Wall clock time and date at job start Sat Apr 11 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29400 * 125.58352 * 2 1 4 4 N 1.40174 * 108.13932 * 179.97438 * 3 2 1 5 5 C 1.46494 * 126.34991 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46830 * 270.02587 * 5 4 3 7 7 O 1.21280 * 120.00307 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99623 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00295 * 0.02562 * 8 6 5 10 10 C 1.46505 * 119.99729 * 179.97438 * 8 6 5 11 11 H 1.08999 * 110.88693 * 3.87860 * 10 8 6 12 12 C 1.54908 * 111.03573 * 127.78829 * 10 8 6 13 13 N 1.47422 * 104.83357 * 155.09875 * 12 10 8 14 14 C 1.36934 * 125.65321 * 155.91756 * 13 12 10 15 15 H 1.08007 * 119.99611 * 359.96759 * 14 13 12 16 16 C 1.38808 * 120.00627 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99418 * 359.97438 * 16 14 13 18 18 Si 1.86790 * 120.00320 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47113 * 89.99796 * 18 16 14 20 20 H 1.48502 * 109.47095 * 209.99480 * 18 16 14 21 21 H 1.48503 * 109.47330 * 329.99496 * 18 16 14 22 22 C 1.47031 * 108.70136 * 335.86884 * 13 12 10 23 23 C 1.54327 * 107.26879 * 1.05978 * 22 13 12 24 24 H 1.08997 * 110.72099 * 263.64813 * 23 22 13 25 25 O 1.42901 * 110.71576 * 140.55791 * 23 22 13 26 26 C 1.34947 * 107.29531 * 0.26191 * 4 3 2 27 27 O 1.21813 * 126.29564 * 179.71756 * 26 4 3 28 28 N 1.34811 * 107.39750 * 359.57873 * 26 4 3 29 29 C 1.46503 * 125.83153 * 180.13493 * 28 26 4 30 30 H 1.09001 * 109.47139 * 0.02967 * 1 2 3 31 31 H 1.09004 * 109.46732 * 120.02548 * 1 2 3 32 32 H 1.09000 * 109.47102 * 240.02927 * 1 2 3 33 33 H 1.08994 * 109.47236 * 150.02607 * 5 4 3 34 34 H 1.08999 * 109.47300 * 30.02327 * 5 4 3 35 35 H 1.08997 * 109.47034 * 270.00001 * 9 8 6 36 36 H 1.09003 * 109.47046 * 29.99632 * 9 8 6 37 37 H 1.08993 * 109.47173 * 150.00028 * 9 8 6 38 38 H 1.09000 * 110.36459 * 273.93329 * 12 10 8 39 39 H 1.08998 * 110.36772 * 36.25498 * 12 10 8 40 40 H 0.97008 * 119.99709 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.88059 * 241.64343 * 22 13 12 42 42 H 1.08994 * 109.87878 * 120.47623 * 22 13 12 43 43 H 0.96704 * 114.00059 * 61.45137 * 25 23 22 44 44 H 1.08997 * 109.47545 * 270.33414 * 29 28 26 45 45 H 1.08999 * 109.46833 * 30.34002 * 29 28 26 46 46 H 1.09000 * 109.46863 * 150.33157 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2601 1.0524 0.0000 4 7 3.5973 0.6322 0.0006 5 6 4.7794 1.4975 0.0013 6 6 5.1850 1.7949 -1.4193 7 8 4.5495 1.3295 -2.3415 8 7 6.2540 2.5782 -1.6649 9 6 7.0219 3.1400 -0.5509 10 6 6.6487 2.8669 -3.0459 11 1 5.9402 2.4329 -3.7514 12 6 6.7966 4.3919 -3.2747 13 7 7.7361 4.5146 -4.4041 14 6 7.8253 5.5833 -5.2556 15 1 7.1701 6.4323 -5.1270 16 6 8.7574 5.5756 -6.2841 17 7 9.5561 4.5411 -6.4405 18 14 8.8785 7.0331 -7.4460 19 1 9.8509 8.0172 -6.9061 20 1 9.3354 6.5664 -8.7796 21 1 7.5455 7.6746 -7.5760 22 6 8.5624 3.3000 -4.4641 23 6 8.0906 2.3683 -3.3280 24 1 8.7212 2.4848 -2.4467 25 8 8.0789 1.0070 -3.7625 26 6 3.5938 -0.7173 -0.0049 27 8 4.5737 -1.4409 -0.0111 28 7 2.3064 -1.1171 0.0006 29 6 1.8395 -2.5057 0.0003 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5143 -0.8898 32 1 -0.3633 -0.5134 0.8902 33 1 5.5981 0.9937 0.5150 34 1 4.5468 2.4300 0.5156 35 1 6.6051 4.1083 -0.2741 36 1 6.9703 2.4646 0.3031 37 1 8.0617 3.2650 -0.8529 38 1 5.8334 4.8319 -3.5330 39 1 7.2072 4.8707 -2.3858 40 1 10.2078 4.5358 -7.1590 41 1 9.6116 3.5580 -4.3204 42 1 8.4282 2.8076 -5.4272 43 1 8.9465 0.6706 -4.0255 44 1 1.7243 -2.8502 -1.0273 45 1 2.5670 -3.1336 0.5147 46 1 0.8799 -2.5665 0.5136 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047613145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:42 Heat of formation + Delta-G solvation = 11.664317 kcal Electronic energy + Delta-G solvation = -30408.536164 eV Core-core repulsion = 26144.424933 eV Total energy + Delta-G solvation = -4264.111232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.57693 -39.91117 -37.89013 -37.42143 -35.51682 -35.17606 -34.76515 -32.53155 -31.93574 -30.63906 -28.64023 -27.60877 -27.42411 -26.89551 -26.08072 -24.25833 -22.10510 -21.25772 -20.59621 -20.41113 -18.99179 -17.78346 -17.45357 -17.05161 -16.86881 -16.30183 -16.11176 -15.92820 -15.56908 -15.18583 -14.64456 -14.28518 -14.11180 -13.96389 -13.83575 -13.52924 -13.31894 -13.08425 -13.02689 -12.91094 -12.73482 -12.45940 -12.28677 -12.21285 -12.09409 -11.98804 -11.92999 -11.33981 -11.21825 -10.88328 -10.78802 -10.54929 -10.35427 -10.15540 -9.96311 -9.82579 -9.63465 -9.25348 -8.72033 -8.58297 -8.36923 -6.92965 -5.77089 -3.12467 1.53165 1.75350 2.56062 2.69523 2.79513 3.16975 3.38173 3.43316 3.45529 4.11523 4.33767 4.42668 4.47921 4.64414 4.74001 4.80938 4.87826 4.92146 5.00376 5.10873 5.18173 5.25330 5.32613 5.38333 5.41724 5.48801 5.58989 5.63557 5.67835 5.76588 5.88944 5.92329 6.05253 6.12275 6.35689 6.48139 6.59420 6.86681 7.35039 7.46200 7.49072 7.52083 7.72576 7.93139 8.15813 8.23800 8.28950 9.13275 9.73551 10.36680 11.34349 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021830 B = 0.002504 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.314513 B =11178.054972 C =11541.778405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.272 3.728 3 N -0.270 5.270 4 N -0.437 5.437 5 C 0.146 3.854 6 C 0.499 3.501 7 O -0.522 6.522 8 N -0.599 5.599 9 C 0.071 3.929 10 C 0.135 3.865 11 H 0.113 0.887 12 C 0.134 3.866 13 N -0.599 5.599 14 C -0.230 4.230 15 H 0.081 0.919 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.916 3.084 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.153 3.847 23 C 0.064 3.936 24 H 0.056 0.944 25 O -0.560 6.560 26 C 0.654 3.346 27 O -0.551 6.551 28 N -0.558 5.558 29 C 0.099 3.901 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.027 0.973 40 H 0.254 0.746 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.374 0.626 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.079 -10.148 18.958 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.006 4.006 3 N -0.093 5.093 4 N -0.256 5.256 5 C 0.021 3.979 6 C 0.284 3.716 7 O -0.397 6.397 8 N -0.332 5.332 9 C -0.072 4.072 10 C 0.031 3.969 11 H 0.131 0.869 12 C 0.006 3.994 13 N -0.327 5.327 14 C -0.358 4.358 15 H 0.099 0.901 16 C -0.203 4.203 17 N -0.570 5.570 18 Si 0.746 3.254 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.027 3.973 23 C 0.004 3.996 24 H 0.074 0.926 25 O -0.365 6.365 26 C 0.354 3.646 27 O -0.424 6.424 28 N -0.288 5.288 29 C -0.043 4.043 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.220 0.780 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.128 -9.762 18.405 25.747 hybrid contribution 1.001 -0.006 -0.847 1.311 sum -14.127 -9.768 17.558 24.562 Atomic orbital electron populations 1.20417 0.82912 1.05913 1.04117 1.24165 0.96450 0.81949 0.98048 1.76978 0.87458 1.21059 1.23812 1.48211 1.03716 1.04751 1.68907 1.21285 0.84763 0.95851 0.95989 1.20769 0.80639 0.78872 0.91339 1.90728 1.52797 1.50480 1.45708 1.47704 1.28732 1.49353 1.07445 1.21876 0.97857 0.98787 0.88730 1.22408 0.96024 0.96875 0.81600 0.86887 1.21756 0.94577 0.91199 0.91852 1.44243 1.38717 1.17917 1.31816 1.19070 1.15962 0.94641 1.06149 0.90118 1.24833 0.98401 0.98139 0.98975 1.69939 1.24001 1.29324 1.33705 0.86059 0.77734 0.81384 0.80215 1.21521 1.21606 1.20589 1.21861 0.94818 0.85803 0.94813 1.23574 0.96063 0.82635 0.97360 0.92614 1.86521 1.35285 1.26849 1.87846 1.16613 0.83608 0.83239 0.81160 1.91088 1.34788 1.57971 1.58535 1.45776 1.06612 1.08297 1.68105 1.21794 1.01083 0.77801 1.03654 0.88153 0.89031 0.89178 0.85908 0.85766 0.91823 0.91357 0.90158 0.93356 0.95527 0.93610 0.93347 0.92210 0.77953 0.90842 0.89355 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 9.85 36.01 0.35 0.03 16 2 C 0.27 2.75 7.98 -154.16 -1.23 1.52 16 3 N -0.27 -3.58 12.53 32.97 0.41 -3.17 16 4 N -0.44 -6.50 3.11 -66.32 -0.21 -6.71 16 5 C 0.15 1.90 5.42 -5.20 -0.03 1.87 16 6 C 0.50 8.63 7.74 -10.98 -0.09 8.55 16 7 O -0.52 -11.57 15.81 5.56 0.09 -11.48 16 8 N -0.60 -9.71 2.91 -171.48 -0.50 -10.21 16 9 C 0.07 0.79 8.86 59.85 0.53 1.32 16 10 C 0.13 2.71 3.17 -65.78 -0.21 2.50 16 11 H 0.11 2.68 7.02 -51.93 -0.36 2.32 16 12 C 0.13 2.81 6.79 -2.53 -0.02 2.79 16 13 N -0.60 -15.40 3.39 -170.07 -0.58 -15.98 16 14 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 15 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 16 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 17 N -0.92 -27.01 10.31 55.49 0.57 -26.43 16 18 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.15 3.73 5.14 -3.06 -0.02 3.71 16 23 C 0.06 1.29 3.89 -24.90 -0.10 1.19 16 24 H 0.06 1.00 6.41 -51.93 -0.33 0.67 16 25 O -0.56 -11.26 13.39 -35.23 -0.47 -11.74 16 26 C 0.65 10.33 8.60 -86.73 -0.75 9.58 16 27 O -0.55 -10.38 17.72 5.09 0.09 -10.29 16 28 N -0.56 -6.36 3.14 -125.41 -0.39 -6.75 16 29 C 0.10 0.66 10.85 59.85 0.65 1.31 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.12 1.36 7.37 -51.93 -0.38 0.98 16 34 H 0.12 1.18 8.11 -51.93 -0.42 0.75 16 35 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 36 H 0.07 0.56 6.44 -51.93 -0.33 0.22 16 37 H 0.08 0.94 6.41 -51.93 -0.33 0.61 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.03 0.52 7.01 -51.93 -0.36 0.15 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.05 1.26 7.50 -51.93 -0.39 0.87 16 42 H 0.06 1.66 7.30 -51.93 -0.38 1.28 16 43 H 0.37 5.90 9.11 45.56 0.42 6.31 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16 46 H 0.09 0.24 7.79 -51.93 -0.40 -0.17 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -41.35 380.76 -7.21 -48.55 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.79 Total: 3.86 kcal Atomic # 6 Polarization: 28.66 SS G_CDS: -1.15 Total: 27.51 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -0.69 Total: -69.25 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.29 Total: -33.51 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -41.35 -7.21 -48.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047613145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.218 kcal (2) G-P(sol) polarization free energy of solvation -41.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds