Wall clock time and date at job start Sat Apr 11 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39729 * 119.59247 * 315.89092 * 3 2 1 5 5 C 1.37970 * 119.19929 * 179.72715 * 4 3 2 6 6 C 1.40243 * 118.40234 * 0.53230 * 5 4 3 7 7 C 1.47671 * 120.44115 * 179.74837 * 6 5 4 8 8 O 1.21574 * 119.99817 * 213.03436 * 7 6 5 9 9 N 1.34775 * 120.00128 * 33.03911 * 7 6 5 10 10 C 1.46949 * 120.84286 * 5.20612 * 9 7 6 11 11 C 1.53612 * 108.77157 * 125.93483 * 10 9 7 12 12 C 1.53125 * 109.39990 * 54.31582 * 11 10 9 13 13 C 1.52854 * 109.34196 * 299.20855 * 12 11 10 14 14 H 1.09001 * 108.58942 * 302.88386 * 13 12 11 15 15 C 1.52860 * 109.61752 * 182.81954 * 13 12 11 16 16 N 1.46890 * 109.75348 * 291.90691 * 15 13 12 17 17 C 1.36933 * 120.77595 * 127.12725 * 16 15 13 18 18 H 1.08001 * 120.00150 * 214.43158 * 17 16 15 19 19 C 1.38812 * 119.99709 * 34.41812 * 17 16 15 20 20 N 1.31621 * 119.99984 * 17.65481 * 19 17 16 21 21 Si 1.86800 * 120.00144 * 197.64476 * 19 17 16 22 22 H 1.48495 * 109.47137 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47035 * 120.00363 * 21 19 17 24 24 H 1.48506 * 109.47038 * 240.00305 * 21 19 17 25 25 C 1.46975 * 118.45874 * 307.10385 * 16 15 13 26 26 C 1.53108 * 108.61697 * 54.31008 * 25 16 15 27 27 C 1.47300 * 120.84608 * 185.48187 * 9 7 6 28 28 H 1.09002 * 110.07247 * 355.07515 * 27 9 7 29 29 C 1.39657 * 119.11455 * 359.73014 * 6 5 4 30 30 N 1.31480 * 120.71415 * 359.97438 * 29 6 5 31 31 H 4.51262 * 14.17468 * 359.97438 * 4 2 1 32 32 H 1.07998 * 120.39530 * 359.97285 * 4 3 2 33 33 H 1.08002 * 120.79851 * 180.25859 * 5 4 3 34 34 H 1.08995 * 109.54331 * 245.85090 * 10 9 7 35 35 H 1.09006 * 109.54506 * 6.12269 * 10 9 7 36 36 H 1.08997 * 109.61979 * 294.27162 * 11 10 9 37 37 H 1.09002 * 109.39465 * 174.22018 * 11 10 9 38 38 H 1.09002 * 109.48992 * 179.25223 * 12 11 10 39 39 H 1.09000 * 109.49153 * 59.17031 * 12 11 10 40 40 H 1.09005 * 108.88185 * 172.03969 * 15 13 12 41 41 H 1.08996 * 109.63787 * 52.23803 * 15 13 12 42 42 H 0.97000 * 119.99891 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.61188 * 294.57344 * 25 16 15 44 44 H 1.08993 * 109.61506 * 174.04834 * 25 16 15 45 45 H 1.09004 * 109.45294 * 184.62075 * 26 25 16 46 46 H 1.08996 * 109.43466 * 64.67366 * 26 25 16 47 47 H 1.08006 * 119.64104 * 179.97438 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2964 -0.8715 0.8457 5 6 4.6760 -0.8680 0.8350 6 6 5.3343 0.0253 -0.0226 7 6 6.8096 0.0708 -0.0663 8 8 7.3792 1.1232 -0.2810 9 7 7.5247 -1.0543 0.1316 10 6 6.8572 -2.3551 0.2794 11 6 7.4548 -3.3361 -0.7405 12 6 8.9760 -3.3814 -0.5716 13 6 9.5551 -1.9895 -0.8244 14 1 9.2586 -1.6658 -1.8221 15 6 11.0797 -2.0424 -0.7264 16 7 11.4790 -2.3069 0.6622 17 6 12.3316 -3.3355 0.9623 18 1 12.2130 -3.8834 1.8855 19 6 13.3480 -3.6744 0.0798 20 7 13.7202 -2.8239 -0.8532 21 14 14.1879 -5.3373 0.2165 22 1 13.5897 -6.1032 1.3393 23 1 14.0033 -6.0906 -1.0499 24 1 15.6381 -5.1402 0.4683 25 6 10.9426 -1.4414 1.7222 26 6 9.4149 -1.4353 1.6218 27 6 8.9949 -1.0106 0.2114 28 1 9.3510 -0.0016 0.0033 29 6 4.5758 0.8710 -0.8350 30 7 3.2620 0.8344 -0.8010 31 1 -1.0500 -0.0002 0.0009 32 1 2.7565 -1.5429 1.4969 33 1 5.2357 -1.5342 1.4749 34 1 7.0149 -2.7332 1.2894 35 1 5.7891 -2.2399 0.0943 36 1 7.2111 -3.0074 -1.7507 37 1 7.0408 -4.3303 -0.5720 38 1 9.4004 -4.0871 -1.2857 39 1 9.2201 -3.6982 0.4424 40 1 11.4872 -1.0833 -1.0462 41 1 11.4610 -2.8336 -1.3719 42 1 14.4308 -3.0605 -1.4696 43 1 11.3218 -0.4275 1.5935 44 1 11.2437 -1.8265 2.6963 45 1 9.0061 -0.7337 2.3491 46 1 9.0338 -2.4354 1.8284 47 1 5.0740 1.5626 -1.4983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021712696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:35 Heat of formation + Delta-G solvation = 92.534967 kcal Electronic energy + Delta-G solvation = -29678.615423 eV Core-core repulsion = 25828.860269 eV Total energy + Delta-G solvation = -3849.755154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.17862 -39.85846 -38.00542 -35.72319 -34.32838 -33.38978 -32.63819 -32.27848 -31.04828 -30.24303 -29.46229 -26.01837 -25.69926 -24.36158 -24.03198 -22.47216 -22.12226 -21.44847 -19.89928 -19.84514 -17.98003 -17.42791 -16.95545 -16.61311 -16.51169 -15.90264 -15.17127 -15.03119 -14.77838 -14.53920 -14.36274 -14.09873 -13.87834 -13.66282 -13.41474 -13.13872 -12.98787 -12.66663 -12.54320 -12.33150 -12.28658 -11.66792 -11.58274 -11.27753 -11.21312 -11.04163 -10.80896 -10.67424 -10.53698 -10.28548 -10.23562 -10.13646 -10.07932 -9.97726 -9.81596 -9.62834 -9.40939 -9.18602 -8.53328 -8.37328 -6.62668 -5.83893 -3.31874 0.05527 0.80621 2.21181 2.24766 2.85566 3.01283 3.32942 3.41760 3.43285 3.49903 3.63431 4.20476 4.34899 4.41323 4.45143 4.62655 4.68777 4.84061 5.04824 5.09292 5.20704 5.30735 5.35053 5.39269 5.41978 5.45936 5.57258 5.59440 5.64600 5.68782 5.82262 5.99750 6.01583 6.11698 6.17046 6.27345 6.35559 6.40228 6.45321 6.63185 6.74419 6.82937 6.90716 6.97092 7.00450 7.21638 7.39955 7.47351 7.54497 7.78432 8.12915 8.43919 9.16610 9.78404 10.40465 11.24119 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.002581 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.735003 B =10847.825719 C =11192.819312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.150 4.150 3 C 0.241 3.759 4 C -0.153 4.153 5 C -0.047 4.047 6 C -0.170 4.170 7 C 0.559 3.441 8 O -0.533 6.533 9 N -0.596 5.596 10 C 0.090 3.910 11 C -0.135 4.135 12 C -0.106 4.106 13 C -0.115 4.115 14 H 0.059 0.941 15 C 0.183 3.817 16 N -0.585 5.585 17 C -0.257 4.257 18 H 0.062 0.938 19 C 0.011 3.989 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.147 3.853 26 C -0.140 4.140 27 C 0.156 3.844 28 H 0.096 0.904 29 C 0.161 3.839 30 N -0.472 5.472 31 H 0.231 0.769 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.021 0.979 41 H 0.078 0.922 42 H 0.254 0.746 43 H 0.020 0.980 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.065 0.935 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.983 0.856 2.670 23.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.151 4.151 3 C 0.105 3.895 4 C -0.173 4.173 5 C -0.073 4.073 6 C -0.175 4.175 7 C 0.346 3.654 8 O -0.411 6.411 9 N -0.327 5.327 10 C -0.032 4.032 11 C -0.173 4.173 12 C -0.143 4.143 13 C -0.136 4.136 14 H 0.077 0.923 15 C 0.056 3.944 16 N -0.307 5.307 17 C -0.387 4.387 18 H 0.080 0.920 19 C -0.189 4.189 20 N -0.537 5.537 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.020 3.980 26 C -0.180 4.180 27 C 0.055 3.945 28 H 0.114 0.886 29 C 0.002 3.998 30 N -0.180 5.180 31 H 0.247 0.753 32 H 0.164 0.836 33 H 0.173 0.827 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.039 0.961 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -22.957 1.952 1.896 23.118 hybrid contribution 0.759 -1.470 0.463 1.718 sum -22.198 0.482 2.359 22.328 Atomic orbital electron populations 1.24965 0.95641 0.97400 0.97340 1.19296 0.91047 1.02353 1.02385 1.16756 0.88197 0.92179 0.92322 1.21987 0.94345 1.00518 1.00420 1.22030 0.94161 0.95044 0.96062 1.21212 0.95371 0.99899 1.01034 1.17984 0.85837 0.84102 0.77470 1.90809 1.71501 1.29754 1.49020 1.48457 1.08126 1.06257 1.69898 1.22371 0.97086 0.83644 1.00117 1.22063 0.98069 0.98365 0.98816 1.21484 0.92163 0.97268 1.03413 1.22047 1.00302 0.94309 0.96959 0.92295 1.20566 0.86638 0.99977 0.87199 1.43925 1.52378 1.33388 1.01053 1.19067 1.06446 1.06955 1.06253 0.91999 1.25197 0.96063 0.98070 0.99587 1.70059 1.29766 1.33268 1.20647 0.86319 0.79162 0.84285 0.77538 1.20161 1.21533 1.21680 1.20884 0.89552 0.94224 0.93376 1.22413 0.99967 1.00797 0.94855 1.21415 0.75916 1.01008 0.96209 0.88560 1.22932 0.87874 0.94286 0.94704 1.67840 1.09691 1.20369 1.20092 0.75271 0.83618 0.82732 0.90826 0.89522 0.92049 0.91203 0.91969 0.90456 0.96098 0.90331 0.93612 0.96165 0.92374 0.93035 0.91664 0.80992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 19.25 29.55 0.57 -0.34 16 2 C -0.15 -1.45 13.43 -38.84 -0.52 -1.97 16 3 C 0.24 2.61 6.59 -84.91 -0.56 2.05 16 4 C -0.15 -1.31 9.77 -39.12 -0.38 -1.69 16 5 C -0.05 -0.43 7.48 -38.93 -0.29 -0.73 16 6 C -0.17 -2.03 5.40 -104.76 -0.57 -2.59 16 7 C 0.56 8.28 7.43 -12.41 -0.09 8.19 16 8 O -0.53 -9.79 16.25 5.30 0.09 -9.70 16 9 N -0.60 -8.39 2.65 -165.77 -0.44 -8.83 16 10 C 0.09 0.99 4.34 -3.48 -0.02 0.98 16 11 C -0.13 -1.62 6.10 -26.35 -0.16 -1.79 16 12 C -0.11 -1.68 4.84 -26.74 -0.13 -1.81 16 13 C -0.12 -2.06 2.50 -90.70 -0.23 -2.29 16 14 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 15 C 0.18 4.12 4.62 -3.90 -0.02 4.11 16 16 N -0.58 -13.76 2.63 -172.56 -0.45 -14.21 16 17 C -0.26 -6.70 9.51 -15.06 -0.14 -6.84 16 18 H 0.06 1.60 7.89 -52.49 -0.41 1.18 16 19 C 0.01 0.29 4.85 -17.43 -0.08 0.21 16 20 N -0.89 -25.37 11.75 55.49 0.65 -24.72 16 21 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.15 2.95 6.51 -3.73 -0.02 2.93 16 26 C -0.14 -2.32 5.04 -26.59 -0.13 -2.45 16 27 C 0.16 2.63 2.61 -67.34 -0.18 2.45 16 28 H 0.10 1.85 7.05 -51.93 -0.37 1.49 16 29 C 0.16 1.96 10.76 -17.17 -0.18 1.77 16 30 N -0.47 -5.88 10.26 -10.78 -0.11 -5.99 16 31 H 0.23 0.54 7.80 -54.09 -0.42 0.12 16 32 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.16 1.13 5.86 -52.49 -0.31 0.83 16 34 H 0.07 0.74 7.17 -51.93 -0.37 0.37 16 35 H 0.09 0.78 4.25 -51.93 -0.22 0.56 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.34 6.22 -51.93 -0.32 1.01 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.08 1.97 6.59 -51.93 -0.34 1.63 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.15 7.94 -51.93 -0.41 0.73 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 1.04 5.41 -51.93 -0.28 0.76 16 47 H 0.17 1.96 7.97 -52.48 -0.42 1.54 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -31.66 373.02 -9.21 -40.87 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.40 Total: 0.85 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -3.14 Total: 0.18 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.35 Total: -53.75 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.66 -9.21 -40.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021712696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.409 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds