Wall clock time and date at job start Sat Apr 11 2020 05:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39633 * 120.48746 * 119.34981 * 3 2 1 5 5 N 1.31763 * 120.88163 * 180.02562 * 4 3 2 6 6 C 1.31734 * 122.03691 * 359.72546 * 5 4 3 7 7 C 1.39602 * 120.87793 * 0.53928 * 6 5 4 8 8 C 1.47859 * 120.49277 * 179.74938 * 7 6 5 9 9 O 1.21546 * 120.00118 * 218.82405 * 8 7 6 10 10 N 1.34777 * 119.99536 * 39.10057 * 8 7 6 11 11 C 1.47069 * 120.84929 * 5.56237 * 10 8 7 12 12 C 1.53594 * 108.79891 * 126.52332 * 11 10 8 13 13 C 1.53147 * 109.53753 * 54.23953 * 12 11 10 14 14 C 1.52815 * 109.26949 * 299.01785 * 13 12 11 15 15 H 1.09008 * 109.46394 * 302.00734 * 14 13 12 16 16 C 1.53024 * 110.51977 * 181.59549 * 14 13 12 17 17 N 1.47072 * 108.50312 * 184.77102 * 16 14 13 18 18 C 1.36944 * 120.47249 * 233.21440 * 17 16 14 19 19 H 1.07996 * 119.99815 * 148.58657 * 18 17 16 20 20 C 1.38807 * 119.99964 * 328.59021 * 18 17 16 21 21 N 1.31632 * 119.99965 * 349.29070 * 20 18 17 22 22 Si 1.86803 * 120.00499 * 169.29044 * 20 18 17 23 23 H 1.48493 * 109.46990 * 89.99647 * 22 20 18 24 24 H 1.48496 * 109.47430 * 210.00028 * 22 20 18 25 25 H 1.48501 * 109.46590 * 329.99968 * 22 20 18 26 26 C 1.46864 * 119.05681 * 53.19303 * 17 16 14 27 27 C 1.53313 * 109.10058 * 307.34227 * 26 17 16 28 28 C 1.46718 * 120.84232 * 185.83927 * 10 8 7 29 29 H 1.09001 * 109.53009 * 114.79347 * 28 10 8 30 30 C 1.39678 * 120.48819 * 299.37361 * 3 2 1 31 31 H 4.52724 * 13.92940 * 0.02562 * 4 2 1 32 32 H 1.08000 * 119.56248 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.56329 * 180.29659 * 6 5 4 34 34 H 1.08997 * 109.53825 * 246.44885 * 11 10 8 35 35 H 1.09003 * 109.54017 * 6.70310 * 11 10 8 36 36 H 1.09000 * 109.59441 * 294.15886 * 12 11 10 37 37 H 1.08992 * 109.35241 * 174.17814 * 12 11 10 38 38 H 1.09003 * 109.50505 * 179.07801 * 13 12 11 39 39 H 1.09000 * 109.50705 * 58.95787 * 13 12 11 40 40 H 1.08994 * 109.71578 * 64.94540 * 16 14 13 41 41 H 1.09000 * 109.53761 * 304.48541 * 16 14 13 42 42 H 0.96997 * 120.00008 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.53053 * 187.46215 * 26 17 16 44 44 H 1.08992 * 109.53653 * 67.23024 * 26 17 16 45 45 H 1.09001 * 109.55721 * 294.26260 * 27 26 17 46 46 H 1.09000 * 109.64241 * 174.00250 * 27 26 17 47 47 H 1.07996 * 120.92348 * 359.95153 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3142 0.5907 -1.0488 5 7 4.6318 0.5953 -1.0570 6 6 5.3385 0.0549 -0.0854 7 6 4.7117 -0.5614 0.9991 8 6 5.5134 -1.1702 2.0822 9 8 5.1565 -2.2161 2.5881 10 7 6.6368 -0.5624 2.5122 11 6 7.0182 0.7641 2.0044 12 6 7.2491 1.7033 3.1976 13 6 8.2664 1.0749 4.1546 14 6 7.7165 -0.2529 4.6742 15 1 6.7616 -0.0811 5.1710 16 6 8.6947 -0.8875 5.6652 17 7 8.1788 -2.2105 6.0480 18 6 8.0215 -2.5393 7.3680 19 1 7.2334 -3.2149 7.6659 20 6 8.8748 -2.0040 8.3230 21 7 9.9569 -1.3546 7.9488 22 14 8.4876 -2.2052 10.1394 23 1 9.1109 -3.4554 10.6428 24 1 9.0278 -1.0447 10.8922 25 1 7.0162 -2.2753 10.3270 26 6 7.8344 -3.1739 4.9943 27 6 6.8796 -2.5069 3.9974 28 6 7.5136 -1.2099 3.4943 29 1 8.4768 -1.4299 3.0337 30 6 3.3150 -0.5894 1.0489 31 1 -1.0500 0.0002 0.0007 32 1 2.7748 1.0488 -1.8647 33 1 6.4171 0.0855 -0.1305 34 1 7.9341 0.6810 1.4193 35 1 6.2183 1.1584 1.3776 36 1 6.3080 1.8646 3.7233 37 1 7.6318 2.6580 2.8371 38 1 8.4421 1.7490 4.9929 39 1 9.2031 0.8989 3.6258 40 1 8.7821 -0.2573 6.5502 41 1 9.6716 -0.9965 5.1941 42 1 10.5534 -0.9809 8.6162 43 1 7.3484 -4.0422 5.4393 44 1 8.7408 -3.4875 4.4768 45 1 5.9340 -2.2832 4.4914 46 1 6.7020 -3.1767 3.1559 47 1 2.7984 -1.0541 1.8757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021669101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:53 Heat of formation + Delta-G solvation = 78.771471 kcal Electronic energy + Delta-G solvation = -29759.425013 eV Core-core repulsion = 25909.073029 eV Total energy + Delta-G solvation = -3850.351984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.23763 -40.90513 -39.06598 -37.43201 -35.44944 -34.69074 -34.22448 -33.36196 -32.07019 -31.41565 -30.73169 -27.35934 -26.90631 -25.30759 -25.20253 -24.03202 -23.78611 -22.01010 -21.17514 -20.88170 -19.48509 -18.72931 -18.16178 -18.05443 -17.46856 -17.10325 -16.67614 -16.27449 -15.89294 -15.73334 -15.53510 -15.33602 -15.14721 -14.96118 -14.78821 -14.35154 -14.04633 -13.98025 -13.82398 -13.59827 -13.41671 -13.20069 -12.82664 -12.75207 -12.72113 -12.52226 -12.22094 -12.07876 -12.05272 -11.85156 -11.75841 -11.60287 -11.48486 -11.10105 -10.94061 -10.89364 -10.59024 -10.21987 -9.84385 -9.57925 -8.60857 -7.88367 -5.39331 -0.55971 -0.20212 1.44136 1.44409 1.50126 1.54698 1.64684 1.83923 2.05576 2.48380 2.81525 3.06154 3.25326 3.27789 3.44741 3.61182 3.63823 3.67079 3.82897 3.87468 3.95324 4.06339 4.13108 4.27336 4.31137 4.35166 4.45791 4.59642 4.65415 4.73907 4.77062 4.82039 4.85299 4.87512 4.92158 5.01221 5.02180 5.10776 5.15605 5.28595 5.38139 5.39159 5.43771 5.52344 5.59202 5.64822 5.77843 6.34636 6.40862 6.47994 6.66865 7.03949 7.14667 7.83305 8.35658 9.16588 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018164 B = 0.002868 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.102181 B = 9760.374983 C =10384.440869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.207 4.207 3 C -0.043 4.043 4 C 0.146 3.854 5 N -0.487 5.487 6 C 0.142 3.858 7 C -0.183 4.183 8 C 0.557 3.443 9 O -0.560 6.560 10 N -0.596 5.596 11 C 0.093 3.907 12 C -0.124 4.124 13 C -0.108 4.108 14 C -0.107 4.107 15 H 0.039 0.961 16 C 0.192 3.808 17 N -0.613 5.613 18 C -0.268 4.268 19 H 0.056 0.944 20 C -0.044 4.044 21 N -0.931 5.931 22 Si 0.967 3.033 23 H -0.283 1.283 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.137 3.863 27 C -0.096 4.096 28 C 0.166 3.834 29 H 0.078 0.922 30 C -0.015 4.015 31 H 0.264 0.736 32 H 0.193 0.807 33 H 0.189 0.811 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.108 0.892 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.005 0.995 42 H 0.252 0.748 43 H 0.046 0.954 44 H 0.018 0.982 45 H 0.043 0.957 46 H 0.076 0.924 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.742 9.690 -20.799 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.208 4.208 3 C -0.045 4.045 4 C -0.011 4.011 5 N -0.194 5.194 6 C -0.015 4.015 7 C -0.188 4.188 8 C 0.345 3.655 9 O -0.440 6.440 10 N -0.326 5.326 11 C -0.028 4.028 12 C -0.162 4.162 13 C -0.146 4.146 14 C -0.128 4.128 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.336 5.336 18 C -0.398 4.398 19 H 0.073 0.927 20 C -0.240 4.240 21 N -0.577 5.577 22 Si 0.795 3.205 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.200 1.200 26 C 0.011 3.989 27 C -0.136 4.136 28 C 0.063 3.937 29 H 0.095 0.905 30 C -0.041 4.041 31 H 0.280 0.720 32 H 0.210 0.790 33 H 0.206 0.794 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.126 0.874 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.023 0.977 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.061 0.939 46 H 0.094 0.906 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.333 9.598 -21.130 26.281 hybrid contribution -0.486 -0.917 2.359 2.577 sum -12.820 8.681 -18.771 24.332 Atomic orbital electron populations 1.25876 0.96475 0.95780 0.95687 1.19857 0.91957 1.04379 1.04602 1.16909 0.88936 1.02068 0.96622 1.23579 0.89504 0.92068 0.95955 1.67867 1.08042 1.17722 1.25749 1.23523 1.01758 0.89174 0.86999 1.20828 0.94530 1.04793 0.98619 1.18444 0.80560 0.84203 0.82301 1.90854 1.70063 1.24876 1.58170 1.48209 1.22590 1.19720 1.42129 1.22528 1.02844 0.80518 0.96916 1.21961 0.99087 0.99388 0.95812 1.21460 0.99114 0.94746 0.99284 1.21998 0.99296 0.95932 0.95623 0.94256 1.20560 0.91776 0.85716 0.95318 1.44331 1.76428 1.11335 1.01550 1.19431 1.09425 1.26809 0.84154 0.92674 1.25858 0.95006 1.00895 1.02247 1.70116 1.13055 1.41110 1.33381 0.85284 0.77757 0.77159 0.80289 1.20939 1.21288 1.20038 1.21220 0.95548 0.92302 0.89845 1.22189 0.97084 0.96091 0.98202 1.21082 0.92399 0.92381 0.87829 0.90460 1.21764 0.92385 0.92757 0.97230 0.72014 0.79010 0.79438 0.87899 0.87918 0.92907 0.87365 0.92129 0.90665 0.92450 0.97728 0.93886 0.93583 0.96445 0.93865 0.90590 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 19.25 74.32 1.43 0.02 16 2 C -0.21 -3.56 13.27 30.02 0.40 -3.16 16 3 C -0.04 -0.82 5.73 -21.35 -0.12 -0.95 16 4 C 0.15 2.33 10.91 85.04 0.93 3.25 16 5 N -0.49 -8.65 10.33 -193.75 -2.00 -10.65 16 6 C 0.14 2.58 8.55 85.04 0.73 3.31 16 7 C -0.18 -4.23 5.18 -20.02 -0.10 -4.34 16 8 C 0.56 16.58 7.29 86.79 0.63 17.21 16 9 O -0.56 -21.17 12.47 -3.86 -0.05 -21.21 16 10 N -0.60 -16.32 2.96 -797.81 -2.36 -18.69 16 11 C 0.09 1.71 4.90 86.47 0.42 2.13 16 12 C -0.12 -2.52 6.08 30.84 0.19 -2.34 16 13 C -0.11 -3.02 5.25 30.58 0.16 -2.86 16 14 C -0.11 -4.05 2.21 -10.76 -0.02 -4.07 16 15 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 16 C 0.19 9.32 4.58 86.28 0.40 9.71 16 17 N -0.61 -32.56 3.00 -698.99 -2.09 -34.65 16 18 C -0.27 -15.52 9.56 84.03 0.80 -14.72 16 19 H 0.06 3.20 7.85 -2.91 -0.02 3.18 16 20 C -0.04 -2.54 5.04 84.86 0.43 -2.11 16 21 N -0.93 -55.18 11.05 21.65 0.24 -54.94 16 22 Si 0.97 46.01 29.57 68.60 2.03 48.04 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 26 C 0.14 6.32 6.50 86.42 0.56 6.88 16 27 C -0.10 -3.91 3.80 30.66 0.12 -3.79 16 28 C 0.17 5.71 2.63 45.00 0.12 5.83 16 29 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 30 C -0.02 -0.35 9.51 22.99 0.22 -0.13 16 31 H 0.26 0.60 7.80 -4.42 -0.03 0.57 16 32 H 0.19 1.85 8.06 -2.91 -0.02 1.82 16 33 H 0.19 2.53 6.45 -2.91 -0.02 2.51 16 34 H 0.10 1.39 8.11 -2.39 -0.02 1.37 16 35 H 0.10 1.55 4.69 -2.39 -0.01 1.54 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.06 3.15 6.12 -2.39 -0.01 3.14 16 41 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 42 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.05 2.15 7.93 -2.39 -0.02 2.13 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.04 1.97 7.11 -2.39 -0.02 1.96 16 46 H 0.08 3.02 6.49 -2.39 -0.02 3.00 16 47 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -73.84 373.07 4.02 -69.82 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.97 Total: 12.40 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 7.28 Total: 9.89 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -6.22 Total: -118.94 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -73.84 4.02 -69.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021669101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.595 kcal (2) G-P(sol) polarization free energy of solvation -73.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds