Wall clock time and date at job start Sat Apr 11 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39735 * 119.58869 * 240.62870 * 3 2 1 5 5 C 1.37971 * 119.19809 * 180.02562 * 4 3 2 6 6 C 1.40234 * 118.40482 * 359.97438 * 5 4 3 7 7 C 1.47669 * 120.44432 * 179.97438 * 6 5 4 8 8 O 1.21578 * 120.00576 * 201.83790 * 7 6 5 9 9 N 1.34775 * 119.99862 * 21.84130 * 7 6 5 10 10 C 1.48163 * 127.02415 * 6.99561 * 9 7 6 11 11 C 1.55039 * 103.31471 * 140.98468 * 10 9 7 12 12 C 1.54182 * 102.72414 * 37.01146 * 11 10 9 13 13 C 1.47616 * 127.02326 * 186.99495 * 9 7 6 14 14 C 1.52494 * 110.02406 * 219.30484 * 12 11 10 15 15 C 1.53134 * 109.58675 * 298.37384 * 14 12 11 16 16 C 1.53188 * 109.29251 * 299.50836 * 15 14 12 17 17 N 1.46926 * 108.88789 * 55.07748 * 16 15 14 18 18 C 1.36935 * 120.68402 * 125.94534 * 17 16 15 19 19 H 1.08006 * 119.99555 * 334.06474 * 18 17 16 20 20 C 1.38813 * 120.00327 * 154.06446 * 18 17 16 21 21 N 1.31621 * 119.99467 * 343.35318 * 20 18 17 22 22 Si 1.86793 * 119.99982 * 163.35913 * 20 18 17 23 23 H 1.48500 * 109.47300 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47164 * 119.99916 * 22 20 18 25 25 H 1.48501 * 109.47221 * 239.99933 * 22 20 18 26 26 C 1.47039 * 118.63934 * 305.96943 * 17 16 15 27 27 C 1.39660 * 119.11810 * 0.25345 * 6 5 4 28 28 N 1.31484 * 120.71219 * 359.47393 * 27 6 5 29 29 H 4.51262 * 14.17549 * 359.97438 * 4 2 1 30 30 H 1.08001 * 120.39930 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.79709 * 180.02562 * 5 4 3 32 32 H 1.09000 * 110.64779 * 259.44582 * 10 9 7 33 33 H 1.08998 * 110.64713 * 22.36281 * 10 9 7 34 34 H 1.08993 * 110.76303 * 278.70358 * 11 10 9 35 35 H 1.09004 * 110.76134 * 155.31641 * 11 10 9 36 36 H 1.09001 * 109.97075 * 85.96523 * 13 9 7 37 37 H 1.08997 * 110.00403 * 324.70658 * 13 9 7 38 38 H 1.08994 * 109.44631 * 178.34551 * 14 12 11 39 39 H 1.09002 * 109.44229 * 58.40083 * 14 12 11 40 40 H 1.08994 * 109.49840 * 59.45443 * 15 14 12 41 41 H 1.09002 * 109.49472 * 179.56603 * 15 14 12 42 42 H 1.08996 * 109.56747 * 174.90261 * 16 15 14 43 43 H 1.09005 * 109.57024 * 295.25732 * 16 15 14 44 44 H 0.97007 * 119.98971 * 179.97438 * 21 20 18 45 45 H 1.08992 * 109.58241 * 172.58224 * 26 17 16 46 46 H 1.08998 * 109.57924 * 292.99685 * 26 17 16 47 47 H 1.07999 * 119.64602 * 179.74384 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2957 0.5969 1.0589 5 6 4.6753 0.5934 1.0505 6 6 5.3343 -0.0135 -0.0284 7 6 6.8096 -0.0426 -0.0835 8 8 7.3754 -0.1927 -1.1491 9 7 7.5291 0.0972 1.0475 10 6 7.0106 0.1439 2.4347 11 6 8.0629 -0.6644 3.2366 12 6 9.3874 -0.2689 2.5537 13 6 8.9947 0.2350 1.1574 14 6 10.3009 -1.4849 2.4425 15 6 10.6337 -2.0068 3.8431 16 6 11.3532 -0.9099 4.6343 17 7 10.5208 0.3007 4.6337 18 6 10.1730 0.9101 5.8097 19 1 10.1266 0.3351 6.7227 20 6 9.8801 2.2669 5.8283 21 7 10.2428 3.0322 4.8207 22 14 8.9715 3.0064 7.2832 23 1 8.6781 1.9422 8.2764 24 1 9.8152 4.0534 7.9135 25 1 7.6984 3.6115 6.8161 26 6 10.0683 0.8444 3.3446 27 6 4.5766 -0.5850 -1.0530 28 7 3.2627 -0.5665 -1.0071 29 1 -1.0500 0.0002 -0.0007 30 1 2.7553 1.0550 1.8741 31 1 5.2344 1.0465 1.8559 32 1 6.9616 1.1724 2.7923 33 1 6.0308 -0.3298 2.4949 34 1 7.8832 -1.7351 3.1402 35 1 8.0639 -0.3645 4.2846 36 1 9.2797 1.2811 1.0454 37 1 9.4843 -0.3680 0.3927 38 1 11.2216 -1.2016 1.9325 39 1 9.7969 -2.2666 1.8741 40 1 9.7128 -2.2817 4.3572 41 1 11.2804 -2.8805 3.7617 42 1 11.5117 -1.2437 5.6597 43 1 12.3136 -0.6928 4.1667 44 1 10.0378 3.9803 4.8336 45 1 9.3605 1.6549 3.5182 46 1 10.9255 1.2186 2.7850 47 1 5.0753 -1.0510 -1.8900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040496543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:20 Heat of formation + Delta-G solvation = 94.081048 kcal Electronic energy + Delta-G solvation = -29515.040090 eV Core-core repulsion = 25665.351979 eV Total energy + Delta-G solvation = -3849.688111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.96049 -39.77833 -38.27595 -35.91811 -34.26072 -33.40223 -32.85126 -31.41173 -30.74078 -30.01985 -29.27850 -26.31774 -25.43426 -24.82102 -23.72440 -22.95769 -22.24643 -20.83224 -19.77740 -19.73684 -18.28804 -17.27607 -16.69781 -16.54798 -16.40644 -16.02247 -15.48809 -14.80534 -14.62734 -14.49722 -14.15679 -14.06881 -13.86310 -13.56720 -13.37826 -13.12606 -12.95286 -12.63450 -12.40013 -12.26090 -11.94524 -11.70989 -11.54718 -11.20836 -11.16910 -11.03927 -11.00011 -10.74970 -10.43221 -10.31227 -10.25112 -10.16739 -10.04453 -9.86281 -9.72181 -9.58172 -9.45132 -9.15112 -8.56198 -8.53958 -6.77091 -5.87102 -3.28080 0.09466 0.90336 2.27500 2.28478 2.93297 3.03996 3.28849 3.38786 3.39817 3.56052 3.72278 4.28326 4.40661 4.42085 4.53371 4.69697 4.73617 4.89777 5.02211 5.17127 5.26801 5.30142 5.44250 5.47762 5.52800 5.57898 5.60231 5.70181 5.72419 5.76369 5.97467 5.99216 6.05870 6.16981 6.19396 6.25978 6.31993 6.40027 6.45886 6.58956 6.72221 6.78853 6.88376 6.95306 7.06484 7.25154 7.47817 7.55450 7.60979 7.71357 8.11482 8.34915 9.12564 9.76188 10.32639 11.20930 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.003247 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.635482 B = 8619.983639 C =10069.189161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.149 4.149 3 C 0.241 3.759 4 C -0.151 4.151 5 C -0.049 4.049 6 C -0.170 4.170 7 C 0.577 3.423 8 O -0.540 6.540 9 N -0.607 5.607 10 C 0.085 3.915 11 C -0.112 4.112 12 C -0.093 4.093 13 C 0.118 3.882 14 C -0.095 4.095 15 C -0.134 4.134 16 C 0.144 3.856 17 N -0.590 5.590 18 C -0.248 4.248 19 H 0.067 0.933 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.898 3.102 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.185 3.815 27 C 0.163 3.837 28 N -0.474 5.474 29 H 0.231 0.769 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.017 0.983 44 H 0.253 0.747 45 H 0.095 0.905 46 H 0.019 0.981 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.066 -6.554 -6.282 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.150 4.150 3 C 0.106 3.894 4 C -0.171 4.171 5 C -0.075 4.075 6 C -0.175 4.175 7 C 0.365 3.635 8 O -0.418 6.418 9 N -0.339 5.339 10 C -0.037 4.037 11 C -0.150 4.150 12 C -0.096 4.096 13 C -0.005 4.005 14 C -0.132 4.132 15 C -0.173 4.173 16 C 0.017 3.983 17 N -0.312 5.312 18 C -0.377 4.377 19 H 0.085 0.915 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.729 3.271 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.058 3.942 27 C 0.003 3.997 28 N -0.182 5.182 29 H 0.247 0.753 30 H 0.164 0.836 31 H 0.177 0.823 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.063 0.937 45 H 0.114 0.886 46 H 0.037 0.963 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -13.253 -6.841 -7.587 16.733 hybrid contribution -0.107 0.925 1.421 1.699 sum -13.360 -5.916 -6.166 15.859 Atomic orbital electron populations 1.24958 0.95633 0.96987 0.97813 1.19296 0.91044 1.02561 1.02119 1.16777 0.88195 0.93731 0.90699 1.22029 0.94440 1.01070 0.99564 1.22318 0.94324 0.94102 0.96733 1.21107 0.94842 1.03862 0.97722 1.17530 0.85679 0.77281 0.82977 1.90790 1.71927 1.50489 1.28640 1.48772 1.08821 1.70425 1.05925 1.23079 0.98339 1.01489 0.80758 1.22698 0.92800 0.98483 1.01060 1.21853 0.95847 0.98646 0.93239 1.22190 0.78561 1.01650 0.98080 1.21384 0.98678 0.96073 0.97097 1.22030 1.00681 0.98342 0.96222 1.20916 0.92401 0.87426 0.97535 1.44058 1.56612 1.27868 1.02647 1.19232 1.40309 0.90610 0.87557 0.91517 1.24984 1.01256 0.95894 0.97594 1.70026 1.48083 1.04672 1.31979 0.86278 0.79490 0.79080 0.82297 1.20279 1.21769 1.21597 1.20812 0.96946 0.92016 0.84378 1.22934 0.87870 0.92670 0.96202 1.67849 1.09631 1.16447 1.24258 0.75259 0.83557 0.82336 0.89955 0.90328 0.92051 0.88013 0.90870 0.90807 0.92524 0.93501 0.92224 0.93214 0.92930 0.96508 0.93663 0.88650 0.96274 0.80894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 19.25 29.55 0.57 -0.47 16 2 C -0.15 -1.59 13.43 -38.84 -0.52 -2.11 16 3 C 0.24 2.88 6.59 -84.90 -0.56 2.32 16 4 C -0.15 -1.54 9.77 -39.12 -0.38 -1.92 16 5 C -0.05 -0.54 8.05 -38.93 -0.31 -0.85 16 6 C -0.17 -2.21 5.74 -104.77 -0.60 -2.81 16 7 C 0.58 8.91 7.71 -12.41 -0.10 8.81 16 8 O -0.54 -9.86 16.87 5.30 0.09 -9.77 16 9 N -0.61 -9.07 3.29 -171.01 -0.56 -9.63 16 10 C 0.09 1.14 5.09 -2.05 -0.01 1.13 16 11 C -0.11 -1.72 5.00 -25.04 -0.13 -1.85 16 12 C -0.09 -1.56 0.63 -154.07 -0.10 -1.66 16 13 C 0.12 1.90 6.31 -3.14 -0.02 1.88 16 14 C -0.09 -1.49 4.34 -26.92 -0.12 -1.61 16 15 C -0.13 -2.14 5.89 -26.57 -0.16 -2.29 16 16 C 0.14 2.78 6.50 -3.71 -0.02 2.76 16 17 N -0.59 -13.31 2.51 -172.59 -0.43 -13.75 16 18 C -0.25 -6.19 9.61 -15.06 -0.14 -6.34 16 19 H 0.07 1.66 7.88 -52.48 -0.41 1.25 16 20 C 0.00 0.02 4.95 -17.43 -0.09 -0.06 16 21 N -0.90 -24.31 11.03 55.49 0.61 -23.69 16 22 Si 0.90 20.20 29.58 -169.99 -5.03 15.17 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.18 3.91 3.66 -3.95 -0.01 3.90 16 27 C 0.16 2.09 10.75 -17.17 -0.18 1.90 16 28 N -0.47 -6.27 10.27 -10.78 -0.11 -6.38 16 29 H 0.23 0.72 7.80 -54.09 -0.42 0.30 16 30 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.16 1.57 4.92 -52.48 -0.26 1.31 16 32 H 0.08 1.12 7.78 -51.93 -0.40 0.72 16 33 H 0.08 0.88 5.79 -51.93 -0.30 0.58 16 34 H 0.06 0.88 7.63 -51.93 -0.40 0.49 16 35 H 0.10 1.79 7.48 -51.93 -0.39 1.40 16 36 H 0.07 1.24 7.67 -51.93 -0.40 0.84 16 37 H 0.07 1.20 7.54 -51.93 -0.39 0.81 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.96 7.13 -51.93 -0.37 0.59 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 1.01 7.93 -51.93 -0.41 0.59 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 45 H 0.10 2.26 5.92 -51.93 -0.31 1.95 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.17 2.04 7.80 -52.49 -0.41 1.63 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -30.17 378.47 -9.16 -39.32 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.54 Total: 2.31 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.88 Total: 0.72 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.50 Total: -53.46 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.17 -9.16 -39.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040496543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.405 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds