Wall clock time and date at job start Sat Apr 11 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39631 * 120.49250 * 339.64013 * 3 2 1 5 5 N 1.31752 * 120.88355 * 180.02562 * 4 3 2 6 6 C 1.31734 * 122.03812 * 359.97438 * 5 4 3 7 7 C 1.39589 * 120.88139 * 0.02562 * 6 5 4 8 8 C 1.47858 * 120.49531 * 179.97438 * 7 6 5 9 9 O 1.21554 * 120.00268 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99840 * 359.97438 * 8 7 6 11 11 C 1.46498 * 119.99760 * 179.97438 * 10 8 7 12 12 C 1.53003 * 115.54751 * 179.97438 * 11 10 8 13 13 C 1.53036 * 109.45910 * 34.32981 * 12 11 10 14 14 C 1.53189 * 109.31589 * 178.61253 * 13 12 11 15 15 N 1.46927 * 108.77499 * 54.63666 * 14 13 12 16 16 C 1.36932 * 120.63177 * 126.41632 * 15 14 13 17 17 H 1.08004 * 120.00038 * 207.66728 * 16 15 14 18 18 C 1.38814 * 119.99982 * 27.66313 * 16 15 14 19 19 N 1.31612 * 120.00200 * 17.37133 * 18 16 15 20 20 Si 1.86798 * 119.99944 * 197.36766 * 18 16 15 21 21 H 1.48503 * 109.47280 * 59.99851 * 20 18 16 22 22 H 1.48501 * 109.47190 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47276 * 300.00228 * 20 18 16 24 24 C 1.46931 * 118.73618 * 306.39418 * 15 14 13 25 25 C 1.53039 * 109.46243 * 274.26340 * 12 11 10 26 26 C 1.52994 * 117.52228 * 325.70272 * 11 10 8 27 27 C 1.52997 * 60.00254 * 107.47946 * 26 11 10 28 28 C 1.39679 * 120.48928 * 159.92089 * 3 2 1 29 29 H 4.52727 * 13.93131 * 359.97438 * 4 2 1 30 30 H 1.08004 * 119.55945 * 0.02562 * 4 3 2 31 31 H 1.08007 * 119.56031 * 180.02562 * 6 5 4 32 32 H 0.97001 * 119.99847 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.44702 * 154.29580 * 12 11 10 34 34 H 1.09004 * 109.50401 * 298.56806 * 13 12 11 35 35 H 1.09006 * 109.49890 * 58.66605 * 13 12 11 36 36 H 1.08996 * 109.59205 * 174.42339 * 14 13 12 37 37 H 1.09002 * 109.58857 * 294.85472 * 14 13 12 38 38 H 0.96996 * 120.00390 * 179.97438 * 19 18 16 39 39 H 1.09001 * 109.58954 * 293.81785 * 24 15 14 40 40 H 1.08999 * 109.58319 * 173.39833 * 24 15 14 41 41 H 1.08998 * 109.49975 * 301.34028 * 25 12 11 42 42 H 1.09001 * 109.49731 * 61.39982 * 25 12 11 43 43 H 1.09004 * 117.49872 * 214.97284 * 26 11 10 44 44 H 1.09000 * 117.50026 * 359.97438 * 26 11 10 45 45 H 1.08994 * 117.50162 * 252.50857 * 27 26 11 46 46 H 1.09010 * 117.51709 * 107.47924 * 27 26 11 47 47 H 1.08010 * 120.91712 * 359.97103 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3150 -1.1271 0.4186 5 7 4.6325 -1.1347 0.4222 6 6 5.3385 -0.0920 0.0354 7 6 4.7110 1.0770 -0.3985 8 6 5.5118 2.2426 -0.8303 9 8 4.9560 3.2562 -1.2060 10 7 6.8580 2.1814 -0.8062 11 6 7.6513 3.3361 -1.2346 12 6 9.1692 3.1560 -1.1655 13 6 9.5257 1.7043 -1.4933 14 6 11.0479 1.5358 -1.4572 15 7 11.5442 1.9996 -0.1544 16 6 12.3286 1.1891 0.6221 17 1 12.3269 1.3040 1.6961 18 6 13.1258 0.2198 0.0291 19 7 13.3999 0.2892 -1.2563 20 14 13.8096 -1.1832 1.0554 21 1 12.6881 -1.9549 1.6488 22 1 14.6239 -2.0765 0.1927 23 1 14.6609 -0.6333 2.1409 24 6 11.1833 3.3498 0.2992 25 6 9.6596 3.4978 0.2433 26 6 7.0926 4.1957 -2.3702 27 6 7.0911 4.7282 -0.9359 28 6 3.3142 1.1314 -0.4132 29 1 -1.0500 -0.0009 0.0009 30 1 2.7763 -2.0048 0.7438 31 1 6.4172 -0.1422 0.0542 32 1 7.3014 1.3729 -0.5053 33 1 9.6465 3.8190 -1.8871 34 1 9.0689 1.0423 -0.7576 35 1 9.1556 1.4544 -2.4877 36 1 11.3026 0.4847 -1.5921 37 1 11.5001 2.1285 -2.2524 38 1 13.9573 -0.3879 -1.6706 39 1 11.6465 4.0903 -0.3528 40 1 11.5274 3.4953 1.3231 41 1 9.3847 4.5244 0.4851 42 1 9.2011 2.8194 0.9628 43 1 7.8064 4.6327 -3.0686 44 1 6.1346 3.9020 -2.7993 45 1 6.1321 4.7849 -0.4211 46 1 7.8039 5.5155 -0.6902 47 1 2.7969 2.0218 -0.7393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000255448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:42 Heat of formation + Delta-G solvation = 90.894571 kcal Electronic energy + Delta-G solvation = -28954.025270 eV Core-core repulsion = 25104.198983 eV Total energy + Delta-G solvation = -3849.826287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.06818 -40.93446 -39.32460 -37.44107 -35.51308 -34.56090 -34.50517 -33.07776 -32.17328 -31.49150 -31.30085 -27.42409 -26.08237 -25.24512 -24.36208 -23.99998 -23.00878 -22.54549 -21.31180 -20.36353 -20.21784 -18.77830 -18.57685 -17.98261 -17.59364 -16.80914 -16.45526 -16.26863 -16.20470 -15.70551 -15.30853 -15.25058 -15.04832 -14.95622 -14.75849 -14.56706 -14.34100 -14.24868 -13.90875 -13.63363 -13.12817 -12.92904 -12.72860 -12.61000 -12.51843 -12.36169 -12.17723 -12.00485 -11.88176 -11.84126 -11.76789 -11.48848 -11.30776 -11.11423 -10.96169 -10.86055 -10.52923 -10.48515 -9.95757 -9.60735 -8.63969 -7.84055 -5.28052 -0.66326 -0.24260 1.49354 1.51205 1.51276 1.57765 1.62623 1.93546 2.07708 2.54217 2.80960 2.99640 3.02187 3.23523 3.29907 3.53796 3.60023 3.60643 3.65714 3.74991 3.84910 4.02776 4.05653 4.19411 4.30824 4.35492 4.50422 4.54762 4.69142 4.74244 4.77278 4.81600 4.83987 4.95918 4.99671 5.03206 5.05978 5.20298 5.26316 5.28543 5.35320 5.37362 5.40633 5.51792 5.59411 5.69041 5.81012 6.37143 6.42998 6.47326 6.64860 7.01587 7.19327 7.91413 8.42181 9.21875 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.002937 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.144976 B = 9532.491196 C =11302.110625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.208 4.208 3 C -0.045 4.045 4 C 0.146 3.854 5 N -0.496 5.496 6 C 0.141 3.859 7 C -0.188 4.188 8 C 0.565 3.435 9 O -0.554 6.554 10 N -0.678 5.678 11 C 0.106 3.894 12 C -0.032 4.032 13 C -0.120 4.120 14 C 0.177 3.823 15 N -0.609 5.609 16 C -0.259 4.259 17 H 0.065 0.935 18 C -0.049 4.049 19 N -0.934 5.934 20 Si 0.962 3.038 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.278 1.278 24 C 0.140 3.860 25 C -0.112 4.112 26 C -0.174 4.174 27 C -0.168 4.168 28 C -0.002 4.002 29 H 0.265 0.735 30 H 0.191 0.809 31 H 0.174 0.826 32 H 0.411 0.589 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.055 0.945 37 H -0.005 1.005 38 H 0.249 0.751 39 H 0.014 0.986 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.108 0.892 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.045 1.852 1.286 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.209 4.209 3 C -0.047 4.047 4 C -0.011 4.011 5 N -0.203 5.203 6 C -0.017 4.017 7 C -0.193 4.193 8 C 0.352 3.648 9 O -0.434 6.434 10 N -0.328 5.328 11 C 0.019 3.981 12 C -0.051 4.051 13 C -0.160 4.160 14 C 0.051 3.949 15 N -0.333 5.333 16 C -0.390 4.390 17 H 0.083 0.917 18 C -0.245 4.245 19 N -0.580 5.580 20 Si 0.791 3.209 21 H -0.203 1.203 22 H -0.223 1.223 23 H -0.204 1.204 24 C 0.014 3.986 25 C -0.151 4.151 26 C -0.212 4.212 27 C -0.206 4.206 28 C -0.029 4.029 29 H 0.281 0.719 30 H 0.208 0.792 31 H 0.191 0.809 32 H 0.251 0.749 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.014 0.986 38 H 0.058 0.942 39 H 0.032 0.968 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.124 0.876 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.127 0.873 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -23.828 1.701 1.233 23.921 hybrid contribution 0.558 -0.383 0.063 0.680 sum -23.271 1.318 1.296 23.344 Atomic orbital electron populations 1.25885 0.96422 0.95501 0.95547 1.19779 0.91805 1.04801 1.04506 1.16943 0.89139 0.95332 1.03272 1.23620 0.89284 0.97244 0.90931 1.67802 1.08441 1.28603 1.15484 1.23329 1.01294 0.86970 0.90109 1.20820 0.94849 0.96315 1.07342 1.18118 0.82092 0.86935 0.77647 1.90726 1.71940 1.32279 1.48451 1.45304 1.04899 1.17348 1.65238 1.20780 0.90245 0.83677 1.03395 1.20628 0.88758 0.97547 0.98154 1.22003 0.97556 0.95778 1.00615 1.20580 0.89955 0.98767 0.85583 1.44316 1.57390 1.11973 1.19574 1.19450 1.17293 1.12215 0.89992 0.91726 1.25722 0.98337 1.03317 0.97114 1.70166 1.40460 1.35515 1.11895 0.85424 0.77975 0.79632 0.77919 1.20298 1.22276 1.20410 1.21068 0.93905 0.85993 0.97608 1.21906 0.95907 1.01421 0.95823 1.23427 1.02892 1.02722 0.92202 1.23340 1.02807 0.95607 0.98859 1.21859 0.92193 0.97896 0.90906 0.71874 0.79225 0.80898 0.74946 0.90050 0.92400 0.91540 0.92696 0.98645 0.94196 0.96778 0.92970 0.90257 0.92638 0.87635 0.88860 0.88775 0.87332 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 19.25 74.32 1.43 0.22 16 2 C -0.21 -3.37 13.27 30.01 0.40 -2.98 16 3 C -0.04 -0.84 5.73 -21.35 -0.12 -0.97 16 4 C 0.15 2.64 10.90 85.04 0.93 3.57 16 5 N -0.50 -10.78 10.33 -193.76 -2.00 -12.78 16 6 C 0.14 2.98 10.70 85.03 0.91 3.89 16 7 C -0.19 -4.20 5.88 -20.03 -0.12 -4.32 16 8 C 0.56 14.41 7.48 86.79 0.65 15.06 16 9 O -0.55 -16.49 11.89 -3.89 -0.05 -16.54 16 10 N -0.68 -16.58 5.34 -425.75 -2.27 -18.85 16 11 C 0.11 2.74 2.49 3.60 0.01 2.75 16 12 C -0.03 -0.92 2.28 -10.77 -0.02 -0.95 16 13 C -0.12 -4.03 4.83 30.67 0.15 -3.88 16 14 C 0.18 8.07 5.31 86.36 0.46 8.53 16 15 N -0.61 -29.22 3.00 -699.10 -2.09 -31.31 16 16 C -0.26 -13.86 9.59 84.03 0.81 -13.06 16 17 H 0.07 3.38 7.89 -2.91 -0.02 3.36 16 18 C -0.05 -2.71 4.91 84.86 0.42 -2.30 16 19 N -0.93 -54.32 11.19 21.65 0.24 -54.08 16 20 Si 0.96 44.18 29.59 68.60 2.03 46.21 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 C 0.14 5.47 6.52 86.36 0.56 6.03 16 25 C -0.11 -3.40 5.22 30.67 0.16 -3.24 16 26 C -0.17 -4.42 9.36 30.59 0.29 -4.13 16 27 C -0.17 -4.18 8.90 30.59 0.27 -3.91 16 28 C 0.00 -0.05 9.44 22.99 0.22 0.17 16 29 H 0.27 0.21 7.80 -4.42 -0.03 0.18 16 30 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.17 3.17 6.41 -2.91 -0.02 3.16 16 32 H 0.41 9.29 4.71 -92.71 -0.44 8.86 16 33 H 0.08 2.40 7.90 -2.39 -0.02 2.38 16 34 H 0.06 1.86 6.50 -2.38 -0.02 1.85 16 35 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.05 2.88 6.04 -2.39 -0.01 2.86 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 39 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 41 H 0.08 2.04 7.24 -2.39 -0.02 2.02 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.11 2.41 8.05 -2.39 -0.02 2.39 16 44 H 0.09 2.63 6.38 -2.39 -0.02 2.62 16 45 H 0.09 2.61 6.37 -2.39 -0.02 2.60 16 46 H 0.11 2.38 7.59 -2.38 -0.02 2.36 16 47 H 0.15 3.11 7.73 -2.91 -0.02 3.08 16 Total: -1.00 -67.67 382.18 3.81 -63.87 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.56 Total: 23.00 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 7.39 Total: 0.49 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -6.13 Total: -117.02 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.05 Total: -16.54 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -67.67 3.81 -63.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000255448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.764 kcal (2) G-P(sol) polarization free energy of solvation -67.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds