Wall clock time and date at job start Sat Apr 11 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39995 * 120.45835 * 161.02922 * 3 2 1 5 5 C 1.38219 * 118.36666 * 179.70057 * 4 3 2 6 6 C 1.39493 * 119.20876 * 0.27711 * 5 4 3 7 7 C 1.47984 * 119.57310 * 180.02562 * 6 5 4 8 8 O 1.21543 * 119.99634 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00306 * 180.02562 * 7 6 5 10 10 C 1.47486 * 125.66186 * 359.69407 * 9 7 6 11 11 C 1.55242 * 104.79340 * 155.92890 * 10 9 7 12 12 C 1.54515 * 101.43748 * 36.66223 * 11 10 9 13 13 C 1.47178 * 125.66219 * 179.97438 * 9 7 6 14 14 C 1.52273 * 110.20506 * 83.42342 * 12 11 10 15 15 C 1.53315 * 109.42416 * 182.19577 * 14 12 11 16 16 N 1.46930 * 108.70496 * 306.49601 * 15 14 12 17 17 C 1.36943 * 120.56053 * 234.20607 * 16 15 14 18 18 H 1.07994 * 119.99817 * 152.08605 * 17 16 15 19 19 C 1.38810 * 119.99908 * 332.08459 * 17 16 15 20 20 N 1.31622 * 120.00160 * 342.48347 * 19 17 16 21 21 Si 1.86797 * 119.99794 * 162.48585 * 19 17 16 22 22 H 1.48493 * 109.47429 * 94.33573 * 21 19 17 23 23 H 1.48502 * 109.47225 * 214.33395 * 21 19 17 24 24 H 1.48501 * 109.47306 * 334.32824 * 21 19 17 25 25 C 1.46932 * 118.87406 * 54.23469 * 16 15 14 26 26 C 1.52274 * 110.20851 * 206.61023 * 12 11 10 27 27 N 1.32829 * 120.85692 * 359.97438 * 6 5 4 28 28 C 1.31294 * 121.79224 * 359.97438 * 27 6 5 29 29 H 4.52937 * 13.94670 * 359.97438 * 4 2 1 30 30 H 1.07993 * 120.81440 * 359.97438 * 4 3 2 31 31 H 1.07996 * 120.39616 * 180.29992 * 5 4 3 32 32 H 1.08996 * 110.35145 * 274.87496 * 10 9 7 33 33 H 1.08994 * 110.35268 * 37.16322 * 10 9 7 34 34 H 1.08996 * 111.20257 * 278.57016 * 11 10 9 35 35 H 1.08998 * 110.91304 * 154.62755 * 11 10 9 36 36 H 1.08995 * 109.91125 * 300.83908 * 13 9 7 37 37 H 1.09007 * 109.90641 * 61.91515 * 13 9 7 38 38 H 1.08999 * 109.48325 * 302.18301 * 14 12 11 39 39 H 1.09008 * 109.47736 * 62.21228 * 14 12 11 40 40 H 1.08997 * 109.59977 * 186.72300 * 15 14 12 41 41 H 1.09002 * 109.59186 * 66.25655 * 15 14 12 42 42 H 0.97001 * 119.99889 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.59753 * 185.99570 * 25 16 15 44 44 H 1.08996 * 109.73321 * 65.59701 * 25 16 15 45 45 H 1.09000 * 109.47961 * 297.77828 * 26 12 11 46 46 H 1.08997 * 109.48032 * 57.80018 * 26 12 11 47 47 H 1.07990 * 119.65104 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3151 1.1422 -0.3923 5 6 4.6964 1.0972 -0.3699 6 6 5.3328 -0.0766 0.0340 7 6 6.8113 -0.1335 0.0616 8 8 7.4630 0.8387 -0.2660 9 7 7.4351 -1.2633 0.4498 10 6 6.7709 -2.5089 0.8771 11 6 7.8163 -3.6260 0.6139 12 6 9.1334 -2.9051 0.9786 13 6 8.8922 -1.4571 0.5233 14 6 9.3661 -2.9636 2.4823 15 6 10.6474 -2.1969 2.8301 16 7 11.7472 -2.7195 2.0078 17 6 12.9032 -3.1638 2.5922 18 1 13.4960 -3.9247 2.1064 19 6 13.3131 -2.6361 3.8089 20 7 12.8101 -1.4969 4.2351 21 14 14.5787 -3.5427 4.8412 22 1 15.9331 -3.0127 4.5420 23 1 14.2766 -3.3443 6.2816 24 1 14.5323 -4.9921 4.5210 25 6 11.5858 -2.7567 0.5479 26 6 10.2985 -3.5201 0.2150 27 7 4.6289 -1.1436 0.3951 28 6 3.3160 -1.1408 0.3885 29 1 -1.0500 -0.0011 -0.0001 30 1 2.7957 2.0374 -0.7006 31 1 5.2761 1.9605 -0.6612 32 1 6.5221 -2.4614 1.9372 33 1 5.8734 -2.6828 0.2836 34 1 7.8137 -3.9296 -0.4329 35 1 7.6448 -4.4811 1.2677 36 1 9.3379 -1.2974 -0.4585 37 1 9.3232 -0.7620 1.2439 38 1 8.5199 -2.5107 2.9990 39 1 9.4685 -4.0031 2.7941 40 1 10.8817 -2.3362 3.8855 41 1 10.5068 -1.1363 2.6213 42 1 13.0969 -1.1280 5.0852 43 1 12.4389 -3.2652 0.0985 44 1 11.5193 -1.7407 0.1589 45 1 10.4108 -4.5653 0.5033 46 1 10.1050 -3.4572 -0.8558 47 1 2.7783 -2.0277 0.6894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040917425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:39 Heat of formation + Delta-G solvation = 91.675587 kcal Electronic energy + Delta-G solvation = -29123.682072 eV Core-core repulsion = 25273.889653 eV Total energy + Delta-G solvation = -3849.792420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.01555 -39.85850 -38.23514 -35.84565 -34.77412 -33.15210 -32.55572 -31.27868 -30.79483 -29.94966 -29.17174 -26.98164 -25.37595 -24.16084 -23.93182 -22.81595 -22.15340 -20.62063 -20.25447 -19.57056 -18.12107 -17.52572 -17.06113 -16.42965 -16.01999 -15.97245 -15.56707 -14.86028 -14.84787 -14.57780 -13.95270 -13.88757 -13.71046 -13.62713 -13.23068 -13.10526 -13.00272 -12.83375 -12.39752 -12.21393 -12.08309 -11.87621 -11.57845 -11.33981 -11.22531 -11.09760 -10.86454 -10.67459 -10.43684 -10.33271 -10.23100 -10.15991 -10.08915 -9.80334 -9.57102 -9.46337 -9.29790 -9.20710 -8.46265 -8.37199 -6.61315 -5.74832 -3.16682 -0.01377 0.80997 2.19152 2.21950 2.95285 2.98840 3.39505 3.46869 3.49107 3.63211 3.65644 3.89365 4.34036 4.38792 4.52915 4.67565 4.76769 4.86660 4.93463 5.15471 5.26045 5.35094 5.42661 5.45349 5.54174 5.56361 5.68259 5.72350 5.76091 5.95540 6.03260 6.09817 6.11777 6.15730 6.17587 6.32319 6.35587 6.44740 6.53514 6.65659 6.71952 6.80324 6.90062 6.96156 7.02824 7.32177 7.40091 7.61581 7.70541 7.83393 8.15478 8.49223 9.25380 9.89314 10.46034 11.33415 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.002339 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.898027 B =11968.966739 C =12035.449783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.155 4.155 3 C -0.025 4.025 4 C -0.059 4.059 5 C -0.109 4.109 6 C 0.098 3.902 7 C 0.574 3.426 8 O -0.535 6.535 9 N -0.591 5.591 10 C 0.104 3.896 11 C -0.132 4.132 12 C -0.055 4.055 13 C 0.115 3.885 14 C -0.127 4.127 15 C 0.170 3.830 16 N -0.591 5.591 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.142 3.858 26 C -0.117 4.117 27 N -0.448 5.448 28 C 0.122 3.878 29 H 0.227 0.773 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.019 0.981 42 H 0.253 0.747 43 H 0.053 0.947 44 H 0.018 0.982 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.317 0.133 -9.313 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.155 4.155 3 C -0.027 4.027 4 C -0.084 4.084 5 C -0.130 4.130 6 C -0.040 4.040 7 C 0.361 3.639 8 O -0.412 6.412 9 N -0.322 5.322 10 C -0.019 4.019 11 C -0.170 4.170 12 C -0.056 4.056 13 C -0.006 4.006 14 C -0.166 4.166 15 C 0.044 3.956 16 N -0.313 5.313 17 C -0.380 4.380 18 H 0.082 0.918 19 C -0.198 4.198 20 N -0.546 5.546 21 Si 0.730 3.270 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.016 3.984 26 C -0.157 4.157 27 N -0.159 5.159 28 C -0.038 4.038 29 H 0.244 0.756 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -23.408 0.065 -9.093 25.113 hybrid contribution -0.095 0.365 0.417 0.562 sum -23.504 0.430 -8.676 25.058 Atomic orbital electron populations 1.24964 0.95754 0.98378 0.98195 1.19680 0.91577 1.02169 1.02114 1.17160 0.88010 0.95848 1.01687 1.21676 0.93465 0.97704 0.95552 1.22068 0.94416 0.99067 0.97464 1.21351 0.94506 0.90511 0.97630 1.17407 0.85423 0.82384 0.78706 1.90817 1.65810 1.34986 1.49613 1.48430 1.08398 1.12496 1.62871 1.22745 0.96445 0.82137 1.00565 1.23004 0.94797 0.97504 1.01695 1.20971 0.94456 0.92623 0.97568 1.22239 0.78636 0.97834 1.01888 1.22097 1.00235 1.01751 0.92490 1.20837 0.83692 0.93338 0.97750 1.44036 1.14052 1.74010 0.99223 1.19173 1.00310 1.14974 1.03560 0.91752 1.25037 0.98646 0.95631 1.00448 1.70044 1.46066 1.17074 1.21448 0.86315 0.81249 0.79565 0.79844 1.21532 1.21629 1.20477 1.20954 0.94329 0.96470 0.86649 1.21917 0.95971 1.00369 0.97416 1.67926 1.07791 1.27406 1.12753 1.23049 0.89296 0.96942 0.94535 0.75597 0.83641 0.82694 0.91420 0.88164 0.91143 0.90043 0.91428 0.90073 0.93261 0.92198 0.89409 0.96304 0.93692 0.92798 0.96376 0.91768 0.92983 0.81559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 19.25 29.55 0.57 -0.31 16 2 C -0.15 -1.20 13.28 -38.84 -0.52 -1.72 16 3 C -0.02 -0.21 5.75 -106.68 -0.61 -0.83 16 4 C -0.06 -0.49 9.89 -38.93 -0.39 -0.88 16 5 C -0.11 -1.15 9.61 -39.12 -0.38 -1.53 16 6 C 0.10 1.25 6.72 -82.97 -0.56 0.69 16 7 C 0.57 9.24 7.83 -12.27 -0.10 9.15 16 8 O -0.54 -10.15 16.64 5.33 0.09 -10.06 16 9 N -0.59 -9.24 3.33 -171.59 -0.57 -9.82 16 10 C 0.10 1.34 5.63 -2.31 -0.01 1.33 16 11 C -0.13 -1.70 6.00 -24.75 -0.15 -1.85 16 12 C -0.06 -0.90 0.53 -154.09 -0.08 -0.98 16 13 C 0.12 2.00 5.05 -3.31 -0.02 1.98 16 14 C -0.13 -2.35 4.78 -26.94 -0.13 -2.48 16 15 C 0.17 4.01 5.03 -3.64 -0.02 3.99 16 16 N -0.59 -14.67 2.98 -172.16 -0.51 -15.18 16 17 C -0.25 -6.86 9.57 -15.06 -0.14 -7.00 16 18 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 19 C 0.00 0.02 4.90 -17.43 -0.09 -0.06 16 20 N -0.90 -26.40 11.20 55.49 0.62 -25.77 16 21 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.14 2.97 6.24 -3.64 -0.02 2.94 16 26 C -0.12 -1.97 4.70 -26.94 -0.13 -2.10 16 27 N -0.45 -5.08 6.55 -9.49 -0.06 -5.14 16 28 C 0.12 1.09 10.92 -17.15 -0.19 0.91 16 29 H 0.23 0.39 7.80 -54.09 -0.42 -0.03 16 30 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.16 1.55 7.63 -52.49 -0.40 1.15 16 32 H 0.07 0.89 7.74 -51.93 -0.40 0.48 16 33 H 0.10 1.18 5.87 -51.93 -0.30 0.88 16 34 H 0.07 0.85 8.01 -51.93 -0.42 0.43 16 35 H 0.08 0.96 8.01 -51.93 -0.42 0.55 16 36 H 0.07 1.19 7.59 -51.93 -0.39 0.80 16 37 H 0.08 1.63 6.08 -51.93 -0.32 1.32 16 38 H 0.05 0.86 7.47 -51.93 -0.39 0.47 16 39 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 40 H 0.09 2.35 6.02 -51.93 -0.31 2.04 16 41 H 0.02 0.48 6.53 -51.93 -0.34 0.14 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 44 H 0.02 0.39 7.48 -51.93 -0.39 0.00 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 47 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 378.15 15.07 5.70 5.70 Total: -1.00 -32.59 378.15 -9.29 -41.88 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.57 Total: 0.38 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.95 Total: 1.27 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.53 Total: -55.91 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.59 -9.29 -41.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040917425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.555 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds