Wall clock time and date at job start Sat Apr 11 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39729 * 119.59247 * 315.89092 * 3 2 1 5 5 C 1.37970 * 119.19929 * 179.72715 * 4 3 2 6 6 C 1.40243 * 118.40234 * 0.53230 * 5 4 3 7 7 C 1.47671 * 120.44115 * 179.74837 * 6 5 4 8 8 O 1.21574 * 119.99817 * 213.03436 * 7 6 5 9 9 N 1.34775 * 120.00128 * 33.03911 * 7 6 5 10 10 C 1.46949 * 120.84286 * 5.20612 * 9 7 6 11 11 C 1.53612 * 108.77157 * 125.93483 * 10 9 7 12 12 C 1.53125 * 109.39990 * 54.31582 * 11 10 9 13 13 C 1.52854 * 109.34196 * 299.20855 * 12 11 10 14 14 H 1.09001 * 108.58942 * 302.88386 * 13 12 11 15 15 C 1.52860 * 109.61752 * 182.81954 * 13 12 11 16 16 N 1.46890 * 109.75348 * 291.90691 * 15 13 12 17 17 C 1.36933 * 120.77595 * 127.12725 * 16 15 13 18 18 H 1.08001 * 120.00150 * 214.43158 * 17 16 15 19 19 C 1.38812 * 119.99709 * 34.41812 * 17 16 15 20 20 N 1.31621 * 119.99984 * 17.65481 * 19 17 16 21 21 Si 1.86800 * 120.00144 * 197.64476 * 19 17 16 22 22 H 1.48495 * 109.47137 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47035 * 120.00363 * 21 19 17 24 24 H 1.48506 * 109.47038 * 240.00305 * 21 19 17 25 25 C 1.46975 * 118.45874 * 307.10385 * 16 15 13 26 26 C 1.53108 * 108.61697 * 54.31008 * 25 16 15 27 27 C 1.47300 * 120.84608 * 185.48187 * 9 7 6 28 28 H 1.09002 * 110.07247 * 355.07515 * 27 9 7 29 29 C 1.39657 * 119.11455 * 359.73014 * 6 5 4 30 30 N 1.31480 * 120.71415 * 359.97438 * 29 6 5 31 31 H 4.51262 * 14.17468 * 359.97438 * 4 2 1 32 32 H 1.07998 * 120.39530 * 359.97285 * 4 3 2 33 33 H 1.08002 * 120.79851 * 180.25859 * 5 4 3 34 34 H 1.08995 * 109.54331 * 245.85090 * 10 9 7 35 35 H 1.09006 * 109.54506 * 6.12269 * 10 9 7 36 36 H 1.08997 * 109.61979 * 294.27162 * 11 10 9 37 37 H 1.09002 * 109.39465 * 174.22018 * 11 10 9 38 38 H 1.09002 * 109.48992 * 179.25223 * 12 11 10 39 39 H 1.09000 * 109.49153 * 59.17031 * 12 11 10 40 40 H 1.09005 * 108.88185 * 172.03969 * 15 13 12 41 41 H 1.08996 * 109.63787 * 52.23803 * 15 13 12 42 42 H 0.97000 * 119.99891 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.61188 * 294.57344 * 25 16 15 44 44 H 1.08993 * 109.61506 * 174.04834 * 25 16 15 45 45 H 1.09004 * 109.45294 * 184.62075 * 26 25 16 46 46 H 1.08996 * 109.43466 * 64.67366 * 26 25 16 47 47 H 1.08006 * 119.64104 * 179.97438 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2964 -0.8715 0.8457 5 6 4.6760 -0.8680 0.8350 6 6 5.3343 0.0253 -0.0226 7 6 6.8096 0.0708 -0.0663 8 8 7.3792 1.1232 -0.2810 9 7 7.5247 -1.0543 0.1316 10 6 6.8572 -2.3551 0.2794 11 6 7.4548 -3.3361 -0.7405 12 6 8.9760 -3.3814 -0.5716 13 6 9.5551 -1.9895 -0.8244 14 1 9.2586 -1.6658 -1.8221 15 6 11.0797 -2.0424 -0.7264 16 7 11.4790 -2.3069 0.6622 17 6 12.3316 -3.3355 0.9623 18 1 12.2130 -3.8834 1.8855 19 6 13.3480 -3.6744 0.0798 20 7 13.7202 -2.8239 -0.8532 21 14 14.1879 -5.3373 0.2165 22 1 13.5897 -6.1032 1.3393 23 1 14.0033 -6.0906 -1.0499 24 1 15.6381 -5.1402 0.4683 25 6 10.9426 -1.4414 1.7222 26 6 9.4149 -1.4353 1.6218 27 6 8.9949 -1.0106 0.2114 28 1 9.3510 -0.0016 0.0033 29 6 4.5758 0.8710 -0.8350 30 7 3.2620 0.8344 -0.8010 31 1 -1.0500 -0.0002 0.0009 32 1 2.7565 -1.5429 1.4969 33 1 5.2357 -1.5342 1.4749 34 1 7.0149 -2.7332 1.2894 35 1 5.7891 -2.2399 0.0943 36 1 7.2111 -3.0074 -1.7507 37 1 7.0408 -4.3303 -0.5720 38 1 9.4004 -4.0871 -1.2857 39 1 9.2201 -3.6982 0.4424 40 1 11.4872 -1.0833 -1.0462 41 1 11.4610 -2.8336 -1.3719 42 1 14.4308 -3.0605 -1.4696 43 1 11.3218 -0.4275 1.5935 44 1 11.2437 -1.8265 2.6963 45 1 9.0061 -0.7337 2.3491 46 1 9.0338 -2.4354 1.8284 47 1 5.0740 1.5626 -1.4983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021712696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:34 Heat of formation + Delta-G solvation = 74.154870 kcal Electronic energy + Delta-G solvation = -29679.412444 eV Core-core repulsion = 25828.860269 eV Total energy + Delta-G solvation = -3850.552175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.18897 -40.92679 -39.33809 -37.18099 -35.16814 -34.48139 -34.06364 -33.50373 -32.03629 -31.58643 -31.01851 -27.37469 -27.07042 -25.54372 -24.96357 -23.84762 -23.54671 -22.86238 -21.10890 -20.52409 -19.51619 -18.54973 -18.35086 -17.66338 -17.38914 -16.98592 -16.82493 -16.22606 -15.96144 -15.77883 -15.37910 -15.24415 -15.11244 -15.03022 -14.72922 -14.45879 -14.23618 -14.10533 -13.66593 -13.60197 -13.50827 -13.20662 -12.93992 -12.63731 -12.52999 -12.36009 -12.15900 -12.01675 -11.86398 -11.84319 -11.77636 -11.51292 -11.38133 -11.25334 -11.04499 -10.86653 -10.54890 -10.54361 -9.98483 -9.59834 -8.60465 -7.86954 -5.38545 -0.72906 0.06867 1.39356 1.46552 1.49305 1.59458 1.62572 1.78314 2.05784 2.51484 2.86755 2.91401 3.28316 3.30103 3.58056 3.63077 3.67238 3.79225 3.88130 3.94725 3.96477 4.04061 4.08841 4.22136 4.38107 4.44546 4.51858 4.55596 4.63244 4.68573 4.74047 4.83154 4.87687 4.90474 4.99093 5.00720 5.04611 5.10004 5.13958 5.19861 5.32478 5.40875 5.44707 5.53776 5.56361 5.67256 5.69831 6.33803 6.42339 6.46119 6.67543 6.98971 7.15363 7.83345 8.41915 9.19262 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.002581 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.735003 B =10847.825719 C =11192.819312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.216 4.216 3 C 0.232 3.768 4 C -0.140 4.140 5 C -0.035 4.035 6 C -0.183 4.183 7 C 0.560 3.440 8 O -0.580 6.580 9 N -0.592 5.592 10 C 0.086 3.914 11 C -0.127 4.127 12 C -0.099 4.099 13 C -0.105 4.105 14 H 0.053 0.947 15 C 0.194 3.806 16 N -0.597 5.597 17 C -0.257 4.257 18 H 0.069 0.931 19 C -0.045 4.045 20 N -0.935 5.935 21 Si 0.963 3.037 22 H -0.260 1.260 23 H -0.292 1.292 24 H -0.296 1.296 25 C 0.142 3.858 26 C -0.122 4.122 27 C 0.164 3.836 28 H 0.064 0.936 29 C 0.152 3.848 30 N -0.499 5.499 31 H 0.271 0.729 32 H 0.182 0.818 33 H 0.183 0.817 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.047 0.953 39 H 0.069 0.931 40 H -0.018 1.018 41 H 0.047 0.953 42 H 0.249 0.751 43 H 0.003 0.997 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.183 -1.531 4.828 27.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.217 4.217 3 C 0.097 3.903 4 C -0.159 4.159 5 C -0.060 4.060 6 C -0.188 4.188 7 C 0.349 3.651 8 O -0.461 6.461 9 N -0.322 5.322 10 C -0.034 4.034 11 C -0.165 4.165 12 C -0.137 4.137 13 C -0.126 4.126 14 H 0.071 0.929 15 C 0.068 3.932 16 N -0.321 5.321 17 C -0.387 4.387 18 H 0.086 0.914 19 C -0.241 4.241 20 N -0.580 5.580 21 Si 0.791 3.209 22 H -0.184 1.184 23 H -0.218 1.218 24 H -0.224 1.224 25 C 0.016 3.984 26 C -0.162 4.162 27 C 0.061 3.939 28 H 0.082 0.918 29 C -0.008 4.008 30 N -0.208 5.208 31 H 0.287 0.713 32 H 0.200 0.800 33 H 0.200 0.800 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.000 1.000 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.021 0.979 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -27.202 -0.458 4.081 27.510 hybrid contribution 1.926 -0.647 -0.205 2.042 sum -25.276 -1.106 3.876 25.595 Atomic orbital electron populations 1.25983 0.96331 0.94133 0.94059 1.19627 0.91564 1.05245 1.05273 1.17214 0.89253 0.91858 0.91937 1.22331 0.93974 0.99918 0.99675 1.22286 0.94564 0.94160 0.95008 1.20907 0.93156 1.01802 1.02966 1.18404 0.87050 0.83393 0.76266 1.90785 1.72679 1.31560 1.51098 1.48376 1.06668 1.07641 1.69565 1.22717 0.98214 0.81401 1.01109 1.22020 0.94690 1.00592 0.99164 1.21382 0.95208 0.94715 1.02347 1.21807 0.96789 0.96706 0.97319 0.92859 1.20285 0.89815 0.96631 0.86513 1.44123 1.52434 1.33665 1.01831 1.19410 1.06101 1.07161 1.06076 0.91361 1.25962 0.97168 1.01237 0.99727 1.70219 1.30690 1.35182 1.21860 0.85287 0.77581 0.80393 0.77649 1.18436 1.21832 1.22359 1.21016 0.92149 0.92656 0.92610 1.22196 0.96822 1.02290 0.94866 1.21013 0.78131 0.98749 0.96039 0.91787 1.22836 0.88156 0.94593 0.95173 1.67825 1.09598 1.21805 1.21571 0.71266 0.80037 0.80001 0.88384 0.86694 0.92382 0.87899 0.93413 0.91250 0.99975 0.93466 0.94218 0.97888 0.91648 0.91027 0.89911 0.81929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 19.25 74.32 1.43 0.60 16 2 C -0.22 -3.61 13.43 30.02 0.40 -3.21 16 3 C 0.23 4.57 6.59 40.59 0.27 4.84 16 4 C -0.14 -1.87 9.77 22.57 0.22 -1.65 16 5 C -0.03 -0.51 7.48 22.69 0.17 -0.34 16 6 C -0.18 -4.13 5.40 -19.96 -0.11 -4.24 16 7 C 0.56 16.39 7.43 86.74 0.64 17.04 16 8 O -0.58 -22.22 16.25 -3.95 -0.06 -22.29 16 9 N -0.59 -15.80 2.65 -796.63 -2.11 -17.91 16 10 C 0.09 1.55 4.34 86.50 0.38 1.93 16 11 C -0.13 -2.64 6.10 30.84 0.19 -2.45 16 12 C -0.10 -3.03 4.84 30.59 0.15 -2.88 16 13 C -0.11 -3.88 2.50 -10.84 -0.03 -3.91 16 14 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 15 C 0.19 9.32 4.62 86.26 0.40 9.72 16 16 N -0.60 -28.93 2.63 -699.87 -1.84 -30.76 16 17 C -0.26 -13.55 9.51 84.03 0.80 -12.75 16 18 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 19 C -0.04 -2.45 4.85 84.86 0.41 -2.04 16 20 N -0.93 -55.49 11.75 21.65 0.25 -55.23 16 21 Si 0.96 43.77 29.59 68.60 2.03 45.80 16 22 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 25 C 0.14 5.77 6.51 86.32 0.56 6.33 16 26 C -0.12 -3.88 5.04 30.69 0.15 -3.72 16 27 C 0.16 5.55 2.61 44.94 0.12 5.67 16 28 H 0.06 2.61 7.05 -2.39 -0.02 2.59 16 29 C 0.15 3.71 10.76 85.09 0.92 4.63 16 30 N -0.50 -12.23 10.26 -188.03 -1.93 -14.16 16 31 H 0.27 -0.20 7.80 -4.42 -0.03 -0.23 16 32 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.18 1.65 5.86 -2.91 -0.02 1.64 16 34 H 0.10 1.39 7.17 -2.39 -0.02 1.37 16 35 H 0.12 1.50 4.25 -2.38 -0.01 1.49 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 2.25 6.22 -2.39 -0.01 2.24 16 40 H -0.02 -0.97 8.14 -2.38 -0.02 -0.98 16 41 H 0.05 2.53 6.59 -2.39 -0.02 2.51 16 42 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 44 H 0.07 2.54 7.94 -2.39 -0.02 2.52 16 45 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 46 H 0.08 2.38 5.41 -2.39 -0.01 2.37 16 47 H 0.16 4.04 7.97 -2.91 -0.02 4.02 16 Total: -1.00 -75.16 373.02 4.40 -70.76 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.99 Total: 10.25 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 7.07 Total: 13.55 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -5.62 Total: -118.07 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.06 Total: -22.29 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -75.16 4.40 -70.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021712696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.918 kcal (2) G-P(sol) polarization free energy of solvation -75.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds