Wall clock time and date at job start Sat Apr 11 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39720 * 119.59430 * 50.55690 * 3 2 1 5 5 C 1.37971 * 119.20463 * 179.97438 * 4 3 2 6 6 C 1.40236 * 118.39648 * 359.75420 * 5 4 3 7 7 C 1.47681 * 120.44097 * 180.24506 * 6 5 4 8 8 O 1.21574 * 120.00290 * 198.11106 * 7 6 5 9 9 N 1.34776 * 119.99554 * 18.11546 * 7 6 5 10 10 C 1.48661 * 125.78750 * 5.58418 * 9 7 6 11 11 C 1.53304 * 103.32629 * 155.54334 * 10 9 7 12 12 H 1.08999 * 110.75218 * 284.62684 * 11 10 9 13 13 C 1.51609 * 117.39624 * 156.43137 * 11 10 9 14 14 C 1.53813 * 107.02223 * 183.50359 * 13 11 10 15 15 C 1.52532 * 111.69830 * 57.53789 * 14 13 11 16 16 C 1.51857 * 111.84338 * 306.38587 * 15 14 13 17 17 H 1.08997 * 108.79154 * 297.19244 * 16 15 14 18 18 N 1.46501 * 110.06846 * 176.60737 * 16 15 14 19 19 C 1.36935 * 120.00130 * 86.06739 * 18 16 15 20 20 H 1.08001 * 119.99696 * 359.97438 * 19 18 16 21 21 C 1.38817 * 119.99863 * 180.02562 * 19 18 16 22 22 N 1.31614 * 119.99759 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99689 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47471 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47102 * 119.99560 * 23 21 19 26 26 H 1.48496 * 109.47367 * 239.99815 * 23 21 19 27 27 C 1.51443 * 108.06738 * 56.53040 * 16 15 14 28 28 H 1.09002 * 110.22530 * 55.16525 * 27 16 15 29 29 C 1.48245 * 125.77982 * 185.88973 * 9 7 6 30 30 C 1.39657 * 119.12196 * 0.49055 * 6 5 4 31 31 N 1.31484 * 120.71093 * 359.49811 * 30 6 5 32 32 H 4.51265 * 14.17534 * 0.02562 * 4 2 1 33 33 H 1.08005 * 120.39890 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.80255 * 180.02562 * 5 4 3 35 35 H 1.08995 * 110.62836 * 274.12494 * 10 9 7 36 36 H 1.08999 * 110.62543 * 37.14933 * 10 9 7 37 37 H 1.09006 * 109.94327 * 302.88127 * 13 11 10 38 38 H 1.08999 * 109.94187 * 64.12381 * 13 11 10 39 39 H 1.08996 * 109.03541 * 178.10797 * 14 13 11 40 40 H 1.08995 * 109.03470 * 296.96927 * 14 13 11 41 41 H 1.08996 * 109.04209 * 66.51338 * 15 14 13 42 42 H 1.09000 * 109.04292 * 185.46976 * 15 14 13 43 43 H 0.97001 * 119.99496 * 266.06243 * 18 16 15 44 44 H 0.97006 * 119.99567 * 180.02562 * 22 21 19 45 45 H 1.08997 * 110.17233 * 295.89801 * 29 9 7 46 46 H 1.08995 * 110.17108 * 57.62883 * 29 9 7 47 47 H 1.08002 * 119.64649 * 179.77614 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2964 -0.7709 -0.9382 5 6 4.6761 -0.7639 -0.9313 6 6 5.3342 0.0275 0.0211 7 6 6.8097 0.0728 0.0656 8 8 7.3757 0.4762 1.0630 9 7 7.5286 -0.3330 -0.9998 10 6 6.9754 -0.7366 -2.3192 11 6 8.1412 -0.4863 -3.2828 12 1 8.2599 0.5797 -3.4767 13 6 8.1522 -1.2671 -4.5823 14 6 9.4542 -0.9027 -5.3155 15 6 10.6840 -1.2073 -4.4662 16 6 10.6011 -0.5547 -3.0975 17 1 10.5767 0.5274 -3.2254 18 7 11.7601 -0.9373 -2.2871 19 6 12.9259 -0.2250 -2.3803 20 1 12.9910 0.6186 -3.0515 21 6 14.0242 -0.5879 -1.6128 22 7 13.9448 -1.6163 -0.7953 23 14 15.6147 0.3834 -1.7404 24 1 15.4455 1.4833 -2.7237 25 1 15.9540 0.9542 -0.4122 26 1 16.7091 -0.5153 -2.1873 27 6 9.3259 -1.0248 -2.4294 28 1 9.2961 -2.1140 -2.3985 29 6 9.0048 -0.4584 -1.0522 30 6 4.5759 0.7682 0.9304 31 7 3.2620 0.7357 0.8925 32 1 -1.0500 -0.0001 -0.0009 33 1 2.7565 -1.3650 -1.6608 34 1 5.2357 -1.3503 -1.6451 35 1 6.6986 -1.7908 -2.3133 36 1 6.1196 -0.1153 -2.5830 37 1 8.1298 -2.3368 -4.3736 38 1 7.2921 -0.9880 -5.1909 39 1 9.5120 -1.4735 -6.2423 40 1 9.4419 0.1606 -5.5547 41 1 10.7657 -2.2860 -4.3327 42 1 11.5723 -0.8449 -4.9836 43 1 11.7016 -1.6952 -1.6846 44 1 14.7122 -1.8696 -0.2587 45 1 9.4698 0.5199 -0.9305 46 1 9.3521 -1.1386 -0.2746 47 1 5.0741 1.3777 1.6699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992862133.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:40 Heat of formation + Delta-G solvation = 81.798001 kcal Electronic energy + Delta-G solvation = -28817.502055 eV Core-core repulsion = 24967.281311 eV Total energy + Delta-G solvation = -3850.220744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.12822 -40.07303 -38.49789 -35.80747 -34.31560 -34.04130 -33.14276 -31.58367 -31.23800 -30.33600 -28.99522 -27.00371 -25.93296 -24.36028 -23.85890 -23.24726 -21.11896 -20.68570 -20.06281 -19.72851 -19.63474 -17.53427 -17.08684 -16.77886 -16.53936 -16.04495 -15.47110 -15.07537 -14.77699 -14.60029 -14.31983 -14.29170 -13.97067 -13.84101 -13.65609 -13.21468 -13.09070 -12.71641 -12.57592 -12.46639 -12.17295 -11.91318 -11.64750 -11.45648 -11.28046 -11.02775 -10.93495 -10.85991 -10.62821 -10.36373 -10.32026 -10.25850 -10.21770 -10.16347 -9.80258 -9.74582 -9.50323 -9.23234 -8.92241 -8.65146 -6.99415 -5.78343 -3.07550 0.00991 0.81318 2.19648 2.21017 2.78174 2.97412 3.42734 3.48118 3.48489 3.50690 3.64931 4.10546 4.30574 4.31867 4.43707 4.54748 4.61846 4.63138 4.73005 4.89437 5.10908 5.13420 5.18589 5.28342 5.35215 5.40431 5.50521 5.52929 5.57997 5.63358 5.64258 5.73536 5.80097 5.85725 5.97410 6.02098 6.07294 6.13266 6.18336 6.29734 6.35464 6.48393 6.54046 6.58800 6.83262 6.98867 7.04260 7.37441 7.47784 7.69124 8.04707 8.39548 9.51369 10.07070 10.41661 11.44075 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.002521 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.131678 B =11103.358383 C =12347.345576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.151 4.151 3 C 0.241 3.759 4 C -0.153 4.153 5 C -0.058 4.058 6 C -0.171 4.171 7 C 0.573 3.427 8 O -0.527 6.527 9 N -0.614 5.614 10 C 0.100 3.900 11 C -0.109 4.109 12 H 0.087 0.913 13 C -0.100 4.100 14 C -0.115 4.115 15 C -0.137 4.137 16 C 0.196 3.804 17 H 0.049 0.951 18 N -0.722 5.722 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.292 1.292 27 C -0.102 4.102 28 H 0.079 0.921 29 C 0.126 3.874 30 C 0.165 3.835 31 N -0.473 5.473 32 H 0.231 0.769 33 H 0.146 0.854 34 H 0.162 0.838 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.290 -0.385 -6.381 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.152 4.152 3 C 0.107 3.893 4 C -0.172 4.172 5 C -0.083 4.083 6 C -0.176 4.176 7 C 0.361 3.639 8 O -0.405 6.405 9 N -0.347 5.347 10 C -0.022 4.022 11 C -0.128 4.128 12 H 0.105 0.895 13 C -0.138 4.138 14 C -0.153 4.153 15 C -0.178 4.178 16 C 0.085 3.915 17 H 0.067 0.933 18 N -0.363 5.363 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.122 4.122 28 H 0.097 0.903 29 C 0.006 3.994 30 C 0.005 3.995 31 N -0.181 5.181 32 H 0.247 0.753 33 H 0.164 0.836 34 H 0.179 0.821 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -25.287 0.485 -5.183 25.817 hybrid contribution 1.284 -0.355 -0.478 1.415 sum -24.003 0.130 -5.661 24.662 Atomic orbital electron populations 1.24972 0.95642 0.97171 0.97474 1.19302 0.91054 1.02479 1.02320 1.16796 0.88214 0.92711 0.91628 1.22004 0.94427 1.00705 1.00113 1.22489 0.94374 0.95367 0.96061 1.21138 0.94846 1.02047 0.99559 1.17588 0.85686 0.78180 0.82489 1.90840 1.71792 1.46264 1.31581 1.49099 1.08605 1.65221 1.11813 1.22508 0.97216 0.99673 0.82803 1.22188 0.94379 1.01438 0.94804 0.89460 1.21303 0.97989 0.99717 0.94766 1.21541 0.94429 1.01041 0.98295 1.21980 0.96530 1.01454 0.97830 1.19530 0.85390 0.97036 0.89536 0.93348 1.42398 1.08831 1.36743 1.48298 1.19249 0.89381 1.08890 1.19504 0.91164 1.24735 0.98279 0.98447 0.99361 1.69662 1.30410 1.28515 1.29293 0.86155 0.83917 0.79100 0.77234 1.20589 1.21857 1.21949 1.22160 0.96408 1.00712 0.92894 0.90255 1.21671 0.77143 1.02598 0.98035 1.22995 0.87830 0.93793 0.94861 1.67875 1.09674 1.18812 1.21717 0.75254 0.83649 0.82129 0.90568 0.90160 0.91536 0.92018 0.92594 0.92528 0.92709 0.91821 0.78207 0.93546 0.90374 0.90537 0.80736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 19.25 29.55 0.57 -0.31 16 2 C -0.15 -1.43 13.43 -38.83 -0.52 -1.96 16 3 C 0.24 2.58 6.59 -84.91 -0.56 2.02 16 4 C -0.15 -1.27 9.77 -39.13 -0.38 -1.65 16 5 C -0.06 -0.51 8.23 -38.93 -0.32 -0.83 16 6 C -0.17 -2.01 5.80 -104.76 -0.61 -2.62 16 7 C 0.57 8.44 7.72 -12.40 -0.10 8.34 16 8 O -0.53 -9.83 16.85 5.30 0.09 -9.74 16 9 N -0.61 -8.25 3.38 -171.89 -0.58 -8.83 16 10 C 0.10 0.95 4.58 -2.69 -0.01 0.94 16 11 C -0.11 -1.18 2.47 -89.77 -0.22 -1.40 16 12 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 13 C -0.10 -0.95 5.75 -27.01 -0.16 -1.10 16 14 C -0.11 -1.33 5.84 -26.55 -0.15 -1.49 16 15 C -0.14 -2.17 5.40 -27.55 -0.15 -2.32 16 16 C 0.20 3.49 2.40 -69.30 -0.17 3.33 16 17 H 0.05 0.91 7.99 -51.93 -0.41 0.50 16 18 N -0.72 -16.97 5.05 -54.76 -0.28 -17.25 16 19 C -0.24 -6.39 9.95 -15.06 -0.15 -6.54 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 23 Si 0.90 22.23 29.55 -169.99 -5.02 17.20 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 C -0.10 -1.48 1.84 -90.35 -0.17 -1.64 16 28 H 0.08 1.15 7.97 -51.93 -0.41 0.74 16 29 C 0.13 2.03 6.52 -3.42 -0.02 2.01 16 30 C 0.16 2.00 10.75 -17.17 -0.18 1.81 16 31 N -0.47 -5.86 10.27 -10.78 -0.11 -5.97 16 32 H 0.23 0.50 7.80 -54.09 -0.42 0.08 16 33 H 0.15 0.79 8.06 -52.48 -0.42 0.36 16 34 H 0.16 1.09 4.13 -52.49 -0.22 0.87 16 35 H 0.08 0.58 7.05 -51.93 -0.37 0.22 16 36 H 0.08 0.62 6.53 -51.93 -0.34 0.28 16 37 H 0.07 0.61 8.00 -51.93 -0.42 0.20 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.38 9.71 7.81 -40.82 -0.32 9.39 16 44 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.08 1.44 8.08 -51.93 -0.42 1.02 16 46 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 47 H 0.18 2.02 7.75 -52.49 -0.41 1.61 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -33.24 385.45 -9.42 -42.66 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.66 Total: 6.91 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -3.40 Total: -3.85 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.24 Total: -59.00 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.24 -9.42 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992862133.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.462 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds