Wall clock time and date at job start Sat Apr 11 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39985 * 120.46222 * 250.89191 * 3 2 1 5 5 C 1.38218 * 118.37001 * 179.97438 * 4 3 2 6 6 C 1.39489 * 119.20466 * 359.97438 * 5 4 3 7 7 C 1.47997 * 119.57028 * 179.97438 * 6 5 4 8 8 O 1.21542 * 119.99634 * 21.72677 * 7 6 5 9 9 N 1.34771 * 120.00126 * 201.73165 * 7 6 5 10 10 C 1.46768 * 120.76121 * 5.91645 * 9 7 6 11 11 C 1.53138 * 109.06246 * 234.03055 * 10 9 7 12 12 C 1.53117 * 109.47970 * 306.01331 * 11 10 9 13 13 C 1.52863 * 109.34254 * 60.65213 * 12 11 10 14 14 H 1.08996 * 108.59701 * 57.11835 * 13 12 11 15 15 C 1.52773 * 110.20447 * 176.76378 * 13 12 11 16 16 N 1.46889 * 109.23795 * 67.36231 * 15 13 12 17 17 C 1.36940 * 120.77353 * 233.29571 * 16 15 13 18 18 H 1.07999 * 119.99705 * 147.50726 * 17 16 15 19 19 C 1.38813 * 120.00144 * 327.51675 * 17 16 15 20 20 N 1.31617 * 120.00083 * 169.00467 * 19 17 16 21 21 Si 1.86802 * 119.99934 * 348.98935 * 19 17 16 22 22 H 1.48501 * 109.46686 * 92.00212 * 21 19 17 23 23 H 1.48496 * 109.47497 * 212.00061 * 21 19 17 24 24 H 1.48504 * 109.47119 * 332.00463 * 21 19 17 25 25 C 1.46976 * 118.45262 * 53.31780 * 16 15 13 26 26 C 1.53090 * 108.61997 * 305.68892 * 25 16 15 27 27 C 1.47309 * 120.84403 * 186.04208 * 9 7 6 28 28 H 1.08997 * 110.07204 * 4.19190 * 27 9 7 29 29 N 1.32819 * 120.86323 * 0.26289 * 6 5 4 30 30 C 1.31302 * 121.78539 * 359.46662 * 29 6 5 31 31 H 4.52940 * 13.94732 * 0.02562 * 4 2 1 32 32 H 1.07999 * 120.81669 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.39902 * 179.97438 * 5 4 3 34 34 H 1.08991 * 109.45901 * 114.19360 * 10 9 7 35 35 H 1.09000 * 109.66538 * 353.98893 * 10 9 7 36 36 H 1.08997 * 109.46844 * 186.01562 * 11 10 9 37 37 H 1.09003 * 109.47340 * 66.01476 * 11 10 9 38 38 H 1.09004 * 109.49657 * 300.69285 * 12 11 10 39 39 H 1.08999 * 109.49614 * 180.61607 * 12 11 10 40 40 H 1.09004 * 109.51974 * 307.41716 * 15 13 12 41 41 H 1.09001 * 109.51393 * 187.30431 * 15 13 12 42 42 H 0.97001 * 120.00013 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.60602 * 65.42849 * 25 16 15 44 44 H 1.08998 * 109.61115 * 185.77152 * 25 16 15 45 45 H 1.09007 * 109.44640 * 175.37225 * 26 25 16 46 46 H 1.08996 * 109.45337 * 295.29958 * 26 25 16 47 47 H 1.08001 * 119.65084 * 180.25337 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3155 0.3959 1.1401 5 6 4.6968 0.3795 1.0926 6 6 5.3327 -0.0276 -0.0802 7 6 6.8113 -0.0478 -0.1402 8 8 7.4603 -0.1035 0.8859 9 7 7.4380 -0.0042 -1.3325 10 6 6.6787 0.1930 -2.5729 11 6 7.0170 -0.9356 -3.5512 12 6 8.5346 -1.0098 -3.7402 13 6 9.1987 -1.3018 -2.3946 14 1 8.7852 -2.2285 -1.9968 15 6 10.7076 -1.4596 -2.5741 16 7 11.2872 -0.1657 -2.9585 17 6 12.0720 -0.0535 -4.0751 18 1 12.0670 0.8614 -4.6489 19 6 12.8738 -1.1158 -4.4694 20 7 13.4588 -1.0966 -5.6483 21 14 13.1229 -2.5725 -3.3268 22 1 12.1035 -3.6117 -3.6204 23 1 14.4802 -3.1381 -3.5343 24 1 12.9828 -2.1258 -1.9175 25 6 11.0054 1.0056 -2.1166 26 6 9.4883 1.1484 -1.9696 27 6 8.9005 -0.1560 -1.4230 28 1 9.3160 -0.3699 -0.4383 29 7 4.6285 -0.3921 -1.1458 30 6 3.3155 -0.3952 -1.1392 31 1 -1.0500 -0.0006 -0.0001 32 1 2.7964 0.7054 2.0352 33 1 5.2768 0.6784 1.9533 34 1 6.9484 1.1520 -3.0151 35 1 5.6107 0.1791 -2.3554 36 1 6.5406 -0.7388 -4.5116 37 1 6.6538 -1.8829 -3.1527 38 1 8.9000 -0.0585 -4.1271 39 1 8.7750 -1.8058 -4.4448 40 1 10.9068 -2.1941 -3.3545 41 1 11.1528 -1.7940 -1.6371 42 1 14.0194 -1.8387 -5.9237 43 1 11.4568 0.8669 -1.1342 44 1 11.4161 1.9000 -2.5849 45 1 9.2655 1.9635 -1.2810 46 1 9.0481 1.3653 -2.9429 47 1 2.7775 -0.7020 -2.0239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021716635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:38 Heat of formation + Delta-G solvation = 83.711925 kcal Electronic energy + Delta-G solvation = -29843.603467 eV Core-core repulsion = 25993.465718 eV Total energy + Delta-G solvation = -3850.137750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.19943 -40.98109 -39.42514 -37.30168 -35.48949 -34.36089 -34.04304 -33.35336 -32.43857 -31.63630 -31.35149 -27.38290 -27.04760 -25.59316 -24.75625 -24.18836 -23.62250 -22.85270 -21.48914 -20.15042 -19.62819 -18.63864 -18.52700 -17.98544 -17.35722 -17.01536 -16.57812 -16.29729 -16.14218 -15.90656 -15.62094 -15.45601 -15.26505 -15.14916 -14.53685 -14.48542 -14.36613 -14.11468 -14.01821 -13.79815 -13.47915 -13.42258 -13.17021 -12.68545 -12.67010 -12.40493 -12.19825 -12.05780 -11.90388 -11.88298 -11.69422 -11.52493 -11.33918 -11.31470 -11.07531 -10.89811 -10.77259 -10.11048 -9.92502 -9.55221 -8.85510 -8.14736 -5.54808 -0.76379 0.08989 1.28047 1.34231 1.39748 1.47413 1.71899 1.82313 2.13486 2.40358 2.81801 2.95503 3.11312 3.24975 3.28084 3.49454 3.69589 3.76241 3.83398 3.91767 3.97712 4.07663 4.13544 4.19092 4.27517 4.37503 4.54181 4.58630 4.63113 4.66662 4.71999 4.75083 4.83224 4.84527 4.91240 4.92605 5.03647 5.07879 5.10359 5.13902 5.15988 5.30143 5.33920 5.44233 5.59835 5.68568 5.91152 6.15167 6.32846 6.48933 6.58818 6.91127 6.98509 7.60356 8.04449 9.04927 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025816 B = 0.002781 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.352791 B =10066.485249 C =10417.928919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.208 4.208 3 C -0.012 4.012 4 C -0.053 4.053 5 C -0.109 4.109 6 C 0.069 3.931 7 C 0.563 3.437 8 O -0.572 6.572 9 N -0.581 5.581 10 C 0.073 3.927 11 C -0.114 4.114 12 C -0.105 4.105 13 C -0.101 4.101 14 H 0.067 0.933 15 C 0.128 3.872 16 N -0.613 5.613 17 C -0.236 4.236 18 H 0.055 0.945 19 C -0.032 4.032 20 N -0.961 5.961 21 Si 0.946 3.054 22 H -0.279 1.279 23 H -0.313 1.313 24 H -0.257 1.257 25 C 0.148 3.852 26 C -0.128 4.128 27 C 0.159 3.841 28 H 0.081 0.919 29 N -0.453 5.453 30 C 0.116 3.884 31 H 0.262 0.738 32 H 0.173 0.827 33 H 0.155 0.845 34 H 0.059 0.941 35 H 0.155 0.845 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.029 0.971 42 H 0.261 0.739 43 H 0.032 0.968 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.165 3.050 12.285 32.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.209 4.209 3 C -0.014 4.014 4 C -0.078 4.078 5 C -0.130 4.130 6 C -0.067 4.067 7 C 0.351 3.649 8 O -0.451 6.451 9 N -0.310 5.310 10 C -0.049 4.049 11 C -0.152 4.152 12 C -0.142 4.142 13 C -0.122 4.122 14 H 0.086 0.914 15 C 0.002 3.998 16 N -0.338 5.338 17 C -0.366 4.366 18 H 0.072 0.928 19 C -0.226 4.226 20 N -0.607 5.607 21 Si 0.776 3.224 22 H -0.206 1.206 23 H -0.243 1.243 24 H -0.182 1.182 25 C 0.022 3.978 26 C -0.167 4.167 27 C 0.056 3.944 28 H 0.099 0.901 29 N -0.164 5.164 30 C -0.044 4.044 31 H 0.278 0.722 32 H 0.190 0.810 33 H 0.172 0.828 34 H 0.077 0.923 35 H 0.171 0.829 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.050 0.950 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -29.209 2.719 11.985 31.689 hybrid contribution 0.596 -0.664 0.673 1.117 sum -28.613 2.056 12.658 31.355 Atomic orbital electron populations 1.25885 0.96472 0.95000 0.95673 1.19791 0.91823 1.04605 1.04640 1.17282 0.88928 0.99786 0.95421 1.21954 0.92543 0.94639 0.98671 1.22099 0.95401 0.97360 0.98096 1.21021 0.92969 1.00729 0.91975 1.18301 0.86907 0.76492 0.83234 1.90761 1.67112 1.52635 1.34641 1.48265 1.07286 1.68502 1.06967 1.22922 1.01139 0.97806 0.83020 1.21760 0.94436 0.99136 0.99907 1.21438 0.95657 1.01813 0.95325 1.21691 0.95910 0.97789 0.96775 0.91422 1.21346 0.92267 0.88576 0.97603 1.44363 1.56653 1.05075 1.27709 1.18780 1.16010 1.01296 1.00514 0.92753 1.25960 0.97231 1.01507 0.97910 1.69879 1.36384 1.33591 1.20870 0.85971 0.75281 0.80186 0.80969 1.20599 1.24261 1.18187 1.21025 0.93354 0.89825 0.93556 1.22209 0.96750 0.96342 1.01417 1.21114 0.79128 0.95444 0.98740 0.90127 1.67377 1.08737 1.14004 1.26280 1.23521 0.88516 0.94028 0.98285 0.72156 0.80983 0.82752 0.92266 0.82930 0.89160 0.91763 0.92231 0.93369 0.92842 0.95362 0.93037 0.95047 0.91648 0.90885 0.91200 0.79042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 19.25 74.32 1.43 0.73 16 2 C -0.21 -2.33 13.28 30.01 0.40 -1.93 16 3 C -0.01 -0.16 5.75 -21.20 -0.12 -0.29 16 4 C -0.05 -0.69 9.89 22.69 0.22 -0.47 16 5 C -0.11 -1.98 9.60 22.57 0.22 -1.76 16 6 C 0.07 1.59 6.44 41.89 0.27 1.86 16 7 C 0.56 16.91 7.60 86.83 0.66 17.57 16 8 O -0.57 -20.53 15.99 -3.85 -0.06 -20.59 16 9 N -0.58 -17.14 2.65 -797.60 -2.12 -19.26 16 10 C 0.07 1.79 5.63 86.37 0.49 2.28 16 11 C -0.11 -2.92 6.08 30.68 0.19 -2.73 16 12 C -0.10 -3.54 4.86 30.59 0.15 -3.39 16 13 C -0.10 -3.64 2.45 -10.86 -0.03 -3.67 16 14 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 15 C 0.13 5.59 3.52 86.23 0.30 5.90 16 16 N -0.61 -28.97 2.40 -700.06 -1.68 -30.65 16 17 C -0.24 -13.34 10.08 84.03 0.85 -12.49 16 18 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 19 C -0.03 -1.86 5.37 84.86 0.46 -1.40 16 20 N -0.96 -60.80 13.97 21.65 0.30 -60.50 16 21 Si 0.95 47.85 24.29 68.60 1.67 49.52 16 22 H -0.28 -13.49 6.72 99.48 0.67 -12.82 16 23 H -0.31 -16.15 7.11 99.48 0.71 -15.44 16 24 H -0.26 -12.51 6.01 99.48 0.60 -11.91 16 25 C 0.15 5.85 6.51 86.32 0.56 6.42 16 26 C -0.13 -4.27 5.02 30.68 0.15 -4.11 16 27 C 0.16 5.38 2.64 44.94 0.12 5.50 16 28 H 0.08 3.01 7.08 -2.39 -0.02 2.99 16 29 N -0.45 -9.00 6.44 -183.93 -1.18 -10.19 16 30 C 0.12 1.69 10.92 85.18 0.93 2.62 16 31 H 0.26 -0.68 7.80 -4.42 -0.03 -0.72 16 32 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 33 H 0.15 2.69 7.78 -2.91 -0.02 2.66 16 34 H 0.06 1.45 7.25 -2.39 -0.02 1.44 16 35 H 0.15 3.32 3.86 -58.32 -0.22 3.09 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 2.25 6.15 -2.39 -0.01 2.23 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 40 H 0.05 2.56 4.54 -2.38 -0.01 2.54 16 41 H 0.03 1.25 6.61 -2.39 -0.02 1.24 16 42 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 2.58 7.94 -2.39 -0.02 2.56 16 45 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 46 H 0.07 2.36 5.33 -2.39 -0.01 2.35 16 47 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -73.44 366.16 4.80 -68.64 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.63 Total: 12.42 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 7.24 Total: 10.62 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -4.68 Total: -120.60 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.06 Total: -20.59 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.67 Total: 49.52 kcal Total: -73.44 4.80 -68.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021716635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.353 kcal (2) G-P(sol) polarization free energy of solvation -73.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds