Wall clock time and date at job start Sat Apr 11 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39995 * 120.45835 * 161.02922 * 3 2 1 5 5 C 1.38219 * 118.36666 * 179.70057 * 4 3 2 6 6 C 1.39493 * 119.20876 * 0.27711 * 5 4 3 7 7 C 1.47984 * 119.57310 * 180.02562 * 6 5 4 8 8 O 1.21543 * 119.99634 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00306 * 180.02562 * 7 6 5 10 10 C 1.47486 * 125.66186 * 359.69407 * 9 7 6 11 11 C 1.55242 * 104.79340 * 155.92890 * 10 9 7 12 12 C 1.54515 * 101.43748 * 36.66223 * 11 10 9 13 13 C 1.47178 * 125.66219 * 179.97438 * 9 7 6 14 14 C 1.52273 * 110.20506 * 83.42342 * 12 11 10 15 15 C 1.53315 * 109.42416 * 182.19577 * 14 12 11 16 16 N 1.46930 * 108.70496 * 306.49601 * 15 14 12 17 17 C 1.36943 * 120.56053 * 234.20607 * 16 15 14 18 18 H 1.07994 * 119.99817 * 152.08605 * 17 16 15 19 19 C 1.38810 * 119.99908 * 332.08459 * 17 16 15 20 20 N 1.31622 * 120.00160 * 342.48347 * 19 17 16 21 21 Si 1.86797 * 119.99794 * 162.48585 * 19 17 16 22 22 H 1.48493 * 109.47429 * 94.33573 * 21 19 17 23 23 H 1.48502 * 109.47225 * 214.33395 * 21 19 17 24 24 H 1.48501 * 109.47306 * 334.32824 * 21 19 17 25 25 C 1.46932 * 118.87406 * 54.23469 * 16 15 14 26 26 C 1.52274 * 110.20851 * 206.61023 * 12 11 10 27 27 N 1.32829 * 120.85692 * 359.97438 * 6 5 4 28 28 C 1.31294 * 121.79224 * 359.97438 * 27 6 5 29 29 H 4.52937 * 13.94670 * 359.97438 * 4 2 1 30 30 H 1.07993 * 120.81440 * 359.97438 * 4 3 2 31 31 H 1.07996 * 120.39616 * 180.29992 * 5 4 3 32 32 H 1.08996 * 110.35145 * 274.87496 * 10 9 7 33 33 H 1.08994 * 110.35268 * 37.16322 * 10 9 7 34 34 H 1.08996 * 111.20257 * 278.57016 * 11 10 9 35 35 H 1.08998 * 110.91304 * 154.62755 * 11 10 9 36 36 H 1.08995 * 109.91125 * 300.83908 * 13 9 7 37 37 H 1.09007 * 109.90641 * 61.91515 * 13 9 7 38 38 H 1.08999 * 109.48325 * 302.18301 * 14 12 11 39 39 H 1.09008 * 109.47736 * 62.21228 * 14 12 11 40 40 H 1.08997 * 109.59977 * 186.72300 * 15 14 12 41 41 H 1.09002 * 109.59186 * 66.25655 * 15 14 12 42 42 H 0.97001 * 119.99889 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.59753 * 185.99570 * 25 16 15 44 44 H 1.08996 * 109.73321 * 65.59701 * 25 16 15 45 45 H 1.09000 * 109.47961 * 297.77828 * 26 12 11 46 46 H 1.08997 * 109.48032 * 57.80018 * 26 12 11 47 47 H 1.07990 * 119.65104 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3151 1.1422 -0.3923 5 6 4.6964 1.0972 -0.3699 6 6 5.3328 -0.0766 0.0340 7 6 6.8113 -0.1335 0.0616 8 8 7.4630 0.8387 -0.2660 9 7 7.4351 -1.2633 0.4498 10 6 6.7709 -2.5089 0.8771 11 6 7.8163 -3.6260 0.6139 12 6 9.1334 -2.9051 0.9786 13 6 8.8922 -1.4571 0.5233 14 6 9.3661 -2.9636 2.4823 15 6 10.6474 -2.1969 2.8301 16 7 11.7472 -2.7195 2.0078 17 6 12.9032 -3.1638 2.5922 18 1 13.4960 -3.9247 2.1064 19 6 13.3131 -2.6361 3.8089 20 7 12.8101 -1.4969 4.2351 21 14 14.5787 -3.5427 4.8412 22 1 15.9331 -3.0127 4.5420 23 1 14.2766 -3.3443 6.2816 24 1 14.5323 -4.9921 4.5210 25 6 11.5858 -2.7567 0.5479 26 6 10.2985 -3.5201 0.2150 27 7 4.6289 -1.1436 0.3951 28 6 3.3160 -1.1408 0.3885 29 1 -1.0500 -0.0011 -0.0001 30 1 2.7957 2.0374 -0.7006 31 1 5.2761 1.9605 -0.6612 32 1 6.5221 -2.4614 1.9372 33 1 5.8734 -2.6828 0.2836 34 1 7.8137 -3.9296 -0.4329 35 1 7.6448 -4.4811 1.2677 36 1 9.3379 -1.2974 -0.4585 37 1 9.3232 -0.7620 1.2439 38 1 8.5199 -2.5107 2.9990 39 1 9.4685 -4.0031 2.7941 40 1 10.8817 -2.3362 3.8855 41 1 10.5068 -1.1363 2.6213 42 1 13.0969 -1.1280 5.0852 43 1 12.4389 -3.2652 0.0985 44 1 11.5193 -1.7407 0.1589 45 1 10.4108 -4.5653 0.5033 46 1 10.1050 -3.4572 -0.8558 47 1 2.7783 -2.0277 0.6894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040917425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:38 Heat of formation + Delta-G solvation = 73.014879 kcal Electronic energy + Delta-G solvation = -29124.491261 eV Core-core repulsion = 25273.889653 eV Total energy + Delta-G solvation = -3850.601609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01278 -40.98948 -39.54212 -37.44085 -35.47111 -34.72088 -33.35547 -32.81694 -31.70137 -31.61629 -30.55837 -28.37235 -26.80749 -25.46209 -24.67482 -24.20781 -23.78569 -22.20181 -21.30894 -20.12734 -19.72533 -18.73779 -18.28801 -17.81055 -17.17862 -16.87261 -16.68648 -16.51817 -15.86384 -15.66304 -15.59009 -15.29381 -14.89359 -14.80570 -14.64201 -14.46705 -14.26309 -14.02419 -13.73257 -13.55433 -13.24507 -13.04963 -12.98814 -12.71601 -12.63063 -12.55754 -12.32107 -12.17349 -11.94093 -11.86131 -11.79318 -11.48637 -11.40925 -11.07609 -10.96734 -10.93926 -10.51547 -10.41569 -9.95881 -9.62937 -8.65375 -7.85936 -5.31373 -0.78929 0.10995 1.35399 1.46349 1.47505 1.58099 1.71442 1.81693 2.17856 2.52071 2.88435 2.90117 3.24352 3.27631 3.48238 3.65677 3.69304 3.74213 3.76829 3.83987 3.90611 4.09478 4.27254 4.32754 4.46403 4.55340 4.62761 4.63417 4.67569 4.73346 4.77050 4.82865 4.91484 4.92343 5.02315 5.04657 5.09518 5.14418 5.19739 5.30290 5.34010 5.38605 5.42975 5.50868 5.53000 5.66039 5.78436 6.37701 6.40067 6.49014 6.58722 6.96056 7.15731 7.87916 8.39890 9.20128 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.002339 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.898027 B =11968.966739 C =12035.449783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.209 4.209 3 C -0.012 4.012 4 C -0.055 4.055 5 C -0.111 4.111 6 C 0.069 3.931 7 C 0.568 3.432 8 O -0.579 6.579 9 N -0.594 5.594 10 C 0.106 3.894 11 C -0.117 4.117 12 C -0.052 4.052 13 C 0.122 3.878 14 C -0.110 4.110 15 C 0.178 3.822 16 N -0.607 5.607 17 C -0.258 4.258 18 H 0.069 0.931 19 C -0.056 4.056 20 N -0.938 5.938 21 Si 0.968 3.032 22 H -0.288 1.288 23 H -0.294 1.294 24 H -0.266 1.266 25 C 0.137 3.863 26 C -0.104 4.104 27 N -0.456 5.456 28 C 0.119 3.881 29 H 0.263 0.737 30 H 0.172 0.828 31 H 0.151 0.849 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.052 0.948 41 H -0.014 1.014 42 H 0.248 0.752 43 H 0.055 0.945 44 H 0.004 0.996 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.014 -2.120 -10.322 29.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.209 4.209 3 C -0.014 4.014 4 C -0.081 4.081 5 C -0.132 4.132 6 C -0.067 4.067 7 C 0.356 3.644 8 O -0.460 6.460 9 N -0.325 5.325 10 C -0.015 4.015 11 C -0.154 4.154 12 C -0.053 4.053 13 C -0.001 4.001 14 C -0.149 4.149 15 C 0.052 3.948 16 N -0.331 5.331 17 C -0.389 4.389 18 H 0.087 0.913 19 C -0.251 4.251 20 N -0.585 5.585 21 Si 0.796 3.204 22 H -0.215 1.215 23 H -0.220 1.220 24 H -0.191 1.191 25 C 0.011 3.989 26 C -0.143 4.143 27 N -0.166 5.166 28 C -0.042 4.042 29 H 0.280 0.720 30 H 0.190 0.810 31 H 0.169 0.831 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.004 0.996 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.022 0.978 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -27.125 -2.225 -10.127 29.039 hybrid contribution 0.874 1.158 0.684 1.604 sum -26.250 -1.066 -9.443 27.918 Atomic orbital electron populations 1.25888 0.96439 0.95619 0.94890 1.19775 0.91777 1.04696 1.04676 1.17333 0.89027 0.95424 0.99644 1.21938 0.92390 0.98839 0.94889 1.22098 0.95487 0.98264 0.97331 1.20897 0.92577 0.92218 1.00988 1.18018 0.87009 0.81718 0.77624 1.90772 1.67221 1.36411 1.51565 1.48544 1.07651 1.13502 1.62767 1.22895 0.96965 0.80801 1.00840 1.22984 0.91567 0.97536 1.03355 1.20883 0.96507 0.92366 0.95538 1.21986 0.80041 0.97805 1.00249 1.21857 0.97450 1.00966 0.94635 1.20596 0.86045 0.92441 0.95692 1.44308 1.13818 1.73959 1.00996 1.19546 1.00898 1.14638 1.03786 0.91323 1.25841 1.01065 0.96378 1.01783 1.70224 1.47913 1.18759 1.21570 0.85253 0.78566 0.78878 0.77697 1.21518 1.22018 1.19055 1.21119 0.96921 0.96469 0.84366 1.21780 0.93500 0.99824 0.99211 1.67784 1.08932 1.26922 1.12999 1.23507 0.88441 0.98173 0.94064 0.72047 0.81035 0.83105 0.91463 0.86345 0.89208 0.87880 0.92154 0.94167 0.92316 0.91510 0.92996 0.99570 0.94288 0.92626 0.97803 0.90876 0.90099 0.78804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 19.25 74.32 1.43 0.67 16 2 C -0.21 -2.55 13.28 30.02 0.40 -2.15 16 3 C -0.01 -0.18 5.75 -21.20 -0.12 -0.30 16 4 C -0.06 -0.85 9.89 22.69 0.22 -0.62 16 5 C -0.11 -2.35 9.61 22.57 0.22 -2.13 16 6 C 0.07 1.79 6.72 41.88 0.28 2.07 16 7 C 0.57 19.07 7.83 86.83 0.68 19.75 16 8 O -0.58 -23.55 16.64 -3.85 -0.06 -23.62 16 9 N -0.59 -18.89 3.33 -815.07 -2.72 -21.60 16 10 C 0.11 2.57 5.63 86.96 0.49 3.06 16 11 C -0.12 -2.65 6.00 31.88 0.19 -2.45 16 12 C -0.05 -1.65 0.53 -51.91 -0.03 -1.67 16 13 C 0.12 4.37 5.05 86.48 0.44 4.81 16 14 C -0.11 -4.11 4.78 30.46 0.15 -3.96 16 15 C 0.18 8.89 5.03 86.40 0.43 9.32 16 16 N -0.61 -31.16 2.98 -698.59 -2.08 -33.25 16 17 C -0.26 -14.46 9.57 84.03 0.80 -13.66 16 18 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 19 C -0.06 -3.20 4.90 84.86 0.42 -2.78 16 20 N -0.94 -57.59 11.20 21.65 0.24 -57.35 16 21 Si 0.97 45.79 29.59 68.60 2.03 47.82 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.14 5.78 6.24 86.40 0.54 6.32 16 26 C -0.10 -3.34 4.70 30.46 0.14 -3.20 16 27 N -0.46 -9.75 6.55 -183.94 -1.21 -10.95 16 28 C 0.12 1.87 10.92 85.18 0.93 2.80 16 29 H 0.26 -0.57 7.80 -4.42 -0.03 -0.60 16 30 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.15 3.21 7.63 -2.91 -0.02 3.18 16 32 H 0.07 1.65 7.74 -2.39 -0.02 1.63 16 33 H 0.12 2.50 5.87 -2.39 -0.01 2.48 16 34 H 0.09 1.78 8.01 -2.39 -0.02 1.76 16 35 H 0.10 1.98 8.01 -2.39 -0.02 1.96 16 36 H 0.06 2.22 7.59 -2.39 -0.02 2.20 16 37 H 0.04 1.76 6.08 -2.38 -0.01 1.75 16 38 H 0.06 2.06 7.47 -2.39 -0.02 2.04 16 39 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 40 H 0.05 2.94 6.02 -2.39 -0.01 2.93 16 41 H -0.01 -0.76 6.53 -2.39 -0.02 -0.77 16 42 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.06 2.29 7.93 -2.38 -0.02 2.27 16 44 H 0.00 0.18 7.48 -2.39 -0.02 0.16 16 45 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.08 2.18 8.10 -2.39 -0.02 2.16 16 47 H 0.20 1.82 8.06 -2.92 -0.02 1.80 16 Total: -1.00 -76.22 378.15 4.79 -71.43 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.98 Total: 11.65 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 7.61 Total: 15.87 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -5.76 Total: -123.15 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.06 Total: -23.62 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -76.22 4.79 -71.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040917425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.445 kcal (2) G-P(sol) polarization free energy of solvation -76.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds