Wall clock time and date at job start Sat Apr 11 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39637 * 120.49315 * 276.88337 * 3 2 1 5 5 N 1.31746 * 120.88359 * 180.02562 * 4 3 2 6 6 C 1.31733 * 122.04225 * 359.76823 * 5 4 3 7 7 C 1.39610 * 120.87579 * 0.49943 * 6 5 4 8 8 C 1.47853 * 120.49012 * 179.77227 * 7 6 5 9 9 O 1.21553 * 119.99583 * 214.02100 * 8 7 6 10 10 N 1.34774 * 120.00228 * 34.01943 * 8 7 6 11 11 C 1.46940 * 120.54905 * 185.15067 * 10 8 7 12 12 C 1.53344 * 108.68251 * 125.63300 * 11 10 8 13 13 C 1.52107 * 109.44308 * 53.29903 * 12 11 10 14 14 C 1.54394 * 110.50619 * 64.09535 * 13 12 11 15 15 C 1.54454 * 102.87452 * 83.32794 * 14 13 12 16 16 N 1.47086 * 107.29422 * 21.50325 * 15 14 13 17 17 C 1.36941 * 125.62693 * 180.96484 * 16 15 14 18 18 H 1.07996 * 119.99834 * 176.46125 * 17 16 15 19 19 C 1.38815 * 119.99638 * 356.46360 * 17 16 15 20 20 N 1.31617 * 119.99552 * 159.33754 * 19 17 16 21 21 Si 1.86803 * 120.00197 * 339.33451 * 19 17 16 22 22 H 1.48502 * 109.46940 * 185.47957 * 21 19 17 23 23 H 1.48500 * 109.46884 * 305.47732 * 21 19 17 24 24 H 1.48499 * 109.47069 * 65.47829 * 21 19 17 25 25 C 1.47571 * 108.74243 * 1.23264 * 16 15 14 26 26 C 1.52101 * 111.60297 * 300.69656 * 13 12 11 27 27 C 1.46928 * 120.55434 * 5.13221 * 10 8 7 28 28 C 1.39676 * 120.48580 * 96.90868 * 3 2 1 29 29 H 4.52739 * 13.92873 * 0.02562 * 4 2 1 30 30 H 1.08007 * 119.55457 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.56583 * 180.26960 * 6 5 4 32 32 H 1.09001 * 109.60477 * 5.87263 * 11 10 8 33 33 H 1.09001 * 109.60121 * 245.38484 * 11 10 8 34 34 H 1.09001 * 109.47283 * 293.31137 * 12 11 10 35 35 H 1.09000 * 109.47611 * 173.29394 * 12 11 10 36 36 H 1.09002 * 110.73335 * 324.97744 * 14 13 12 37 37 H 1.09000 * 110.73164 * 201.67537 * 14 13 12 38 38 H 1.09001 * 109.87804 * 262.08005 * 15 14 13 39 39 H 1.09001 * 109.87934 * 140.92521 * 15 14 13 40 40 H 0.97004 * 120.00330 * 5.01048 * 20 19 17 41 41 H 1.09004 * 110.37705 * 95.26107 * 25 16 15 42 42 H 1.09004 * 110.37664 * 217.60283 * 25 16 15 43 43 H 1.09003 * 109.47547 * 179.29592 * 26 13 12 44 44 H 1.09003 * 109.46940 * 299.30830 * 26 13 12 45 45 H 1.09004 * 109.60117 * 354.12735 * 27 10 8 46 46 H 1.08994 * 109.60291 * 114.60089 * 27 10 8 47 47 H 1.07995 * 120.92211 * 359.94989 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3147 -0.1432 1.1946 5 7 4.6321 -0.1432 1.2035 6 6 5.3385 -0.0136 0.0992 7 6 4.7114 0.1410 -1.1385 8 6 5.5127 0.2908 -2.3720 9 8 5.1105 0.9970 -3.2759 10 7 6.6889 -0.3556 -2.4942 11 6 7.5481 -0.1283 -3.6643 12 6 8.9438 0.2793 -3.1772 13 6 9.4560 -0.7545 -2.1860 14 6 9.6402 -2.1224 -2.8778 15 6 11.0343 -1.9932 -3.5300 16 7 11.7560 -0.9312 -2.8126 17 6 13.0227 -0.4952 -3.0967 18 1 13.4452 0.3322 -2.5461 19 6 13.7636 -1.1170 -4.0925 20 7 14.7761 -0.4871 -4.6496 21 14 13.3236 -2.8474 -4.6416 22 1 14.3378 -3.3315 -5.6123 23 1 13.2973 -3.7493 -3.4621 24 1 11.9862 -2.8370 -5.2867 25 6 10.8922 -0.4174 -1.7321 26 6 8.5318 -0.8848 -0.9850 27 6 7.1338 -1.2991 -1.4593 28 6 3.3146 0.1457 -1.1949 29 1 -1.0500 -0.0005 0.0002 30 1 2.7755 -0.2561 2.1236 31 1 6.4171 -0.0234 0.1524 32 1 7.1275 0.6688 -4.2775 33 1 7.6185 -1.0450 -4.2499 34 1 8.8888 1.2532 -2.6908 35 1 9.6234 0.3355 -4.0276 36 1 8.8725 -2.2780 -3.6358 37 1 9.6301 -2.9296 -2.1455 38 1 10.9284 -1.7246 -4.5811 39 1 11.5749 -2.9354 -3.4388 40 1 15.0503 0.3813 -4.3155 41 1 11.1228 -0.9177 -0.7915 42 1 11.0139 0.6609 -1.6291 43 1 8.9239 -1.6412 -0.3051 44 1 8.4712 0.0727 -0.4676 45 1 6.4401 -1.2738 -0.6189 46 1 7.1719 -2.3061 -1.8746 47 1 2.7977 0.2588 -2.1364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035223538.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:54 Heat of formation + Delta-G solvation = 112.620391 kcal Electronic energy + Delta-G solvation = -29348.953971 eV Core-core repulsion = 25500.069786 eV Total energy + Delta-G solvation = -3848.884185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43498 -40.06254 -38.74264 -36.25611 -34.86458 -33.42415 -32.83155 -31.71036 -31.33419 -30.47880 -29.08340 -27.45711 -25.21718 -24.78901 -23.75129 -23.10050 -22.92730 -21.02087 -20.33641 -19.45808 -18.25048 -17.77809 -17.57195 -17.04248 -16.80957 -16.19932 -15.50085 -15.36378 -15.20317 -14.90127 -14.66002 -14.09150 -13.97595 -13.72195 -13.66062 -13.45772 -13.27956 -13.09646 -12.78210 -12.47345 -12.33119 -12.06853 -11.84732 -11.45577 -11.32241 -11.29329 -11.21647 -10.95701 -10.66836 -10.43522 -10.36910 -10.27224 -10.22728 -9.92819 -9.78848 -9.47268 -9.23216 -8.94029 -8.77211 -8.55478 -7.05142 -6.30115 -3.16659 0.03449 0.47121 2.15573 2.25000 2.63294 2.74522 3.40366 3.42853 3.49600 3.60223 3.70423 3.88018 4.09435 4.26111 4.30921 4.57532 4.61536 4.65400 4.72179 4.81851 4.90461 4.98264 5.07805 5.18391 5.23500 5.31411 5.35356 5.45296 5.50254 5.52246 5.59402 5.64035 5.71166 5.77833 5.86780 5.90922 5.96478 6.01113 6.18118 6.27271 6.30854 6.41167 6.47910 6.62051 6.73904 6.78790 6.95339 7.12790 7.30009 7.67499 7.84286 8.34352 9.06436 9.59846 10.25899 11.20528 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029062 B = 0.002458 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.236357 B =11390.456936 C =11636.501992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.154 4.154 3 C -0.045 4.045 4 C 0.143 3.857 5 N -0.479 5.479 6 C 0.130 3.870 7 C -0.177 4.177 8 C 0.564 3.436 9 O -0.533 6.533 10 N -0.597 5.597 11 C 0.112 3.888 12 C -0.112 4.112 13 C -0.071 4.071 14 C -0.123 4.123 15 C 0.112 3.888 16 N -0.611 5.611 17 C -0.324 4.324 18 H 0.077 0.923 19 C -0.026 4.026 20 N -0.927 5.927 21 Si 1.070 2.930 22 H -0.303 1.303 23 H -0.300 1.300 24 H -0.282 1.282 25 C 0.148 3.852 26 C -0.120 4.120 27 C 0.081 3.919 28 C 0.000 4.000 29 H 0.228 0.772 30 H 0.166 0.834 31 H 0.180 0.820 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.026 0.974 40 H 0.261 0.739 41 H 0.023 0.977 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.077 0.923 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.132 -1.950 10.721 29.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.155 4.155 3 C -0.047 4.047 4 C -0.014 4.014 5 N -0.186 5.186 6 C -0.027 4.027 7 C -0.182 4.182 8 C 0.351 3.649 9 O -0.411 6.411 10 N -0.329 5.329 11 C -0.009 4.009 12 C -0.150 4.150 13 C -0.072 4.072 14 C -0.161 4.161 15 C -0.012 4.012 16 N -0.339 5.339 17 C -0.451 4.451 18 H 0.095 0.905 19 C -0.225 4.225 20 N -0.569 5.569 21 Si 0.905 3.095 22 H -0.231 1.231 23 H -0.229 1.229 24 H -0.210 1.210 25 C 0.022 3.978 26 C -0.159 4.159 27 C -0.042 4.042 28 C -0.026 4.026 29 H 0.245 0.755 30 H 0.183 0.817 31 H 0.196 0.804 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.062 0.938 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -26.363 -2.809 9.907 28.303 hybrid contribution -0.820 1.169 0.493 1.510 sum -27.183 -1.640 10.400 29.151 Atomic orbital electron populations 1.24955 0.95738 0.98442 0.98061 1.19561 0.91439 1.02076 1.02428 1.16826 0.88207 1.05110 0.94606 1.23181 0.89724 0.91427 0.97079 1.67817 1.07564 1.13209 1.30041 1.23597 1.01315 0.91101 0.86655 1.20932 0.94684 1.06911 0.95680 1.17980 0.80899 0.80010 0.86046 1.90799 1.70024 1.39576 1.40698 1.48008 1.19000 1.42640 1.23290 1.21834 0.89950 1.02399 0.86752 1.21666 0.94826 0.98177 1.00376 1.21091 0.95830 0.95687 0.94591 1.22672 0.97622 0.96270 0.99550 1.21997 0.90950 0.91863 0.96428 1.44868 1.14014 1.41190 1.33782 1.20101 0.89758 1.14650 1.20570 0.90501 1.25752 0.96814 1.04789 0.95158 1.70927 1.31565 1.16643 1.37717 0.83861 0.74461 0.75881 0.75334 1.23090 1.22924 1.20967 1.21520 0.87346 0.97571 0.91366 1.21781 0.93672 1.02451 0.97978 1.22510 0.96929 0.93174 0.91562 1.21742 0.92163 0.90254 0.98449 0.75544 0.81652 0.80357 0.88881 0.90831 0.91673 0.89188 0.91317 0.91507 0.93568 0.95716 0.92918 0.95959 0.93811 0.89916 0.91267 0.88438 0.90459 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 19.25 29.55 0.57 -0.34 16 2 C -0.15 -1.23 13.27 -38.83 -0.52 -1.75 16 3 C -0.05 -0.39 5.73 -106.91 -0.61 -1.01 16 4 C 0.14 1.16 10.91 -17.07 -0.19 0.98 16 5 N -0.48 -4.52 10.33 -12.59 -0.13 -4.65 16 6 C 0.13 1.20 8.58 -17.08 -0.15 1.06 16 7 C -0.18 -1.83 5.45 -104.87 -0.57 -2.40 16 8 C 0.56 7.02 7.42 -12.33 -0.09 6.93 16 9 O -0.53 -8.39 16.28 5.32 0.09 -8.31 16 10 N -0.60 -6.76 2.96 -173.68 -0.51 -7.28 16 11 C 0.11 1.40 6.11 -3.62 -0.02 1.37 16 12 C -0.11 -1.59 4.87 -27.01 -0.13 -1.72 16 13 C -0.07 -1.00 0.55 -153.99 -0.08 -1.09 16 14 C -0.12 -1.85 4.92 -25.24 -0.12 -1.98 16 15 C 0.11 2.33 4.20 -2.96 -0.01 2.32 16 16 N -0.61 -14.36 3.35 -170.17 -0.57 -14.93 16 17 C -0.32 -9.13 10.53 -15.06 -0.16 -9.29 16 18 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 19 C -0.03 -0.75 5.49 -17.43 -0.10 -0.85 16 20 N -0.93 -29.11 13.70 55.49 0.76 -28.35 16 21 Si 1.07 26.63 24.57 -169.99 -4.18 22.45 16 22 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 23 H -0.30 -7.25 6.92 56.52 0.39 -6.85 16 24 H -0.28 -6.35 5.21 56.52 0.29 -6.05 16 25 C 0.15 2.76 6.16 -2.75 -0.02 2.74 16 26 C -0.12 -1.26 4.51 -27.02 -0.12 -1.38 16 27 C 0.08 0.74 5.27 -3.64 -0.02 0.72 16 28 C 0.00 0.00 9.47 -38.46 -0.36 -0.37 16 29 H 0.23 0.43 7.80 -54.09 -0.42 0.01 16 30 H 0.17 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.18 1.44 4.98 -52.49 -0.26 1.18 16 32 H 0.09 1.24 7.02 -51.93 -0.36 0.88 16 33 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.50 7.82 -51.93 -0.41 1.10 16 36 H 0.07 0.91 6.17 -51.93 -0.32 0.59 16 37 H 0.07 0.91 7.98 -51.93 -0.41 0.49 16 38 H 0.05 1.02 6.43 -51.93 -0.33 0.68 16 39 H 0.03 0.56 4.31 -51.93 -0.22 0.33 16 40 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 41 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16 42 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 43 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 44 H 0.07 0.69 7.61 -51.93 -0.39 0.29 16 45 H 0.10 0.77 3.49 -51.93 -0.18 0.58 16 46 H 0.08 0.68 7.62 -51.93 -0.40 0.28 16 47 H 0.15 1.38 8.04 -52.49 -0.42 0.96 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -34.51 366.04 -8.00 -42.51 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -6.27 Total: -0.93 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.71 Total: -6.04 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.45 Total: -55.20 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 14 Polarization: 26.63 SS G_CDS: -4.18 Total: 22.45 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.51 -8.00 -42.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035223538.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.135 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds