Wall clock time and date at job start Sat Apr 11 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.08997 * 109.49913 * 305.00198 * 3 2 1 5 5 C 1.53192 * 109.49733 * 65.06580 * 3 2 1 6 6 N 1.46934 * 108.77563 * 174.55337 * 5 3 2 7 7 C 1.34769 * 120.60966 * 126.41620 * 6 5 3 8 8 O 1.21286 * 119.99870 * 0.02770 * 7 6 5 9 9 C 1.50704 * 120.00359 * 180.02562 * 7 6 5 10 10 N 1.46499 * 109.46918 * 180.02562 * 9 7 6 11 11 C 1.36379 * 125.95973 * 269.68167 * 10 9 7 12 12 O 1.35623 * 125.98859 * 0.04730 * 11 10 9 13 13 N 1.30909 * 108.01950 * 179.89103 * 11 10 9 14 14 N 1.40108 * 107.94121 * 0.37799 * 13 11 10 15 15 C 1.30905 * 107.94038 * 359.76185 * 14 13 11 16 16 O 1.35628 * 125.98871 * 179.97438 * 15 14 13 17 17 C 1.46933 * 118.76241 * 306.44563 * 6 5 3 18 18 C 1.53195 * 108.77433 * 53.58215 * 17 6 5 19 19 C 1.53039 * 109.31481 * 305.36634 * 18 17 6 20 20 H 1.08997 * 109.45906 * 181.38572 * 19 18 17 21 21 N 1.46499 * 109.45889 * 301.34825 * 19 18 17 22 22 C 1.36938 * 119.99952 * 275.06385 * 21 19 18 23 23 H 1.08003 * 119.99757 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00101 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00130 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99950 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46955 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47074 * 119.99879 * 26 24 22 29 29 H 1.48497 * 109.46915 * 239.99914 * 26 24 22 30 30 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 33 33 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 34 34 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 35 35 H 1.09005 * 109.58721 * 294.36791 * 5 3 2 36 36 H 1.08999 * 109.59086 * 54.79412 * 5 3 2 37 37 H 1.09001 * 109.46458 * 300.00172 * 9 7 6 38 38 H 1.08992 * 109.47028 * 60.00025 * 9 7 6 39 39 H 0.96697 * 114.00200 * 89.99684 * 12 11 10 40 40 H 0.96705 * 114.00550 * 270.02776 * 16 15 14 41 41 H 1.09003 * 109.58446 * 293.79935 * 17 6 5 42 42 H 1.08997 * 109.70485 * 173.44394 * 17 6 5 43 43 H 1.09000 * 109.49215 * 185.41308 * 18 17 6 44 44 H 1.08999 * 109.49744 * 65.32257 * 18 17 6 45 45 H 0.96997 * 120.00126 * 95.07153 * 21 19 18 46 46 H 0.96997 * 120.00126 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6057 1.9819 -0.8416 5 6 1.6365 2.1275 1.3095 6 7 2.2437 3.4648 1.3503 7 6 1.4842 4.5570 1.5659 8 8 0.2879 4.4412 1.7291 9 6 2.1212 5.9223 1.6045 10 7 1.0917 6.9346 1.8524 11 6 0.3743 7.5972 0.9004 12 8 0.4885 7.4337 -0.4410 13 7 -0.4461 8.4162 1.5085 14 7 -0.2449 8.2828 2.8887 15 6 0.6877 7.3833 3.0752 16 8 1.1683 6.9704 4.2743 17 6 3.6941 3.5892 1.1509 18 6 4.0739 2.8880 -0.1572 19 6 3.5654 1.4449 -0.1240 20 1 3.8558 0.9364 -1.0434 21 7 4.1496 0.7479 1.0244 22 6 5.3875 0.1720 0.9186 23 1 5.9333 0.2321 -0.0114 24 6 5.9409 -0.4889 2.0066 25 7 5.2755 -0.5626 3.1399 26 14 7.6299 -1.2738 1.8625 27 1 8.1636 -1.0522 0.4945 28 1 8.5468 -0.6616 2.8573 29 1 7.5217 -2.7321 2.1208 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 0.5511 2.2169 1.3557 36 1 1.9930 1.5389 2.1548 37 1 2.8622 5.9549 2.4032 38 1 2.6068 6.1237 0.6498 39 1 -0.0949 6.7541 -0.8055 40 1 1.9234 7.4835 4.5933 41 1 4.2189 3.1196 1.9829 42 1 3.9683 4.6426 1.0938 43 1 5.1582 2.8893 -0.2690 44 1 3.6205 3.4144 -0.9971 45 1 3.6595 0.6941 1.8598 46 1 5.6623 -1.0241 3.9003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037970449.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:09 Heat of formation + Delta-G solvation = -5.067597 kcal Electronic energy + Delta-G solvation = -30998.933485 eV Core-core repulsion = 26734.096703 eV Total energy + Delta-G solvation = -4264.836782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.50645 -40.28957 -38.39674 -38.10043 -37.30120 -34.78559 -34.45372 -33.85710 -31.87297 -29.76789 -29.74774 -29.28215 -27.84535 -24.98657 -23.97674 -23.62923 -22.98181 -22.26925 -21.00877 -20.31513 -19.10351 -18.85583 -18.43261 -17.69881 -17.36414 -16.89808 -16.46292 -15.77366 -15.57475 -15.49692 -14.79658 -14.62790 -14.14237 -14.01290 -13.73418 -13.62823 -13.41780 -13.24529 -13.12112 -12.77089 -12.62501 -12.60244 -12.42025 -11.94111 -11.59237 -11.56659 -11.25694 -11.12047 -10.95230 -10.89811 -10.75926 -10.74649 -10.46461 -10.40547 -10.24779 -9.94314 -9.71903 -9.68222 -9.61235 -9.06205 -8.52030 -7.11387 -5.91153 -3.20481 1.23996 1.53006 2.02890 2.35212 2.86675 3.03908 3.32577 3.39167 3.41393 3.54327 4.13724 4.17757 4.46492 4.59354 4.87924 4.99627 5.00337 5.08489 5.15691 5.27301 5.34146 5.45170 5.46333 5.56028 5.60669 5.64129 5.75653 5.83260 5.90726 5.98272 6.00441 6.16377 6.19967 6.28126 6.38847 6.43394 6.53628 6.59732 6.76140 6.79044 6.83517 7.06401 7.35067 7.57701 7.68497 7.95593 8.26886 9.39018 9.94065 10.28843 11.30957 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.003124 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.480415 B = 8959.672379 C = 9728.826012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.066 0.934 5 C 0.119 3.881 6 N -0.591 5.591 7 C 0.497 3.503 8 O -0.539 6.539 9 C 0.082 3.918 10 N -0.496 5.496 11 C 0.416 3.584 12 O -0.438 6.438 13 N -0.296 5.296 14 N -0.298 5.298 15 C 0.419 3.581 16 O -0.432 6.432 17 C 0.109 3.891 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.053 0.947 21 N -0.719 5.719 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.010 4.010 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.415 0.585 40 H 0.410 0.590 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 11.864 -5.477 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.003 4.003 6 N -0.323 5.323 7 C 0.282 3.718 8 O -0.416 6.416 9 C -0.045 4.045 10 N -0.215 5.215 11 C 0.106 3.894 12 O -0.239 6.239 13 N -0.140 5.140 14 N -0.142 5.142 15 C 0.109 3.891 16 O -0.232 6.232 17 C -0.013 4.013 18 C -0.191 4.191 19 C 0.067 3.933 20 H 0.071 0.929 21 N -0.361 5.361 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.273 0.727 40 H 0.269 0.731 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.463 12.806 -5.157 15.243 hybrid contribution 2.232 -1.787 -0.016 2.859 sum -4.231 11.020 -5.172 12.888 Atomic orbital electron populations 1.21856 0.96757 1.01191 1.01289 1.21422 0.94308 0.95586 1.03518 1.21751 0.97448 0.96286 0.96733 0.91569 1.21773 0.98814 0.81015 0.98712 1.48119 1.08799 1.06465 1.68958 1.20434 0.87399 0.85966 0.78001 1.90753 1.14541 1.86166 1.50178 1.21816 0.89855 0.86099 1.06726 1.46640 1.34332 1.33719 1.06821 1.21252 0.92079 0.92952 0.83140 1.84879 1.66130 1.61816 1.11054 1.78336 1.17526 1.20985 0.97175 1.78342 1.15065 1.15565 1.05259 1.21259 0.94480 0.93453 0.79949 1.85032 1.52664 1.58677 1.26783 1.21847 0.78773 0.99858 1.00844 1.22540 1.02127 0.99444 0.95028 1.20221 0.89637 0.90584 0.92825 0.92925 1.42487 1.19103 1.64030 1.10503 1.19244 0.93511 1.27249 0.97155 0.91165 1.24710 0.98572 1.01292 0.96015 1.69650 1.38023 1.47899 1.02294 0.86178 0.84161 0.78995 0.77163 1.20611 1.21936 1.21921 0.93381 0.93037 0.92854 0.90417 0.91882 0.89486 0.90348 0.85618 0.85278 0.72652 0.73138 0.89048 0.91496 0.90403 0.93171 0.78116 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 37.16 0.36 -1.57 16 2 C -0.11 -1.61 5.19 -26.73 -0.14 -1.75 16 3 C -0.10 -1.46 2.14 -90.50 -0.19 -1.65 16 4 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 5 C 0.12 1.76 5.03 -3.71 -0.02 1.75 16 6 N -0.59 -7.83 2.97 -172.75 -0.51 -8.34 16 7 C 0.50 6.50 7.77 -10.99 -0.09 6.42 16 8 O -0.54 -9.09 15.84 5.55 0.09 -9.00 16 9 C 0.08 0.76 4.84 -5.19 -0.03 0.74 16 10 N -0.50 -5.68 2.25 -121.35 -0.27 -5.96 16 11 C 0.42 5.12 9.15 -88.80 -0.81 4.30 16 12 O -0.44 -4.06 13.58 -18.57 -0.25 -4.31 16 13 N -0.30 -4.42 12.72 29.66 0.38 -4.05 16 14 N -0.30 -4.49 12.72 29.65 0.38 -4.11 16 15 C 0.42 5.27 9.15 -88.82 -0.81 4.46 16 16 O -0.43 -4.27 13.58 -18.58 -0.25 -4.53 16 17 C 0.11 1.36 6.08 -3.71 -0.02 1.34 16 18 C -0.15 -2.04 5.78 -26.61 -0.15 -2.19 16 19 C 0.18 2.90 2.53 -67.89 -0.17 2.73 16 20 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 21 N -0.72 -15.01 3.72 -53.39 -0.20 -15.21 16 22 C -0.24 -5.84 9.93 -15.06 -0.15 -5.99 16 23 H 0.07 1.68 7.83 -52.48 -0.41 1.27 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -25.68 13.06 55.49 0.72 -24.95 16 26 Si 0.90 20.74 29.55 -169.99 -5.02 15.71 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 33 H 0.08 1.34 7.70 -51.93 -0.40 0.94 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.34 5.73 -51.93 -0.30 1.04 16 36 H 0.08 1.34 6.64 -51.93 -0.34 0.99 16 37 H 0.13 0.87 7.94 -51.93 -0.41 0.45 16 38 H 0.13 0.89 7.69 -51.93 -0.40 0.49 16 39 H 0.41 2.24 9.06 45.56 0.41 2.65 16 40 H 0.41 1.48 9.06 45.56 0.41 1.89 16 41 H 0.09 1.42 7.74 -51.93 -0.40 1.02 16 42 H 0.07 0.59 5.95 -51.93 -0.31 0.28 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.38 8.70 5.94 -40.82 -0.24 8.45 16 46 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -34.09 377.28 -6.41 -40.51 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -4.83 Total: 10.32 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -2.32 Total: 8.24 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: 0.49 Total: -62.62 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.42 Total: -17.84 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.09 -6.41 -40.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970449.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.438 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds