Wall clock time and date at job start Sat Apr 11 2020 05:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39733 * 119.59202 * 356.74243 * 3 2 1 5 5 C 1.37963 * 119.19968 * 179.97438 * 4 3 2 6 6 C 1.40234 * 118.40483 * 359.97438 * 5 4 3 7 7 C 1.47678 * 120.44696 * 180.02562 * 6 5 4 8 8 O 1.21579 * 119.99577 * 34.33329 * 7 6 5 9 9 N 1.34771 * 120.00071 * 214.34180 * 7 6 5 10 10 C 1.46941 * 120.55076 * 185.14392 * 9 7 6 11 11 C 1.53341 * 108.68375 * 125.66614 * 10 9 7 12 12 C 1.52110 * 109.44488 * 53.30695 * 11 10 9 13 13 C 1.54390 * 110.50916 * 64.08614 * 12 11 10 14 14 C 1.54456 * 102.87108 * 83.33078 * 13 12 11 15 15 N 1.47081 * 107.29556 * 21.51009 * 14 13 12 16 16 C 1.36936 * 125.62976 * 180.96627 * 15 14 13 17 17 H 1.08001 * 120.00016 * 176.45552 * 16 15 14 18 18 C 1.38813 * 119.99814 * 356.45398 * 16 15 14 19 19 N 1.31620 * 119.99799 * 159.33975 * 18 16 15 20 20 Si 1.86801 * 119.99889 * 339.33906 * 18 16 15 21 21 H 1.48504 * 109.47042 * 185.47620 * 20 18 16 22 22 H 1.48502 * 109.47200 * 305.47466 * 20 18 16 23 23 H 1.48493 * 109.47426 * 65.47688 * 20 18 16 24 24 C 1.47575 * 108.73978 * 1.22636 * 15 14 13 25 25 C 1.52107 * 111.59735 * 300.69419 * 12 11 10 26 26 C 1.46926 * 120.55736 * 5.16088 * 9 7 6 27 27 C 1.39664 * 119.11872 * 0.27443 * 6 5 4 28 28 N 1.31481 * 120.70530 * 359.43043 * 27 6 5 29 29 H 4.51266 * 14.17716 * 359.97438 * 4 2 1 30 30 H 1.07999 * 120.39343 * 359.95871 * 4 3 2 31 31 H 1.07999 * 120.79847 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.60247 * 5.91097 * 10 9 7 33 33 H 1.08992 * 109.73647 * 245.50680 * 10 9 7 34 34 H 1.08997 * 109.48337 * 293.31420 * 11 10 9 35 35 H 1.09006 * 109.47683 * 173.29521 * 11 10 9 36 36 H 1.09007 * 110.73186 * 324.99032 * 13 12 11 37 37 H 1.09002 * 110.73644 * 201.68059 * 13 12 11 38 38 H 1.08992 * 109.88290 * 262.08148 * 14 13 12 39 39 H 1.09002 * 109.87122 * 140.92690 * 14 13 12 40 40 H 0.96991 * 119.99962 * 5.01642 * 19 18 16 41 41 H 1.09002 * 110.37501 * 95.27028 * 24 15 14 42 42 H 1.09009 * 110.37399 * 217.60790 * 24 15 14 43 43 H 1.09000 * 109.47595 * 179.29204 * 25 12 11 44 44 H 1.09004 * 109.47577 * 299.30312 * 25 12 11 45 45 H 1.09006 * 109.60046 * 354.08885 * 26 9 7 46 46 H 1.08995 * 109.60291 * 114.56550 * 26 9 7 47 47 H 1.07996 * 119.64657 * 179.70211 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2966 -1.2122 0.0690 5 6 4.6762 -1.2021 0.0680 6 6 5.3343 0.0342 -0.0035 7 6 6.8097 0.0974 -0.0082 8 8 7.4538 -0.7779 -0.5533 9 7 7.4421 1.1252 0.5919 10 6 8.9022 1.2606 0.4986 11 6 9.2325 2.6570 -0.0422 12 6 8.5356 3.7075 0.8089 13 6 9.0801 3.6815 2.2534 14 6 10.3569 4.5452 2.1554 15 7 10.2167 5.3995 0.9664 16 6 11.1454 6.3001 0.5172 17 1 10.9727 6.8411 -0.4014 18 6 12.3087 6.5176 1.2426 19 7 13.3628 7.0419 0.6542 20 14 12.3780 6.0662 3.0540 21 1 13.6723 6.5156 3.6269 22 1 11.2612 6.7305 3.7728 23 1 12.2558 4.5938 3.2023 24 6 8.9074 5.1304 0.3409 25 6 7.0262 3.5201 0.8050 26 6 6.6831 2.1287 1.3505 27 6 4.5758 1.2053 -0.0648 28 7 3.2619 1.1549 -0.0672 29 1 -1.0500 -0.0011 0.0006 30 1 2.7568 -2.1460 0.1229 31 1 5.2359 -2.1242 0.1209 32 1 9.2972 0.5034 -0.1787 33 1 9.3472 1.1361 1.4857 34 1 8.8886 2.7382 -1.0734 35 1 10.3103 2.8156 -0.0050 36 1 9.3254 2.6631 2.5551 37 1 8.3643 4.1278 2.9438 38 1 11.2314 3.9033 2.0496 39 1 10.4547 5.1644 3.0472 40 1 13.3048 7.3434 -0.2658 41 1 8.1667 5.8519 0.6858 42 1 8.9921 5.1621 -0.7454 43 1 6.5638 4.2811 1.4337 44 1 6.6510 3.6136 -0.2142 45 1 5.6151 1.9438 1.2349 46 1 6.9542 2.0722 2.4047 47 1 5.0738 2.1622 -0.1151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035246921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:58 Heat of formation + Delta-G solvation = 92.279782 kcal Electronic energy + Delta-G solvation = -29345.988751 eV Core-core repulsion = 25496.222531 eV Total energy + Delta-G solvation = -3849.766220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.26107 -41.01919 -39.85565 -37.50871 -35.26597 -34.80587 -33.70393 -33.15099 -32.74421 -31.28029 -30.62088 -28.80538 -26.43809 -25.53763 -24.80127 -24.17556 -24.12137 -22.35552 -21.38674 -20.47225 -19.92620 -19.18269 -18.42071 -17.99428 -17.14313 -17.11340 -16.94306 -16.76047 -15.91728 -15.82781 -15.56712 -15.46155 -15.12920 -15.04539 -14.77448 -14.61804 -14.35316 -14.27467 -14.07142 -13.59191 -13.44833 -13.14673 -13.01637 -12.84204 -12.57330 -12.34827 -12.18314 -11.90232 -11.88523 -11.74887 -11.61528 -11.57125 -11.33266 -11.15000 -11.06139 -10.83433 -10.63544 -10.57549 -9.96329 -9.66920 -9.09008 -8.63015 -5.40331 -0.76034 0.05444 1.35627 1.40720 1.51241 1.62609 1.72263 1.79533 2.01610 2.55581 2.83119 2.90045 3.10149 3.27735 3.37032 3.50551 3.52568 3.67500 3.69817 3.79464 3.91526 4.02435 4.03375 4.08012 4.22381 4.31148 4.42869 4.48307 4.54845 4.58870 4.66188 4.68401 4.73599 4.76658 4.83658 4.89903 4.92017 5.01830 5.03024 5.07057 5.10000 5.25831 5.33450 5.40080 5.40906 5.50832 5.58992 6.11465 6.24305 6.45332 6.62706 6.86051 6.93588 7.50502 8.14245 8.88982 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024051 B = 0.002530 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.937449 B =11066.344649 C =11555.052428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.216 4.216 3 C 0.235 3.765 4 C -0.143 4.143 5 C -0.018 4.018 6 C -0.188 4.188 7 C 0.565 3.435 8 O -0.572 6.572 9 N -0.595 5.595 10 C 0.121 3.879 11 C -0.107 4.107 12 C -0.057 4.057 13 C -0.111 4.111 14 C 0.101 3.899 15 N -0.632 5.632 16 C -0.309 4.309 17 H 0.042 0.958 18 C -0.088 4.088 19 N -0.965 5.965 20 Si 1.109 2.891 21 H -0.316 1.316 22 H -0.286 1.286 23 H -0.243 1.243 24 C 0.141 3.859 25 C -0.115 4.115 26 C 0.084 3.916 27 C 0.132 3.868 28 N -0.494 5.494 29 H 0.270 0.730 30 H 0.174 0.826 31 H 0.161 0.839 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.031 0.969 39 H 0.022 0.978 40 H 0.244 0.756 41 H 0.033 0.967 42 H 0.027 0.973 43 H 0.102 0.898 44 H 0.074 0.926 45 H 0.115 0.885 46 H 0.095 0.905 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.895 -19.473 3.793 34.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.217 4.217 3 C 0.101 3.899 4 C -0.163 4.163 5 C -0.044 4.044 6 C -0.193 4.193 7 C 0.353 3.647 8 O -0.453 6.453 9 N -0.326 5.326 10 C -0.001 4.001 11 C -0.145 4.145 12 C -0.058 4.058 13 C -0.148 4.148 14 C -0.023 4.023 15 N -0.359 5.359 16 C -0.438 4.438 17 H 0.060 0.940 18 C -0.280 4.280 19 N -0.610 5.610 20 Si 0.937 3.063 21 H -0.246 1.246 22 H -0.213 1.213 23 H -0.168 1.168 24 C 0.016 3.984 25 C -0.153 4.153 26 C -0.038 4.038 27 C -0.027 4.027 28 N -0.202 5.202 29 H 0.286 0.714 30 H 0.192 0.808 31 H 0.179 0.821 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.049 0.951 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.121 0.879 44 H 0.092 0.908 45 H 0.132 0.868 46 H 0.113 0.887 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -26.957 -19.162 4.720 33.409 hybrid contribution 0.308 0.368 -2.039 2.095 sum -26.649 -18.794 2.681 32.719 Atomic orbital electron populations 1.25987 0.96364 0.95097 0.93114 1.19624 0.91590 1.04851 1.05640 1.17122 0.89164 0.89386 0.94273 1.22259 0.93905 0.99482 1.00637 1.21813 0.94169 0.97704 0.90688 1.20994 0.93602 0.96496 1.08247 1.18259 0.87214 0.81288 0.77903 1.90782 1.68066 1.39503 1.46941 1.48041 1.07927 1.25502 1.51088 1.21629 0.79205 0.96694 1.02583 1.21549 1.00462 0.93613 0.98887 1.20981 0.95926 0.93533 0.95335 1.22698 0.95473 1.00248 0.96415 1.22152 0.98822 0.92608 0.88729 1.44941 1.16882 1.44390 1.29706 1.19989 0.99832 1.18765 1.05227 0.94020 1.27100 0.90979 1.00787 1.09119 1.71042 1.28247 1.47433 1.14249 0.83432 0.73472 0.78278 0.71109 1.24593 1.21333 1.16796 1.21749 0.86225 0.94702 0.95705 1.21766 0.93210 0.97214 1.03145 1.22644 0.97926 0.86410 0.96786 1.23511 0.88476 0.98517 0.92180 1.67853 1.09846 1.28999 1.13525 0.71364 0.80841 0.82141 0.90095 0.89483 0.92350 0.92276 0.88668 0.88798 0.95093 0.96092 0.94636 0.94870 0.95489 0.87925 0.90761 0.86750 0.88677 0.79312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 19.25 74.32 1.43 0.68 16 2 C -0.22 -3.31 13.43 30.01 0.40 -2.90 16 3 C 0.23 4.16 6.59 40.58 0.27 4.43 16 4 C -0.14 -1.93 9.77 22.57 0.22 -1.71 16 5 C -0.02 -0.28 9.73 22.69 0.22 -0.06 16 6 C -0.19 -3.53 5.46 -19.95 -0.11 -3.64 16 7 C 0.56 13.09 7.41 86.74 0.64 13.74 16 8 O -0.57 -17.40 16.28 -3.96 -0.06 -17.47 16 9 N -0.59 -12.08 2.96 -821.90 -2.43 -14.51 16 10 C 0.12 2.82 6.11 86.41 0.53 3.34 16 11 C -0.11 -2.96 4.87 30.41 0.15 -2.81 16 12 C -0.06 -1.49 0.55 -51.84 -0.03 -1.52 16 13 C -0.11 -2.92 4.92 31.56 0.16 -2.77 16 14 C 0.10 4.00 4.20 86.76 0.36 4.37 16 15 N -0.63 -29.85 3.35 -692.32 -2.32 -32.17 16 16 C -0.31 -18.14 10.53 84.03 0.88 -17.25 16 17 H 0.04 2.66 8.06 -2.91 -0.02 2.64 16 18 C -0.09 -5.31 5.49 84.86 0.47 -4.85 16 19 N -0.96 -63.46 13.70 21.65 0.30 -63.17 16 20 Si 1.11 54.02 24.56 68.60 1.69 55.71 16 21 H -0.32 -16.03 7.11 99.48 0.71 -15.33 16 22 H -0.29 -13.08 6.92 99.48 0.69 -12.39 16 23 H -0.24 -10.26 5.21 99.48 0.52 -9.75 16 24 C 0.14 5.20 6.16 86.63 0.53 5.73 16 25 C -0.12 -2.04 4.51 30.41 0.14 -1.90 16 26 C 0.08 1.25 5.27 86.41 0.46 1.70 16 27 C 0.13 2.33 8.57 85.09 0.73 3.06 16 28 N -0.49 -9.89 10.26 -188.04 -1.93 -11.82 16 29 H 0.27 -0.40 7.80 -4.42 -0.03 -0.44 16 30 H 0.17 1.27 8.06 -2.91 -0.02 1.24 16 31 H 0.16 2.12 8.04 -2.91 -0.02 2.10 16 32 H 0.08 2.12 7.02 -2.39 -0.02 2.10 16 33 H 0.09 1.81 6.55 -2.39 -0.02 1.80 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 2.01 7.82 -2.38 -0.02 1.99 16 36 H 0.09 2.07 6.18 -2.38 -0.01 2.05 16 37 H 0.09 2.05 7.98 -2.39 -0.02 2.03 16 38 H 0.03 1.32 6.43 -2.39 -0.02 1.31 16 39 H 0.02 0.89 4.32 -2.39 -0.01 0.87 16 40 H 0.24 16.21 8.73 -92.72 -0.81 15.40 16 41 H 0.03 1.18 8.00 -2.39 -0.02 1.16 16 42 H 0.03 1.06 8.04 -2.38 -0.02 1.04 16 43 H 0.10 1.51 8.09 -2.39 -0.02 1.50 16 44 H 0.07 1.29 7.60 -2.38 -0.02 1.27 16 45 H 0.12 1.45 3.49 -2.39 -0.01 1.44 16 46 H 0.10 1.18 7.62 -2.39 -0.02 1.16 16 47 H 0.19 2.77 4.98 -2.91 -0.01 2.76 16 Total: -1.00 -81.62 366.11 3.44 -78.18 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.75 Total: 7.61 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 7.45 Total: -2.36 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -6.38 Total: -121.67 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.06 Total: -17.47 kcal Atomic # 14 Polarization: 54.02 SS G_CDS: 1.69 Total: 55.71 kcal Total: -81.62 3.44 -78.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035246921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.457 kcal (2) G-P(sol) polarization free energy of solvation -81.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds