Wall clock time and date at job start Sat Apr 11 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39731 * 119.58630 * 250.48669 * 3 2 1 5 5 C 1.37972 * 119.19763 * 180.02562 * 4 3 2 6 6 C 1.40248 * 118.40210 * 359.97438 * 5 4 3 7 7 C 1.47673 * 120.43898 * 179.97438 * 6 5 4 8 8 O 1.21569 * 119.99875 * 326.60134 * 7 6 5 9 9 N 1.34780 * 119.99736 * 146.33426 * 7 6 5 10 10 C 1.47062 * 120.84238 * 353.93125 * 9 7 6 11 11 C 1.52659 * 109.29553 * 233.37157 * 10 9 7 12 12 C 1.53148 * 109.69738 * 306.24547 * 11 10 9 13 13 C 1.52827 * 109.25974 * 60.71257 * 12 11 10 14 14 H 1.09003 * 109.47504 * 58.01085 * 13 12 11 15 15 C 1.53066 * 110.33352 * 178.55481 * 13 12 11 16 16 N 1.47065 * 108.33401 * 175.43769 * 15 13 12 17 17 C 1.36936 * 120.47271 * 126.70269 * 16 15 13 18 18 H 1.08003 * 120.00534 * 211.75418 * 17 16 15 19 19 C 1.38814 * 119.99845 * 31.75696 * 17 16 15 20 20 N 1.31621 * 119.99863 * 18.58315 * 19 17 16 21 21 Si 1.86799 * 120.00290 * 198.57911 * 19 17 16 22 22 H 1.48500 * 109.47057 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47017 * 119.99599 * 21 19 17 24 24 H 1.48491 * 109.47367 * 239.99999 * 21 19 17 25 25 C 1.46868 * 119.06046 * 306.68410 * 16 15 13 26 26 C 1.53322 * 109.09977 * 52.64915 * 25 16 15 27 27 C 1.46711 * 120.84059 * 174.21292 * 9 7 6 28 28 H 1.08998 * 109.52747 * 245.20707 * 27 9 7 29 29 C 1.39655 * 119.11323 * 0.25898 * 6 5 4 30 30 N 1.31481 * 120.71529 * 359.44379 * 29 6 5 31 31 H 4.51256 * 14.17614 * 359.97438 * 4 2 1 32 32 H 1.07996 * 120.40204 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.79995 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.54525 * 353.29728 * 10 9 7 35 35 H 1.09003 * 109.54132 * 113.55709 * 10 9 7 36 36 H 1.09008 * 109.52103 * 186.10875 * 11 10 9 37 37 H 1.09001 * 109.27335 * 66.23520 * 11 10 9 38 38 H 1.08997 * 109.50722 * 300.77819 * 12 11 10 39 39 H 1.08998 * 109.50668 * 180.64520 * 12 11 10 40 40 H 1.09004 * 109.69188 * 295.14454 * 15 13 12 41 41 H 1.09000 * 109.69258 * 55.68571 * 15 13 12 42 42 H 0.97001 * 120.00040 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.52967 * 172.53241 * 25 16 15 44 44 H 1.08997 * 109.52959 * 292.76002 * 25 16 15 45 45 H 1.09006 * 109.55118 * 186.06107 * 26 25 16 46 46 H 1.08995 * 109.56166 * 65.73797 * 26 25 16 47 47 H 1.08005 * 119.64047 * 179.72665 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2957 0.4068 1.1453 5 6 4.6754 0.4048 1.1363 6 6 5.3343 -0.0085 -0.0307 7 6 6.8097 -0.0276 -0.0900 8 8 7.4534 0.8044 0.5194 9 7 7.4428 -0.9708 -0.8154 10 6 6.6921 -2.0669 -1.4462 11 6 7.3028 -3.4022 -1.0287 12 6 8.8032 -3.4022 -1.3360 13 6 9.4792 -2.2812 -0.5474 14 1 9.2950 -2.4237 0.5174 15 6 10.9874 -2.2815 -0.8090 16 7 11.5767 -1.1237 -0.1198 17 6 12.6275 -1.2897 0.7424 18 1 12.7370 -0.6333 1.5930 19 6 13.5519 -2.3018 0.5232 20 7 13.6488 -2.8583 -0.6656 21 14 14.6585 -2.8738 1.9152 22 1 14.3535 -2.0946 3.1420 23 1 14.4221 -4.3167 2.1744 24 1 16.0789 -2.6651 1.5361 25 6 11.0225 0.2132 -0.3697 26 6 9.5074 0.1798 -0.1374 27 6 8.8989 -0.9335 -0.9905 28 1 9.1353 -0.7626 -2.0408 29 6 4.5765 -0.3959 -1.1379 30 7 3.2626 -0.3860 -1.0892 31 1 -1.0500 0.0003 -0.0005 32 1 2.7554 0.7193 2.0266 33 1 5.2345 0.7141 2.0070 34 1 5.6511 -2.0276 -1.1257 35 1 6.7451 -1.9683 -2.5305 36 1 6.8201 -4.2110 -1.5775 37 1 7.1514 -3.5485 0.0407 38 1 8.9562 -3.2402 -2.4029 39 1 9.2338 -4.3610 -1.0473 40 1 11.4268 -3.2014 -0.4231 41 1 11.1744 -2.2064 -1.8802 42 1 14.2946 -3.5658 -0.8188 43 1 11.4800 0.9305 0.3118 44 1 11.2270 0.5058 -1.3996 45 1 9.0732 1.1377 -0.4239 46 1 9.3038 -0.0147 0.9156 47 1 5.0751 -0.7115 -2.0425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021712694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:06 Heat of formation + Delta-G solvation = 84.515186 kcal Electronic energy + Delta-G solvation = -29684.821021 eV Core-core repulsion = 25834.718103 eV Total energy + Delta-G solvation = -3850.102918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.25720 -40.90999 -39.07580 -37.46323 -35.22307 -34.40258 -34.21167 -33.66690 -32.35347 -31.44863 -30.73025 -27.37141 -27.02717 -25.51902 -24.83443 -24.10445 -23.78622 -21.81375 -21.18382 -20.56375 -20.42444 -18.71663 -18.31382 -17.79287 -17.12089 -16.97913 -16.65917 -16.30536 -15.83697 -15.78566 -15.54275 -15.28862 -15.12289 -15.06419 -14.83870 -14.35444 -14.10718 -13.98917 -13.80692 -13.61377 -13.40433 -13.22417 -12.88219 -12.72319 -12.55868 -12.41074 -12.15711 -12.05886 -12.02645 -11.87735 -11.76883 -11.58106 -11.50551 -11.08433 -11.03531 -10.87342 -10.60062 -10.24277 -9.89344 -9.56774 -8.63229 -7.90427 -5.38293 -0.73177 0.06682 1.41249 1.42556 1.44678 1.55854 1.63453 1.78783 2.08618 2.48520 2.84711 2.90751 3.21854 3.31610 3.52618 3.61388 3.69830 3.81672 3.86301 3.90347 3.96619 4.05284 4.07614 4.27703 4.30360 4.43649 4.49809 4.59244 4.64413 4.66891 4.74989 4.83106 4.84511 4.89848 4.94187 5.01968 5.02538 5.09788 5.15482 5.26001 5.36965 5.40774 5.43953 5.46778 5.59046 5.65616 5.72745 6.35233 6.39551 6.45844 6.63362 7.05640 7.13070 7.82212 8.36260 9.14945 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023847 B = 0.002663 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.857904 B =10511.275633 C =10950.429734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.216 4.216 3 C 0.235 3.765 4 C -0.145 4.145 5 C -0.022 4.022 6 C -0.187 4.187 7 C 0.557 3.443 8 O -0.557 6.557 9 N -0.596 5.596 10 C 0.089 3.911 11 C -0.125 4.125 12 C -0.109 4.109 13 C -0.107 4.107 14 H 0.043 0.957 15 C 0.195 3.805 16 N -0.611 5.611 17 C -0.269 4.269 18 H 0.055 0.945 19 C -0.042 4.042 20 N -0.927 5.927 21 Si 0.963 3.037 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.288 1.288 25 C 0.136 3.864 26 C -0.095 4.095 27 C 0.166 3.834 28 H 0.076 0.924 29 C 0.139 3.861 30 N -0.491 5.491 31 H 0.272 0.728 32 H 0.172 0.828 33 H 0.153 0.847 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.006 0.994 42 H 0.252 0.748 43 H 0.046 0.954 44 H 0.015 0.985 45 H 0.076 0.924 46 H 0.046 0.954 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.522 1.491 -1.507 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.217 4.217 3 C 0.100 3.900 4 C -0.164 4.164 5 C -0.048 4.048 6 C -0.192 4.192 7 C 0.346 3.654 8 O -0.437 6.437 9 N -0.327 5.327 10 C -0.032 4.032 11 C -0.163 4.163 12 C -0.147 4.147 13 C -0.128 4.128 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.334 5.334 17 C -0.400 4.400 18 H 0.073 0.927 19 C -0.238 4.238 20 N -0.572 5.572 21 Si 0.791 3.209 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.215 1.215 25 C 0.010 3.990 26 C -0.134 4.134 27 C 0.063 3.937 28 H 0.094 0.906 29 C -0.020 4.020 30 N -0.200 5.200 31 H 0.288 0.712 32 H 0.189 0.811 33 H 0.171 0.829 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.033 0.967 45 H 0.095 0.905 46 H 0.064 0.936 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -27.510 1.556 -1.978 27.625 hybrid contribution 1.840 -0.070 1.402 2.314 sum -25.670 1.486 -0.577 25.719 Atomic orbital electron populations 1.25981 0.96320 0.93312 0.94864 1.19594 0.91513 1.05583 1.04961 1.17091 0.89218 0.93846 0.89800 1.22225 0.93716 1.00751 0.99748 1.21782 0.94299 0.91412 0.97301 1.21074 0.93649 1.06422 0.98044 1.18392 0.87202 0.81233 0.78614 1.90855 1.66815 1.41000 1.45047 1.48187 1.07488 1.26175 1.50893 1.22442 0.96283 0.85294 0.99207 1.21808 0.94922 0.97596 1.01971 1.21477 0.95474 0.97511 1.00246 1.21992 0.96650 0.95047 0.99084 0.93827 1.20491 0.88710 0.90382 0.93562 1.44341 1.35748 1.01804 1.51557 1.19407 1.02130 1.15760 1.02666 0.92735 1.25816 0.98415 1.01506 0.98075 1.70184 1.37809 1.28247 1.20968 0.85291 0.78240 0.77852 0.79562 1.19627 1.21210 1.21515 1.21234 0.93251 0.87226 0.97264 1.22186 0.94186 0.97993 0.99058 1.21072 0.77887 0.95624 0.99112 0.90625 1.23469 0.88376 0.92131 0.98029 1.67846 1.09739 1.15402 1.26978 0.71246 0.81077 0.82916 0.87720 0.88124 0.87382 0.92735 0.90758 0.92035 0.93507 0.97550 0.93892 0.93534 0.96662 0.90534 0.93562 0.79233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 19.25 74.32 1.43 0.60 16 2 C -0.22 -3.62 13.43 30.02 0.40 -3.22 16 3 C 0.23 4.66 6.59 40.59 0.27 4.93 16 4 C -0.14 -2.45 9.77 22.57 0.22 -2.23 16 5 C -0.02 -0.44 9.73 22.70 0.22 -0.22 16 6 C -0.19 -4.26 5.35 -19.95 -0.11 -4.37 16 7 C 0.56 16.23 7.34 86.74 0.64 16.86 16 8 O -0.56 -20.33 12.39 -3.93 -0.05 -20.38 16 9 N -0.60 -16.24 2.98 -799.85 -2.38 -18.62 16 10 C 0.09 1.66 4.73 86.16 0.41 2.07 16 11 C -0.12 -2.53 6.05 30.53 0.18 -2.34 16 12 C -0.11 -3.02 5.24 30.59 0.16 -2.86 16 13 C -0.11 -3.97 2.21 -10.74 -0.02 -3.99 16 14 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 15 C 0.19 9.35 4.62 86.29 0.40 9.75 16 16 N -0.61 -32.28 2.98 -698.87 -2.08 -34.36 16 17 C -0.27 -15.56 9.51 84.03 0.80 -14.76 16 18 H 0.05 3.17 7.90 -2.91 -0.02 3.15 16 19 C -0.04 -2.39 4.83 84.86 0.41 -1.97 16 20 N -0.93 -55.23 11.59 21.65 0.25 -54.98 16 21 Si 0.96 45.92 29.59 68.60 2.03 47.95 16 22 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 C 0.14 6.27 6.50 86.42 0.56 6.83 16 26 C -0.10 -3.80 3.79 30.67 0.12 -3.68 16 27 C 0.17 5.66 2.64 45.01 0.12 5.78 16 28 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 29 C 0.14 2.73 8.55 85.09 0.73 3.46 16 30 N -0.49 -10.57 10.26 -188.03 -1.93 -12.50 16 31 H 0.27 -0.20 7.80 -4.42 -0.03 -0.23 16 32 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.15 2.96 8.03 -2.91 -0.02 2.94 16 34 H 0.10 1.66 4.44 -2.39 -0.01 1.65 16 35 H 0.10 1.42 8.04 -2.39 -0.02 1.40 16 36 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.05 2.53 6.42 -2.38 -0.02 2.52 16 41 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 43 H 0.05 2.17 7.93 -2.39 -0.02 2.15 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.08 3.00 6.48 -2.38 -0.02 2.98 16 46 H 0.05 2.07 7.13 -2.39 -0.02 2.05 16 47 H 0.19 2.87 5.91 -2.91 -0.02 2.86 16 Total: -1.00 -74.89 372.80 3.75 -71.13 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.98 Total: 11.13 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 6.93 Total: 10.63 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -6.14 Total: -120.47 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.05 Total: -20.38 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -74.89 3.75 -71.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021712694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.649 kcal (2) G-P(sol) polarization free energy of solvation -74.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds