Wall clock time and date at job start Sat Apr 11 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39631 * 120.49250 * 339.64013 * 3 2 1 5 5 N 1.31752 * 120.88355 * 180.02562 * 4 3 2 6 6 C 1.31734 * 122.03812 * 359.97438 * 5 4 3 7 7 C 1.39589 * 120.88139 * 0.02562 * 6 5 4 8 8 C 1.47858 * 120.49531 * 179.97438 * 7 6 5 9 9 O 1.21554 * 120.00268 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99840 * 359.97438 * 8 7 6 11 11 C 1.46498 * 119.99760 * 179.97438 * 10 8 7 12 12 C 1.53003 * 115.54751 * 179.97438 * 11 10 8 13 13 C 1.53036 * 109.45910 * 34.32981 * 12 11 10 14 14 C 1.53189 * 109.31589 * 178.61253 * 13 12 11 15 15 N 1.46927 * 108.77499 * 54.63666 * 14 13 12 16 16 C 1.36932 * 120.63177 * 126.41632 * 15 14 13 17 17 H 1.08004 * 120.00038 * 207.66728 * 16 15 14 18 18 C 1.38814 * 119.99982 * 27.66313 * 16 15 14 19 19 N 1.31612 * 120.00200 * 17.37133 * 18 16 15 20 20 Si 1.86798 * 119.99944 * 197.36766 * 18 16 15 21 21 H 1.48503 * 109.47280 * 59.99851 * 20 18 16 22 22 H 1.48501 * 109.47190 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47276 * 300.00228 * 20 18 16 24 24 C 1.46931 * 118.73618 * 306.39418 * 15 14 13 25 25 C 1.53039 * 109.46243 * 274.26340 * 12 11 10 26 26 C 1.52994 * 117.52228 * 325.70272 * 11 10 8 27 27 C 1.52997 * 60.00254 * 107.47946 * 26 11 10 28 28 C 1.39679 * 120.48928 * 159.92089 * 3 2 1 29 29 H 4.52727 * 13.93131 * 359.97438 * 4 2 1 30 30 H 1.08004 * 119.55945 * 0.02562 * 4 3 2 31 31 H 1.08007 * 119.56031 * 180.02562 * 6 5 4 32 32 H 0.97001 * 119.99847 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.44702 * 154.29580 * 12 11 10 34 34 H 1.09004 * 109.50401 * 298.56806 * 13 12 11 35 35 H 1.09006 * 109.49890 * 58.66605 * 13 12 11 36 36 H 1.08996 * 109.59205 * 174.42339 * 14 13 12 37 37 H 1.09002 * 109.58857 * 294.85472 * 14 13 12 38 38 H 0.96996 * 120.00390 * 179.97438 * 19 18 16 39 39 H 1.09001 * 109.58954 * 293.81785 * 24 15 14 40 40 H 1.08999 * 109.58319 * 173.39833 * 24 15 14 41 41 H 1.08998 * 109.49975 * 301.34028 * 25 12 11 42 42 H 1.09001 * 109.49731 * 61.39982 * 25 12 11 43 43 H 1.09004 * 117.49872 * 214.97284 * 26 11 10 44 44 H 1.09000 * 117.50026 * 359.97438 * 26 11 10 45 45 H 1.08994 * 117.50162 * 252.50857 * 27 26 11 46 46 H 1.09010 * 117.51709 * 107.47924 * 27 26 11 47 47 H 1.08010 * 120.91712 * 359.97103 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3150 -1.1271 0.4186 5 7 4.6325 -1.1347 0.4222 6 6 5.3385 -0.0920 0.0354 7 6 4.7110 1.0770 -0.3985 8 6 5.5118 2.2426 -0.8303 9 8 4.9560 3.2562 -1.2060 10 7 6.8580 2.1814 -0.8062 11 6 7.6513 3.3361 -1.2346 12 6 9.1692 3.1560 -1.1655 13 6 9.5257 1.7043 -1.4933 14 6 11.0479 1.5358 -1.4572 15 7 11.5442 1.9996 -0.1544 16 6 12.3286 1.1891 0.6221 17 1 12.3269 1.3040 1.6961 18 6 13.1258 0.2198 0.0291 19 7 13.3999 0.2892 -1.2563 20 14 13.8096 -1.1832 1.0554 21 1 12.6881 -1.9549 1.6488 22 1 14.6239 -2.0765 0.1927 23 1 14.6609 -0.6333 2.1409 24 6 11.1833 3.3498 0.2992 25 6 9.6596 3.4978 0.2433 26 6 7.0926 4.1957 -2.3702 27 6 7.0911 4.7282 -0.9359 28 6 3.3142 1.1314 -0.4132 29 1 -1.0500 -0.0009 0.0009 30 1 2.7763 -2.0048 0.7438 31 1 6.4172 -0.1422 0.0542 32 1 7.3014 1.3729 -0.5053 33 1 9.6465 3.8190 -1.8871 34 1 9.0689 1.0423 -0.7576 35 1 9.1556 1.4544 -2.4877 36 1 11.3026 0.4847 -1.5921 37 1 11.5001 2.1285 -2.2524 38 1 13.9573 -0.3879 -1.6706 39 1 11.6465 4.0903 -0.3528 40 1 11.5274 3.4953 1.3231 41 1 9.3847 4.5244 0.4851 42 1 9.2011 2.8194 0.9628 43 1 7.8064 4.6327 -3.0686 44 1 6.1346 3.9020 -2.7993 45 1 6.1321 4.7849 -0.4211 46 1 7.8039 5.5155 -0.6902 47 1 2.7969 2.0218 -0.7393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000255448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:42 Heat of formation + Delta-G solvation = 107.876292 kcal Electronic energy + Delta-G solvation = -28953.288887 eV Core-core repulsion = 25104.198983 eV Total energy + Delta-G solvation = -3849.089904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12747 -39.97831 -37.99753 -36.03361 -34.83060 -33.52668 -32.80511 -32.24346 -30.79591 -30.44592 -29.66376 -25.74492 -25.12049 -24.41582 -22.91011 -22.56500 -21.83651 -21.43927 -19.95975 -19.46526 -18.93639 -17.86162 -17.17704 -16.96825 -16.60985 -15.55325 -15.31756 -15.23792 -14.86654 -14.50978 -14.15990 -14.01053 -13.72731 -13.59896 -13.54982 -13.37355 -13.05150 -12.90654 -12.73067 -12.33518 -12.06931 -11.54617 -11.25813 -11.23861 -11.15012 -11.07723 -10.76279 -10.72671 -10.45892 -10.30735 -10.29537 -10.15122 -10.12630 -9.91376 -9.69167 -9.57067 -9.36403 -9.23871 -8.56053 -8.45579 -6.69513 -5.80736 -3.22606 0.11346 0.54957 2.23152 2.34668 2.85568 2.90155 3.37409 3.43641 3.44664 3.58224 3.67632 3.94910 4.07819 4.35249 4.41459 4.45100 4.48494 4.73613 4.80859 4.96175 5.09595 5.16713 5.32649 5.37997 5.43170 5.57258 5.58173 5.64129 5.65769 5.71360 5.86659 5.93926 6.06309 6.07832 6.12870 6.28154 6.42907 6.46578 6.50299 6.54295 6.66673 6.70216 6.79465 6.97141 7.02678 7.30927 7.38138 7.42537 7.61962 7.77803 8.02367 8.43177 9.19724 9.83280 10.39835 11.27761 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.002937 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.144976 B = 9532.491196 C =11302.110625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.152 4.152 3 C -0.049 4.049 4 C 0.147 3.853 5 N -0.478 5.478 6 C 0.145 3.855 7 C -0.181 4.181 8 C 0.562 3.438 9 O -0.531 6.531 10 N -0.680 5.680 11 C 0.107 3.893 12 C -0.042 4.042 13 C -0.135 4.135 14 C 0.171 3.829 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.144 3.856 25 C -0.125 4.125 26 C -0.178 4.178 27 C -0.176 4.176 28 C 0.005 3.995 29 H 0.228 0.772 30 H 0.166 0.834 31 H 0.165 0.835 32 H 0.407 0.593 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.019 0.981 38 H 0.254 0.746 39 H 0.017 0.983 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.094 0.906 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.672 1.846 0.425 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.153 4.153 3 C -0.052 4.052 4 C -0.011 4.011 5 N -0.185 5.185 6 C -0.013 4.013 7 C -0.187 4.187 8 C 0.348 3.652 9 O -0.410 6.410 10 N -0.330 5.330 11 C 0.020 3.980 12 C -0.061 4.061 13 C -0.174 4.174 14 C 0.045 3.955 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.018 3.982 25 C -0.164 4.164 26 C -0.216 4.216 27 C -0.214 4.214 28 C -0.021 4.021 29 H 0.244 0.756 30 H 0.183 0.817 31 H 0.182 0.818 32 H 0.246 0.754 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.112 0.888 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.438 1.682 0.353 21.507 hybrid contribution -0.067 -0.417 0.322 0.531 sum -21.505 1.265 0.675 21.553 Atomic orbital electron populations 1.24938 0.95718 0.98222 0.98574 1.19569 0.91436 1.02284 1.01999 1.16851 0.88219 0.95814 1.04271 1.23200 0.89693 0.96467 0.91746 1.67767 1.07528 1.28399 1.14814 1.23215 1.00808 0.87155 0.90127 1.20974 0.94726 0.96692 1.06264 1.17939 0.82150 0.86821 0.78254 1.90740 1.71572 1.31310 1.47343 1.45351 1.04886 1.17435 1.65312 1.20989 0.91354 0.83013 1.02612 1.20792 0.87560 0.99084 0.98672 1.22227 1.01716 0.94034 0.99439 1.20771 0.86658 1.01397 0.86657 1.44056 1.57389 1.10521 1.19503 1.19136 1.17618 1.11923 0.89552 0.91760 1.25024 0.97406 1.01064 0.96122 1.70013 1.39364 1.34917 1.10429 0.86393 0.78632 0.82454 0.79437 1.20992 1.21664 1.20929 1.20915 0.91251 0.88032 0.98024 1.22066 0.99120 0.99860 0.95381 1.23434 1.03220 1.02960 0.91967 1.23352 1.03097 0.95788 0.99136 1.21782 0.92320 0.97416 0.90568 0.75566 0.81660 0.81751 0.75435 0.90135 0.93121 0.92904 0.89301 0.96318 0.93573 0.96494 0.92786 0.92871 0.92415 0.88863 0.87727 0.87711 0.88782 0.83040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 19.25 29.55 0.57 -0.48 16 2 C -0.15 -1.36 13.27 -38.84 -0.52 -1.88 16 3 C -0.05 -0.49 5.73 -106.91 -0.61 -1.10 16 4 C 0.15 1.40 10.90 -17.07 -0.19 1.21 16 5 N -0.48 -5.38 10.33 -12.60 -0.13 -5.51 16 6 C 0.14 1.57 10.70 -17.09 -0.18 1.39 16 7 C -0.18 -2.06 5.88 -104.87 -0.62 -2.68 16 8 C 0.56 7.34 7.48 -12.32 -0.09 7.25 16 9 O -0.53 -8.03 11.89 5.32 0.06 -7.97 16 10 N -0.68 -8.71 5.34 -48.54 -0.26 -8.97 16 11 C 0.11 1.48 2.49 -131.82 -0.33 1.15 16 12 C -0.04 -0.64 2.28 -90.58 -0.21 -0.85 16 13 C -0.13 -2.31 4.83 -26.61 -0.13 -2.43 16 14 C 0.17 3.83 5.31 -3.71 -0.02 3.81 16 15 N -0.59 -14.09 3.00 -172.32 -0.52 -14.61 16 16 C -0.25 -6.70 9.59 -15.06 -0.14 -6.85 16 17 H 0.06 1.68 7.89 -52.48 -0.41 1.27 16 18 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 19 N -0.90 -25.55 11.19 55.49 0.62 -24.93 16 20 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.14 2.87 6.52 -3.71 -0.02 2.85 16 25 C -0.13 -2.02 5.22 -26.61 -0.14 -2.16 16 26 C -0.18 -2.40 9.36 -26.74 -0.25 -2.65 16 27 C -0.18 -2.36 8.90 -26.73 -0.24 -2.60 16 28 C 0.01 0.06 9.44 -38.46 -0.36 -0.31 16 29 H 0.23 0.60 7.80 -54.09 -0.42 0.18 16 30 H 0.17 1.14 8.06 -52.48 -0.42 0.71 16 31 H 0.17 1.56 6.41 -52.48 -0.34 1.22 16 32 H 0.41 4.84 4.71 -40.82 -0.19 4.64 16 33 H 0.08 1.26 7.90 -51.93 -0.41 0.85 16 34 H 0.05 0.84 6.50 -51.93 -0.34 0.50 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 2.25 6.04 -51.93 -0.31 1.94 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 41 H 0.05 0.76 7.24 -51.93 -0.38 0.39 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.09 1.16 8.05 -51.93 -0.42 0.75 16 44 H 0.10 1.53 6.38 -51.93 -0.33 1.20 16 45 H 0.10 1.53 6.37 -51.93 -0.33 1.20 16 46 H 0.09 1.17 7.59 -51.92 -0.39 0.78 16 47 H 0.15 1.56 7.73 -52.48 -0.41 1.15 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -30.91 382.18 -9.40 -40.30 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.34 Total: 6.05 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.56 Total: -6.34 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.28 Total: -54.01 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.06 Total: -7.97 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.91 -9.40 -40.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000255448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.179 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds