Wall clock time and date at job start Sat Apr 11 2020 05:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39633 * 120.48746 * 119.34981 * 3 2 1 5 5 N 1.31763 * 120.88163 * 180.02562 * 4 3 2 6 6 C 1.31734 * 122.03691 * 359.72546 * 5 4 3 7 7 C 1.39602 * 120.87793 * 0.53928 * 6 5 4 8 8 C 1.47859 * 120.49277 * 179.74938 * 7 6 5 9 9 O 1.21546 * 120.00118 * 218.82405 * 8 7 6 10 10 N 1.34777 * 119.99536 * 39.10057 * 8 7 6 11 11 C 1.47069 * 120.84929 * 5.56237 * 10 8 7 12 12 C 1.53594 * 108.79891 * 126.52332 * 11 10 8 13 13 C 1.53147 * 109.53753 * 54.23953 * 12 11 10 14 14 C 1.52815 * 109.26949 * 299.01785 * 13 12 11 15 15 H 1.09008 * 109.46394 * 302.00734 * 14 13 12 16 16 C 1.53024 * 110.51977 * 181.59549 * 14 13 12 17 17 N 1.47072 * 108.50312 * 184.77102 * 16 14 13 18 18 C 1.36944 * 120.47249 * 233.21440 * 17 16 14 19 19 H 1.07996 * 119.99815 * 148.58657 * 18 17 16 20 20 C 1.38807 * 119.99964 * 328.59021 * 18 17 16 21 21 N 1.31632 * 119.99965 * 349.29070 * 20 18 17 22 22 Si 1.86803 * 120.00499 * 169.29044 * 20 18 17 23 23 H 1.48493 * 109.46990 * 89.99647 * 22 20 18 24 24 H 1.48496 * 109.47430 * 210.00028 * 22 20 18 25 25 H 1.48501 * 109.46590 * 329.99968 * 22 20 18 26 26 C 1.46864 * 119.05681 * 53.19303 * 17 16 14 27 27 C 1.53313 * 109.10058 * 307.34227 * 26 17 16 28 28 C 1.46718 * 120.84232 * 185.83927 * 10 8 7 29 29 H 1.09001 * 109.53009 * 114.79347 * 28 10 8 30 30 C 1.39678 * 120.48819 * 299.37361 * 3 2 1 31 31 H 4.52724 * 13.92940 * 0.02562 * 4 2 1 32 32 H 1.08000 * 119.56248 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.56329 * 180.29659 * 6 5 4 34 34 H 1.08997 * 109.53825 * 246.44885 * 11 10 8 35 35 H 1.09003 * 109.54017 * 6.70310 * 11 10 8 36 36 H 1.09000 * 109.59441 * 294.15886 * 12 11 10 37 37 H 1.08992 * 109.35241 * 174.17814 * 12 11 10 38 38 H 1.09003 * 109.50505 * 179.07801 * 13 12 11 39 39 H 1.09000 * 109.50705 * 58.95787 * 13 12 11 40 40 H 1.08994 * 109.71578 * 64.94540 * 16 14 13 41 41 H 1.09000 * 109.53761 * 304.48541 * 16 14 13 42 42 H 0.96997 * 120.00008 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.53053 * 187.46215 * 26 17 16 44 44 H 1.08992 * 109.53653 * 67.23024 * 26 17 16 45 45 H 1.09001 * 109.55721 * 294.26260 * 27 26 17 46 46 H 1.09000 * 109.64241 * 174.00250 * 27 26 17 47 47 H 1.07996 * 120.92348 * 359.95153 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3142 0.5907 -1.0488 5 7 4.6318 0.5953 -1.0570 6 6 5.3385 0.0549 -0.0854 7 6 4.7117 -0.5614 0.9991 8 6 5.5134 -1.1702 2.0822 9 8 5.1565 -2.2161 2.5881 10 7 6.6368 -0.5624 2.5122 11 6 7.0182 0.7641 2.0044 12 6 7.2491 1.7033 3.1976 13 6 8.2664 1.0749 4.1546 14 6 7.7165 -0.2529 4.6742 15 1 6.7616 -0.0811 5.1710 16 6 8.6947 -0.8875 5.6652 17 7 8.1788 -2.2105 6.0480 18 6 8.0215 -2.5393 7.3680 19 1 7.2334 -3.2149 7.6659 20 6 8.8748 -2.0040 8.3230 21 7 9.9569 -1.3546 7.9488 22 14 8.4876 -2.2052 10.1394 23 1 9.1109 -3.4554 10.6428 24 1 9.0278 -1.0447 10.8922 25 1 7.0162 -2.2753 10.3270 26 6 7.8344 -3.1739 4.9943 27 6 6.8796 -2.5069 3.9974 28 6 7.5136 -1.2099 3.4943 29 1 8.4768 -1.4299 3.0337 30 6 3.3150 -0.5894 1.0489 31 1 -1.0500 0.0002 0.0007 32 1 2.7748 1.0488 -1.8647 33 1 6.4171 0.0855 -0.1305 34 1 7.9341 0.6810 1.4193 35 1 6.2183 1.1584 1.3776 36 1 6.3080 1.8646 3.7233 37 1 7.6318 2.6580 2.8371 38 1 8.4421 1.7490 4.9929 39 1 9.2031 0.8989 3.6258 40 1 8.7821 -0.2573 6.5502 41 1 9.6716 -0.9965 5.1941 42 1 10.5534 -0.9809 8.6162 43 1 7.3484 -4.0422 5.4393 44 1 8.7408 -3.4875 4.4768 45 1 5.9340 -2.2832 4.4914 46 1 6.7020 -3.1767 3.1559 47 1 2.7984 -1.0541 1.8757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021669101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:53 Heat of formation + Delta-G solvation = 97.319350 kcal Electronic energy + Delta-G solvation = -29758.620717 eV Core-core repulsion = 25909.073029 eV Total energy + Delta-G solvation = -3849.547688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.19618 -39.85877 -37.67393 -35.93435 -34.72155 -33.19613 -32.87386 -32.18141 -30.95879 -30.12126 -29.11066 -25.80841 -25.58687 -24.49000 -23.96624 -22.58683 -22.26690 -20.88034 -19.78574 -19.41935 -18.60355 -17.36737 -17.16393 -16.72971 -16.52633 -15.77372 -15.15899 -15.01432 -14.82893 -14.49962 -14.22017 -14.05082 -13.84383 -13.52431 -13.43938 -13.20922 -12.90934 -12.70773 -12.40903 -12.19630 -12.17316 -11.97104 -11.57341 -11.20195 -11.04220 -10.98528 -10.86397 -10.76440 -10.65759 -10.29079 -10.20103 -10.09430 -9.97736 -9.93503 -9.74723 -9.47092 -9.13054 -8.92983 -8.45161 -8.30499 -6.55962 -5.76084 -3.22898 0.20327 0.63685 2.27859 2.44651 2.80707 3.03098 3.38597 3.45038 3.47738 3.57931 3.73200 4.01270 4.31489 4.41346 4.47603 4.51041 4.77259 4.88368 4.97744 5.05104 5.12683 5.31784 5.40697 5.44385 5.46108 5.50134 5.62635 5.65211 5.69418 5.71601 5.87902 5.95048 6.09685 6.13716 6.24535 6.30099 6.38852 6.44276 6.56922 6.65149 6.79520 6.94498 6.98908 7.07245 7.20123 7.35426 7.42391 7.52285 7.68456 7.82529 8.20690 8.51198 9.25468 9.87198 10.44851 11.31968 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018164 B = 0.002868 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.102181 B = 9760.374983 C =10384.440869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.153 4.153 3 C -0.045 4.045 4 C 0.139 3.861 5 N -0.482 5.482 6 C 0.135 3.865 7 C -0.172 4.172 8 C 0.558 3.442 9 O -0.516 6.516 10 N -0.598 5.598 11 C 0.097 3.903 12 C -0.132 4.132 13 C -0.112 4.112 14 C -0.121 4.121 15 H 0.066 0.934 16 C 0.183 3.817 17 N -0.594 5.594 18 C -0.249 4.249 19 H 0.063 0.937 20 C 0.003 3.997 21 N -0.907 5.907 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.139 3.861 27 C -0.117 4.117 28 C 0.158 3.842 29 H 0.068 0.932 30 C -0.002 4.002 31 H 0.228 0.772 32 H 0.164 0.836 33 H 0.169 0.831 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.019 0.981 42 H 0.253 0.747 43 H 0.055 0.945 44 H 0.014 0.986 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.591 7.822 -18.299 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.153 4.153 3 C -0.047 4.047 4 C -0.019 4.019 5 N -0.189 5.189 6 C -0.022 4.022 7 C -0.178 4.178 8 C 0.345 3.655 9 O -0.393 6.393 10 N -0.330 5.330 11 C -0.026 4.026 12 C -0.170 4.170 13 C -0.150 4.150 14 C -0.142 4.142 15 H 0.084 0.916 16 C 0.057 3.943 17 N -0.316 5.316 18 C -0.379 4.379 19 H 0.081 0.919 20 C -0.195 4.195 21 N -0.552 5.552 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.012 3.988 27 C -0.156 4.156 28 C 0.057 3.943 29 H 0.086 0.914 30 C -0.028 4.028 31 H 0.244 0.756 32 H 0.182 0.818 33 H 0.186 0.814 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.032 0.968 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.175 7.701 -18.592 23.019 hybrid contribution -0.716 -0.316 1.624 1.803 sum -11.892 7.385 -16.968 21.997 Atomic orbital electron populations 1.24940 0.95729 0.98513 0.98272 1.19589 0.91472 1.02037 1.02238 1.16824 0.88157 1.02675 0.97069 1.23104 0.89706 0.93246 0.95820 1.67759 1.07559 1.17551 1.26020 1.23302 1.00883 0.90127 0.87931 1.21139 0.94770 1.03160 0.98694 1.18021 0.80694 0.84712 0.82114 1.90887 1.69047 1.22867 1.56494 1.48247 1.23171 1.18502 1.43071 1.22194 1.00744 0.82819 0.96858 1.21990 1.00636 0.97900 0.96494 1.21488 0.97712 0.97243 0.98565 1.22276 1.02006 0.93625 0.96313 0.91555 1.20758 0.91143 0.86739 0.95672 1.44062 1.76128 1.09838 1.01556 1.19193 1.09451 1.26666 0.82552 0.91899 1.25146 0.95091 1.00950 0.98346 1.69968 1.12371 1.40472 1.32351 0.86283 0.77899 0.77270 0.85257 1.21361 1.21619 1.20494 1.21132 0.95004 0.92722 0.89944 1.22472 0.99204 0.94678 0.99223 1.21409 0.91689 0.93789 0.87449 0.91373 1.21757 0.92274 0.92065 0.96730 0.75580 0.81840 0.81447 0.90864 0.89961 0.91728 0.91021 0.91454 0.91970 0.89087 0.96322 0.93673 0.92613 0.96795 0.91189 0.91055 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 19.25 29.55 0.57 -0.57 16 2 C -0.15 -1.44 13.27 -38.84 -0.52 -1.96 16 3 C -0.05 -0.46 5.73 -106.91 -0.61 -1.07 16 4 C 0.14 1.28 10.91 -17.06 -0.19 1.10 16 5 N -0.48 -4.98 10.33 -12.59 -0.13 -5.11 16 6 C 0.13 1.39 8.55 -17.08 -0.15 1.25 16 7 C -0.17 -2.08 5.18 -104.87 -0.54 -2.62 16 8 C 0.56 8.34 7.29 -12.32 -0.09 8.25 16 9 O -0.52 -9.42 12.47 5.33 0.07 -9.35 16 10 N -0.60 -8.51 2.96 -166.13 -0.49 -9.00 16 11 C 0.10 1.04 4.90 -3.42 -0.02 1.03 16 12 C -0.13 -1.52 6.08 -26.35 -0.16 -1.68 16 13 C -0.11 -1.63 5.25 -26.75 -0.14 -1.77 16 14 C -0.12 -2.23 2.21 -90.56 -0.20 -2.43 16 15 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 16 C 0.18 4.26 4.58 -3.72 -0.02 4.24 16 17 N -0.59 -15.04 3.00 -172.29 -0.52 -15.56 16 18 C -0.25 -6.92 9.56 -15.06 -0.14 -7.06 16 19 H 0.06 1.74 7.85 -52.49 -0.41 1.33 16 20 C 0.00 0.08 5.04 -17.43 -0.09 -0.01 16 21 N -0.91 -26.08 11.05 55.49 0.61 -25.46 16 22 Si 0.90 21.85 29.57 -169.99 -5.03 16.82 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 C 0.14 3.06 6.50 -3.68 -0.02 3.04 16 27 C -0.12 -2.27 3.80 -26.63 -0.10 -2.37 16 28 C 0.16 2.71 2.63 -67.73 -0.18 2.53 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 C 0.00 -0.03 9.51 -38.46 -0.37 -0.39 16 31 H 0.23 0.73 7.80 -54.09 -0.42 0.31 16 32 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.17 1.44 6.45 -52.49 -0.34 1.10 16 34 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 35 H 0.08 0.77 4.69 -51.93 -0.24 0.53 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.09 2.38 6.12 -51.93 -0.32 2.06 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 1.52 7.11 -51.93 -0.37 1.15 16 46 H 0.07 1.37 6.49 -51.93 -0.34 1.03 16 47 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -32.05 373.07 -9.46 -41.51 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.64 Total: 1.03 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.96 Total: -0.50 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.53 Total: -55.13 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.07 Total: -9.35 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.05 -9.46 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021669101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.825 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds