 2 6 6 C 1.40246 * 118.39725 * 359.97438 * 5 4 3 7 7 C 1.47670 * 120.43997 * 180.02562 * 6 5 4 8 8 O 1.21566 * 120.00167 * 154.69490 * 7 6 5 9 9 N 1.34775 * 119.99830 * 334.68962 * 7 6 5 10 10 C 1.47073 * 125.44662 * 3.97722 * 9 7 6 11 11 C 1.55062 * 105.85855 * 199.56286 * 10 9 7 12 12 H 1.09000 * 111.61585 * 209.09469 * 11 10 9 13 13 C 1.52899 * 107.38319 * 85.78813 * 11 10 9 14 14 C 1.52854 * 109.62395 * 193.23062 * 13 11 10 15 15 C 1.52650 * 108.65397 * 64.95045 * 14 13 11 16 16 C 1.51493 * 110.89796 * 300.20148 * 15 14 13 17 17 H 1.08997 * 108.16014 * 285.59504 * 16 15 14 18 18 N 1.46498 * 108.30341 * 168.54460 * 16 15 14 19 19 C 1.36935 * 119.99987 * 79.21401 * 18 16 15 20 20 H 1.07997 * 120.00175 * 359.97438 * 19 18 16 21 21 C 1.38816 * 120.00099 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99556 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00106 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47433 * 59.99934 * 23 21 19 25 25 H 1.48497 * 109.47241 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47243 * 299.99841 * 23 21 19 27 27 C 1.49682 * 115.37143 * 47.01649 * 16 15 14 28 28 H 1.09007 * 107.25824 * 200.79788 * 27 16 15 29 29 C 1.47139 * 125.44094 * 183.66585 * 9 7 6 30 30 C 1.39655 * 119.11720 * 0.02562 * 6 5 4 31 31 N 1.31477 * 120.71356 * 359.97438 * 30 6 5 32 32 H 4.51253 * 14.17570 * 359.97438 * 4 2 1 33 33 H 1.08001 * 120.40301 * 359.97438 * 4 3 2 34 34 H 1.08001 * 120.80346 * 179.97438 * 5 4 3 35 35 H 1.09002 * 110.16968 * 318.65714 * 10 9 7 36 36 H 1.09000 * 110.17248 * 80.38483 * 10 9 7 37 37 H 1.08995 * 109.44381 * 313.28183 * 13 11 10 38 38 H 1.09004 * 109.44356 * 73.18196 * 13 11 10 39 39 H 1.09006 * 109.60899 * 305.20662 * 14 13 11 40 40 H 1.08996 * 109.60970 * 184.70452 * 14 13 11 41 41 H 1.08999 * 109.19553 * 179.83669 * 15 14 13 42 42 H 1.09002 * 109.15304 * 60.53848 * 15 14 13 43 43 H 0.96998 * 119.99840 * 259.21413 * 18 16 15 44 44 H 0.97002 * 119.99412 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.98008 * 299.88764 * 29 9 7 46 46 H 1.09001 * 109.97914 * 61.17496 * 29 9 7 47 47 H 1.07998 * 119.64038 * 180.27523 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2955 0.8971 -0.8204 5 6 4.6752 0.8904 -0.8145 6 6 5.3343 -0.0225 0.0216 7 6 6.8097 -0.0680 0.0639 8 8 7.3768 -0.4843 1.0553 9 7 7.5275 0.3518 -0.9967 10 6 6.9718 0.9519 -2.2191 11 6 8.0704 0.8003 -3.3028 12 1 8.0166 1.5981 -4.0435 13 6 7.9034 -0.5831 -3.9322 14 6 9.1403 -0.9212 -4.7642 15 6 10.3415 -1.0354 -3.8292 16 6 10.5753 0.2653 -3.0886 17 1 11.0102 0.9804 -3.7868 18 7 11.5479 0.0186 -2.0212 19 6 12.8837 -0.0496 -2.3144 20 1 13.2203 0.0782 -3.3326 21 6 13.8053 -0.2839 -1.3031 22 7 13.3949 -0.4411 -0.0624 23 14 15.6274 -0.3776 -1.7032 24 1 16.0698 0.9079 -2.3007 25 1 16.3949 -0.6354 -0.4583 26 1 15.8662 -1.4803 -2.6686 27 6 9.3563 0.8848 -2.4797 28 1 9.5748 1.9409 -2.3215 29 6 8.9928 0.2889 -1.1141 30 6 4.5766 -0.8880 0.8137 31 7 3.2628 -0.8517 0.7806 32 1 -1.0500 -0.0008 0.0001 33 1 2.7551 1.5864 -1.4523 34 1 5.2343 1.5718 -1.4387 35 1 6.0694 0.4207 -2.5218 36 1 6.7491 2.0059 -2.0527 37 1 7.7808 -1.3273 -3.1453 38 1 7.0224 -0.5858 -4.5740 39 1 9.3181 -0.1305 -5.4932 40 1 8.9865 -1.8693 -5.2796 41 1 11.2286 -1.2794 -4.4136 42 1 10.1582 -1.8310 -3.1070 43 1 11.2455 -0.0966 -1.1067 44 1 14.0389 -0.6053 0.6442 45 1 9.4556 0.8704 -0.3168 46 1 9.3265 -0.7474 -1.0616 47 1 5.0754 -1.5913 1.4640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992862129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:34 Heat of formation + Delta-G solvation = 60.057455 kcal Electronic energy + Delta-G solvation = -29192.120514 eV Core-core repulsion = 25340.957029 eV Total energy + Delta-G solvation = -3851.163485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.19184 -41.09823 -39.63602 -37.14013 -35.55118 -34.97840 -33.95386 -33.40006 -32.20172 -31.47439 -30.45142 -28.21520 -26.91298 -25.75125 -24.87963 -24.65399 -22.81444 -22.23322 -21.18464 -20.44156 -19.74581 -19.23242 -18.30445 -17.59023 -17.37144 -17.19148 -16.77148 -16.61506 -16.18592 -15.51670 -15.41567 -15.33542 -15.13476 -15.01263 -14.81731 -14.40061 -14.20848 -14.15470 -13.85562 -13.49445 -13.30982 -13.17441 -12.80556 -12.74921 -12.48344 -12.33000 -12.29259 -12.14631 -12.02524 -11.87914 -11.85870 -11.37855 -11.29105 -11.18518 -11.07146 -10.95966 -10.73028 -10.61839 -10.03727 -9.70734 -8.99553 -7.93125 -5.22125 -0.75793 0.07703 1.36731 1.44886 1.48164 1.54275 1.61718 1.74957 2.06458 2.55539 2.87453 2.90349 3.25629 3.38914 3.41428 3.51418 3.59502 3.73647 3.74106 3.90759 4.03018 4.11838 4.19150 4.27882 4.30343 4.38962 4.47023 4.55552 4.60201 4.63785 4.69450 4.73763 4.79330 4.86677 4.89398 4.95299 5.00885 5.06241 5.15902 5.20825 5.30464 5.36326 5.43801 5.44299 5.53464 5.59816 5.73939 6.28658 6.35363 6.45736 6.66241 6.92612 7.33899 8.11687 8.31991 9.30217 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020167 B = 0.002597 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.085995 B =10779.638228 C =11720.167310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.217 4.217 3 C 0.231 3.769 4 C -0.137 4.137 5 C -0.040 4.040 6 C -0.182 4.182 7 C 0.567 3.433 8 O -0.584 6.584 9 N -0.601 5.601 10 C 0.083 3.917 11 C -0.076 4.076 12 H 0.140 0.860 13 C -0.108 4.108 14 C -0.107 4.107 15 C -0.125 4.125 16 C 0.187 3.813 17 H 0.047 0.953 18 N -0.746 5.746 19 C -0.233 4.233 20 H 0.079 0.921 21 C -0.082 4.082 22 N -0.974 5.974 23 Si 0.972 3.028 24 H -0.275 1.275 25 H -0.301 1.301 26 H -0.279 1.279 27 C -0.082 4.082 28 H 0.075 0.925 29 C 0.129 3.871 30 C 0.151 3.849 31 N -0.500 5.500 32 H 0.272 0.728 33 H 0.186 0.814 34 H 0.191 0.809 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.036 0.964 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.025 0.975 43 H 0.371 0.629 44 H 0.248 0.752 45 H 0.041 0.959 46 H 0.038 0.962 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.103 6.673 -11.297 31.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.218 4.218 3 C 0.097 3.903 4 C -0.157 4.157 5 C -0.065 4.065 6 C -0.187 4.187 7 C 0.356 3.644 8 O -0.465 6.465 9 N -0.332 5.332 10 C -0.037 4.037 11 C -0.095 4.095 12 H 0.158 0.842 13 C -0.146 4.146 14 C -0.145 4.145 15 C -0.165 4.165 16 C 0.080 3.920 17 H 0.065 0.935 18 N -0.387 5.387 19 C -0.365 4.365 20 H 0.097 0.903 21 C -0.274 4.274 22 N -0.625 5.625 23 Si 0.801 3.199 24 H -0.200 1.200 25 H -0.228 1.228 26 H -0.205 1.205 27 C -0.102 4.102 28 H 0.094 0.906 29 C 0.005 3.995 30 C -0.008 4.008 31 N -0.209 5.209 32 H 0.288 0.712 33 H 0.203 0.797 34 H 0.207 0.793 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.055 0.945 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.204 0.796 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -28.104 5.887 -10.294 30.503 hybrid contribution 2.306 -0.273 0.820 2.462 sum -25.798 5.614 -9.474 28.050 Atomic orbital electron populations 1.25991 0.96309 0.94104 0.93919 1.19612 0.91523 1.05286 1.05361 1.17270 0.89325 0.91626 0.92118 1.22372 0.93972 0.99547 0.99771 1.22674 0.94734 0.95175 0.93944 1.20815 0.92422 1.02499 1.02994 1.18157 0.87086 0.77360 0.81776 1.90822 1.73042 1.49148 1.33476 1.48348 1.07159 1.60190 1.17534 1.23265 0.98164 0.99761 0.82536 1.22123 0.90603 1.00090 0.96650 0.84238 1.21548 0.98785 0.95321 0.98922 1.21379 0.93519 1.02249 0.97381 1.21731 0.98366 0.98353 0.98028 1.19340 0.88108 0.94787 0.89804 0.93499 1.42990 1.02751 1.86407 1.06557 1.19596 0.84429 1.38806 0.93659 0.90336 1.25589 1.02334 1.04059 0.95422 1.69846 1.34234 1.58178 1.00250 0.85230 0.80330 0.78207 0.76132 1.20047 1.22757 1.20519 1.20987 0.95729 1.00435 0.93030 0.90627 1.21523 0.79648 0.99950 0.98335 1.22809 0.88248 0.95571 0.94176 1.67837 1.09390 1.22623 1.21022 0.71199 0.79679 0.79268 0.87327 0.87413 0.94484 0.88235 0.89946 0.91626 0.94055 0.95637 0.79560 0.94317 0.94015 0.94354 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 19.25 74.32 1.43 0.61 16 2 C -0.22 -3.66 13.43 30.02 0.40 -3.26 16 3 C 0.23 4.67 6.59 40.58 0.27 4.93 16 4 C -0.14 -1.82 9.77 22.56 0.22 -1.60 16 5 C -0.04 -0.60 8.11 22.70 0.18 -0.41 16 6 C -0.18 -4.41 5.75 -19.96 -0.11 -4.52 16 7 C 0.57 18.17 7.66 86.74 0.66 18.83 16 8 O -0.58 -25.08 16.95 -3.92 -0.07 -25.15 16 9 N -0.60 -16.73 3.31 -817.57 -2.70 -19.43 16 10 C 0.08 1.28 4.34 86.98 0.38 1.66 16 11 C -0.08 -1.30 3.40 -10.15 -0.03 -1.34 16 12 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 13 C -0.11 -2.00 4.89 30.51 0.15 -1.85 16 14 C -0.11 -2.38 5.94 30.43 0.18 -2.20 16 15 C -0.12 -4.25 5.30 29.98 0.16 -4.09 16 16 C 0.19 6.90 2.51 43.43 0.11 7.01 16 17 H 0.05 1.71 8.06 -2.39 -0.02 1.69 16 18 N -0.75 -37.59 4.91 -330.41 -1.62 -39.22 16 19 C -0.23 -12.96 9.80 84.03 0.82 -12.13 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 21 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 22 N -0.97 -62.27 13.06 21.65 0.28 -61.99 16 23 Si 0.97 47.25 29.55 68.60 2.03 49.28 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 26 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 27 C -0.08 -2.39 2.34 -11.77 -0.03 -2.41 16 28 H 0.08 2.16 8.12 -2.38 -0.02 2.14 16 29 C 0.13 4.62 4.85 86.38 0.42 5.04 16 30 C 0.15 4.01 10.75 85.09 0.91 4.93 16 31 N -0.50 -12.89 10.26 -188.05 -1.93 -14.82 16 32 H 0.27 -0.22 7.80 -4.42 -0.03 -0.25 16 33 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.19 1.52 4.36 -2.91 -0.01 1.51 16 35 H 0.11 1.15 6.07 -2.39 -0.01 1.13 16 36 H 0.11 0.98 7.05 -2.39 -0.02 0.96 16 37 H 0.04 0.90 7.94 -2.39 -0.02 0.88 16 38 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.37 20.67 5.70 -92.71 -0.53 20.14 16 44 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 45 H 0.04 1.76 8.02 -2.39 -0.02 1.75 16 46 H 0.04 1.67 7.41 -2.39 -0.02 1.66 16 47 H 0.16 4.43 7.85 -2.91 -0.02 4.41 16 Total: -1.00 -84.47 380.98 3.05 -81.42 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.46 Total: 25.07 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 6.59 Total: 4.83 kcal Atomic # 7 Polarization: -129.48 SS G_CDS: -5.97 Total: -135.45 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.07 Total: -25.15 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -84.47 3.05 -81.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992862129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.480 kcal (2) G-P(sol) polarization free energy of solvation -84.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds