Wall clock time and date at job start Sat Apr 11 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39985 * 120.46222 * 250.89191 * 3 2 1 5 5 C 1.38218 * 118.37001 * 179.97438 * 4 3 2 6 6 C 1.39489 * 119.20466 * 359.97438 * 5 4 3 7 7 C 1.47997 * 119.57028 * 179.97438 * 6 5 4 8 8 O 1.21542 * 119.99634 * 21.72677 * 7 6 5 9 9 N 1.34771 * 120.00126 * 201.73165 * 7 6 5 10 10 C 1.46768 * 120.76121 * 5.91645 * 9 7 6 11 11 C 1.53138 * 109.06246 * 234.03055 * 10 9 7 12 12 C 1.53117 * 109.47970 * 306.01331 * 11 10 9 13 13 C 1.52863 * 109.34254 * 60.65213 * 12 11 10 14 14 H 1.08996 * 108.59701 * 57.11835 * 13 12 11 15 15 C 1.52773 * 110.20447 * 176.76378 * 13 12 11 16 16 N 1.46889 * 109.23795 * 67.36231 * 15 13 12 17 17 C 1.36940 * 120.77353 * 233.29571 * 16 15 13 18 18 H 1.07999 * 119.99705 * 147.50726 * 17 16 15 19 19 C 1.38813 * 120.00144 * 327.51675 * 17 16 15 20 20 N 1.31617 * 120.00083 * 169.00467 * 19 17 16 21 21 Si 1.86802 * 119.99934 * 348.98935 * 19 17 16 22 22 H 1.48501 * 109.46686 * 92.00212 * 21 19 17 23 23 H 1.48496 * 109.47497 * 212.00061 * 21 19 17 24 24 H 1.48504 * 109.47119 * 332.00463 * 21 19 17 25 25 C 1.46976 * 118.45262 * 53.31780 * 16 15 13 26 26 C 1.53090 * 108.61997 * 305.68892 * 25 16 15 27 27 C 1.47309 * 120.84403 * 186.04208 * 9 7 6 28 28 H 1.08997 * 110.07204 * 4.19190 * 27 9 7 29 29 N 1.32819 * 120.86323 * 0.26289 * 6 5 4 30 30 C 1.31302 * 121.78539 * 359.46662 * 29 6 5 31 31 H 4.52940 * 13.94732 * 0.02562 * 4 2 1 32 32 H 1.07999 * 120.81669 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.39902 * 179.97438 * 5 4 3 34 34 H 1.08991 * 109.45901 * 114.19360 * 10 9 7 35 35 H 1.09000 * 109.66538 * 353.98893 * 10 9 7 36 36 H 1.08997 * 109.46844 * 186.01562 * 11 10 9 37 37 H 1.09003 * 109.47340 * 66.01476 * 11 10 9 38 38 H 1.09004 * 109.49657 * 300.69285 * 12 11 10 39 39 H 1.08999 * 109.49614 * 180.61607 * 12 11 10 40 40 H 1.09004 * 109.51974 * 307.41716 * 15 13 12 41 41 H 1.09001 * 109.51393 * 187.30431 * 15 13 12 42 42 H 0.97001 * 120.00013 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.60602 * 65.42849 * 25 16 15 44 44 H 1.08998 * 109.61115 * 185.77152 * 25 16 15 45 45 H 1.09007 * 109.44640 * 175.37225 * 26 25 16 46 46 H 1.08996 * 109.45337 * 295.29958 * 26 25 16 47 47 H 1.08001 * 119.65084 * 180.25337 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3155 0.3959 1.1401 5 6 4.6968 0.3795 1.0926 6 6 5.3327 -0.0276 -0.0802 7 6 6.8113 -0.0478 -0.1402 8 8 7.4603 -0.1035 0.8859 9 7 7.4380 -0.0042 -1.3325 10 6 6.6787 0.1930 -2.5729 11 6 7.0170 -0.9356 -3.5512 12 6 8.5346 -1.0098 -3.7402 13 6 9.1987 -1.3018 -2.3946 14 1 8.7852 -2.2285 -1.9968 15 6 10.7076 -1.4596 -2.5741 16 7 11.2872 -0.1657 -2.9585 17 6 12.0720 -0.0535 -4.0751 18 1 12.0670 0.8614 -4.6489 19 6 12.8738 -1.1158 -4.4694 20 7 13.4588 -1.0966 -5.6483 21 14 13.1229 -2.5725 -3.3268 22 1 12.1035 -3.6117 -3.6204 23 1 14.4802 -3.1381 -3.5343 24 1 12.9828 -2.1258 -1.9175 25 6 11.0054 1.0056 -2.1166 26 6 9.4883 1.1484 -1.9696 27 6 8.9005 -0.1560 -1.4230 28 1 9.3160 -0.3699 -0.4383 29 7 4.6285 -0.3921 -1.1458 30 6 3.3155 -0.3952 -1.1392 31 1 -1.0500 -0.0006 -0.0001 32 1 2.7964 0.7054 2.0352 33 1 5.2768 0.6784 1.9533 34 1 6.9484 1.1520 -3.0151 35 1 5.6107 0.1791 -2.3554 36 1 6.5406 -0.7388 -4.5116 37 1 6.6538 -1.8829 -3.1527 38 1 8.9000 -0.0585 -4.1271 39 1 8.7750 -1.8058 -4.4448 40 1 10.9068 -2.1941 -3.3545 41 1 11.1528 -1.7940 -1.6371 42 1 14.0194 -1.8387 -5.9237 43 1 11.4568 0.8669 -1.1342 44 1 11.4161 1.9000 -2.5849 45 1 9.2655 1.9635 -1.2810 46 1 9.0481 1.3653 -2.9429 47 1 2.7775 -0.7020 -2.0239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021716635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:39 Heat of formation + Delta-G solvation = 102.868240 kcal Electronic energy + Delta-G solvation = -29842.772787 eV Core-core repulsion = 25993.465718 eV Total energy + Delta-G solvation = -3849.307070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22511 -39.88251 -38.11512 -35.80812 -34.81103 -32.91163 -32.57574 -32.42229 -31.16860 -30.33387 -29.99441 -26.06286 -25.60157 -24.30915 -24.06580 -22.66906 -22.23179 -21.35713 -20.25684 -19.63795 -18.04049 -17.53775 -17.23103 -16.67757 -16.16006 -15.94563 -15.39135 -15.13709 -15.00329 -14.51112 -14.44775 -14.04505 -13.99047 -13.83053 -13.57274 -13.21560 -12.84620 -12.79680 -12.58390 -12.35302 -12.27781 -12.00156 -11.79195 -11.63299 -11.39107 -10.98748 -10.84430 -10.54826 -10.49827 -10.46899 -10.30685 -10.12274 -10.03428 -9.82733 -9.60327 -9.45941 -9.27164 -9.11850 -8.63178 -8.32978 -6.86625 -5.91094 -3.35297 -0.04894 0.73462 2.15733 2.17167 2.89543 2.94708 3.33644 3.50111 3.50382 3.51797 3.62731 3.88421 4.29190 4.33903 4.54192 4.62383 4.71577 4.96941 5.07322 5.18356 5.22486 5.29987 5.32525 5.34330 5.44225 5.49867 5.53365 5.63240 5.73040 5.77293 5.87188 5.94401 6.13388 6.14874 6.20956 6.26533 6.32082 6.36999 6.39811 6.46999 6.63801 6.66016 6.74341 6.80538 6.86907 6.93316 7.02823 7.24800 7.55221 8.03596 8.12539 8.37023 8.96096 9.73785 10.13871 11.24912 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025816 B = 0.002781 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.352791 B =10066.485249 C =10417.928919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.156 4.156 3 C -0.023 4.023 4 C -0.057 4.057 5 C -0.111 4.111 6 C 0.095 3.905 7 C 0.565 3.435 8 O -0.537 6.537 9 N -0.579 5.579 10 C 0.071 3.929 11 C -0.125 4.125 12 C -0.109 4.109 13 C -0.107 4.107 14 H 0.060 0.940 15 C 0.130 3.870 16 N -0.604 5.604 17 C -0.255 4.255 18 H 0.084 0.916 19 C 0.024 3.976 20 N -0.915 5.915 21 Si 0.889 3.111 22 H -0.289 1.289 23 H -0.305 1.305 24 H -0.266 1.266 25 C 0.152 3.848 26 C -0.142 4.142 27 C 0.153 3.847 28 H 0.096 0.904 29 N -0.441 5.441 30 C 0.119 3.881 31 H 0.228 0.772 32 H 0.146 0.854 33 H 0.154 0.846 34 H 0.057 0.943 35 H 0.136 0.864 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.025 0.975 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.782 3.047 10.761 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.157 4.157 3 C -0.025 4.025 4 C -0.083 4.083 5 C -0.131 4.131 6 C -0.041 4.041 7 C 0.350 3.650 8 O -0.415 6.415 9 N -0.309 5.309 10 C -0.051 4.051 11 C -0.163 4.163 12 C -0.147 4.147 13 C -0.128 4.128 14 H 0.079 0.921 15 C 0.004 3.996 16 N -0.328 5.328 17 C -0.384 4.384 18 H 0.102 0.898 19 C -0.175 4.175 20 N -0.559 5.559 21 Si 0.721 3.279 22 H -0.217 1.217 23 H -0.234 1.234 24 H -0.191 1.191 25 C 0.025 3.975 26 C -0.182 4.182 27 C 0.051 3.949 28 H 0.114 0.886 29 N -0.152 5.152 30 C -0.040 4.040 31 H 0.244 0.756 32 H 0.164 0.836 33 H 0.172 0.828 34 H 0.076 0.924 35 H 0.152 0.848 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.043 0.957 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -24.781 2.702 10.433 27.023 hybrid contribution -0.524 -0.742 1.117 1.440 sum -25.305 1.960 11.550 27.886 Atomic orbital electron populations 1.24976 0.95763 0.98096 0.98276 1.19664 0.91564 1.02186 1.02251 1.17119 0.88024 1.01635 0.95769 1.21680 0.93473 0.95447 0.97668 1.22045 0.94450 0.97755 0.98888 1.21469 0.94796 0.97523 0.90354 1.17833 0.85436 0.77706 0.83998 1.90794 1.65891 1.51149 1.33623 1.48297 1.08286 1.68319 1.06012 1.22748 1.00216 0.98066 0.84076 1.21831 0.97296 0.98667 0.98541 1.21508 0.93056 1.03524 0.96563 1.21826 0.98573 0.96800 0.95619 0.92144 1.21376 0.89734 0.89868 0.98665 1.44298 1.56832 1.03472 1.28174 1.18879 1.16583 1.02784 1.00142 0.89800 1.25382 0.96703 0.98661 0.96733 1.69752 1.34613 1.32439 1.19065 0.86896 0.75824 0.82760 0.82451 1.21724 1.23391 1.19074 1.20885 0.91241 0.91284 0.94083 1.22398 0.99121 0.95694 1.00997 1.21402 0.77330 0.96084 1.00052 0.88646 1.67613 1.07588 1.13532 1.26437 1.23135 0.89363 0.94413 0.97127 0.75579 0.83621 0.82846 0.92427 0.84788 0.91353 0.92095 0.90257 0.92020 0.90858 0.95223 0.92805 0.95708 0.91461 0.92618 0.91146 0.81431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 19.25 29.55 0.57 -0.25 16 2 C -0.16 -1.15 13.28 -38.84 -0.52 -1.67 16 3 C -0.02 -0.19 5.75 -106.69 -0.61 -0.80 16 4 C -0.06 -0.45 9.89 -38.93 -0.39 -0.83 16 5 C -0.11 -1.09 9.60 -39.12 -0.38 -1.46 16 6 C 0.10 1.17 6.44 -82.97 -0.53 0.63 16 7 C 0.56 8.66 7.60 -12.26 -0.09 8.56 16 8 O -0.54 -9.64 15.99 5.33 0.09 -9.55 16 9 N -0.58 -8.83 2.65 -166.07 -0.44 -9.27 16 10 C 0.07 0.94 5.63 -3.82 -0.02 0.92 16 11 C -0.13 -1.71 6.08 -26.60 -0.16 -1.87 16 12 C -0.11 -1.86 4.86 -26.74 -0.13 -1.99 16 13 C -0.11 -1.95 2.45 -90.72 -0.22 -2.18 16 14 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 15 C 0.13 2.83 3.52 -3.95 -0.01 2.82 16 16 N -0.60 -14.08 2.40 -172.62 -0.41 -14.50 16 17 C -0.26 -7.00 10.08 -15.06 -0.15 -7.16 16 18 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 19 C 0.02 0.69 5.37 -17.43 -0.09 0.60 16 20 N -0.92 -28.02 13.97 55.49 0.78 -27.24 16 21 Si 0.89 22.65 24.29 -169.99 -4.13 18.52 16 22 H -0.29 -7.15 6.72 56.52 0.38 -6.77 16 23 H -0.31 -7.96 7.11 56.52 0.40 -7.56 16 24 H -0.27 -6.62 6.01 56.52 0.34 -6.28 16 25 C 0.15 3.00 6.51 -3.74 -0.02 2.98 16 26 C -0.14 -2.42 5.02 -26.60 -0.13 -2.55 16 27 C 0.15 2.63 2.64 -67.32 -0.18 2.46 16 28 H 0.10 1.79 7.08 -51.93 -0.37 1.42 16 29 N -0.44 -4.83 6.44 -9.49 -0.06 -4.89 16 30 C 0.12 1.02 10.92 -17.15 -0.19 0.84 16 31 H 0.23 0.34 7.80 -54.09 -0.42 -0.09 16 32 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.15 1.40 7.78 -52.49 -0.41 0.99 16 34 H 0.06 0.76 7.25 -51.93 -0.38 0.38 16 35 H 0.14 1.61 3.86 -80.26 -0.31 1.30 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.49 6.15 -51.93 -0.32 1.18 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.74 4.54 -51.93 -0.24 1.51 16 41 H 0.03 0.66 6.61 -51.93 -0.34 0.32 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 1.32 7.94 -51.93 -0.41 0.90 16 45 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 46 H 0.07 1.21 5.33 -51.93 -0.28 0.94 16 47 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 366.16 15.07 5.52 5.52 Total: -1.00 -32.74 366.16 -8.43 -41.17 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.50 Total: 1.21 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -3.27 Total: -0.97 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.14 Total: -55.90 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.13 Total: 18.52 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.74 -8.43 -41.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021716635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.040 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds