Wall clock time and date at job start Sat Apr 11 2020 05:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39638 * 120.48921 * 5.53747 * 3 2 1 5 5 N 1.31757 * 120.88414 * 180.02562 * 4 3 2 6 6 C 1.31737 * 122.03315 * 359.67452 * 5 4 3 7 7 C 1.39599 * 120.88017 * 0.58936 * 6 5 4 8 8 C 1.47862 * 120.48921 * 179.73022 * 7 6 5 9 9 O 1.21550 * 119.99998 * 319.88034 * 8 7 6 10 10 N 1.34777 * 120.00149 * 139.89144 * 8 7 6 11 11 C 1.46929 * 120.69986 * 174.18776 * 10 8 7 12 12 C 1.53195 * 108.91726 * 125.85074 * 11 10 8 13 13 C 1.53162 * 109.27259 * 55.23350 * 12 11 10 14 14 C 1.52235 * 109.62855 * 299.83788 * 13 12 11 15 15 C 1.54501 * 110.25243 * 297.03879 * 14 13 12 16 16 C 1.55027 * 101.52156 * 276.23463 * 15 14 13 17 17 N 1.47492 * 104.89945 * 323.63961 * 16 15 14 18 18 C 1.36941 * 125.65629 * 204.02706 * 17 16 15 19 19 H 1.08002 * 119.99646 * 179.97438 * 18 17 16 20 20 C 1.38806 * 120.00398 * 359.97438 * 18 17 16 21 21 N 1.31619 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99971 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46957 * 90.00574 * 22 20 18 24 24 H 1.48507 * 109.47110 * 210.00202 * 22 20 18 25 25 H 1.48492 * 109.47262 * 330.00230 * 22 20 18 26 26 C 1.47186 * 108.67768 * 24.01335 * 17 16 15 27 27 C 1.47084 * 120.69908 * 354.20675 * 10 8 7 28 28 C 1.39674 * 120.49222 * 185.55386 * 3 2 1 29 29 H 4.52731 * 13.92950 * 359.97438 * 4 2 1 30 30 H 1.07999 * 119.56090 * 0.02562 * 4 3 2 31 31 H 1.08006 * 119.55821 * 180.31416 * 6 5 4 32 32 H 1.08993 * 109.56680 * 6.01815 * 11 10 8 33 33 H 1.09002 * 109.56287 * 245.68023 * 11 10 8 34 34 H 1.09001 * 109.50271 * 295.29739 * 12 11 10 35 35 H 1.08998 * 109.50201 * 175.17461 * 12 11 10 36 36 H 1.09000 * 109.44141 * 59.88023 * 13 12 11 37 37 H 1.08996 * 109.43964 * 179.79887 * 13 12 11 38 38 H 1.08997 * 111.01008 * 34.28945 * 15 14 13 39 39 H 1.09001 * 111.01421 * 158.17456 * 15 14 13 40 40 H 1.09000 * 110.35540 * 204.78978 * 16 15 14 41 41 H 1.08996 * 110.44744 * 82.54189 * 16 15 14 42 42 H 0.97002 * 120.00398 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.90421 * 239.12779 * 26 17 16 44 44 H 1.08993 * 109.91447 * 117.85835 * 26 17 16 45 45 H 1.09000 * 109.57573 * 352.23364 * 27 10 8 46 46 H 1.09002 * 109.57605 * 112.61908 * 27 10 8 47 47 H 1.08004 * 120.91601 * 359.95360 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3150 -1.1967 -0.1161 5 7 4.6326 -1.2052 -0.1165 6 6 5.3385 -0.0976 -0.0150 7 6 4.7109 1.1430 0.1107 8 6 5.5118 2.3802 0.2300 9 8 6.5205 2.3882 0.9082 10 7 5.1233 3.4992 -0.4131 11 6 5.8335 4.7686 -0.2056 12 6 6.2687 5.3223 -1.5660 13 6 5.0440 5.4435 -2.4778 14 6 4.4118 4.0720 -2.6700 15 6 5.4004 3.1227 -3.3832 16 6 5.1659 3.4920 -4.8705 17 7 3.7205 3.7684 -4.9694 18 6 2.9674 3.6818 -6.1098 19 1 1.9113 3.9053 -6.0777 20 6 3.5614 3.3067 -7.3070 21 7 4.8484 3.0338 -7.3460 22 14 2.5338 3.1879 -8.8625 23 1 2.5367 4.4994 -9.5590 24 1 3.1081 2.1511 -9.7572 25 1 1.1399 2.8188 -8.5079 26 6 3.2219 4.1523 -3.6388 27 6 3.9792 3.4753 -1.3371 28 6 3.3142 1.1989 0.1165 29 1 -1.0500 -0.0011 0.0004 30 1 2.7763 -2.1283 -0.2068 31 1 6.4172 -0.1505 -0.0247 32 1 6.7117 4.5980 0.4169 33 1 5.1703 5.4820 0.2836 34 1 6.9941 4.6464 -2.0189 35 1 6.7208 6.3049 -1.4312 36 1 4.3180 6.1171 -2.0225 37 1 5.3501 5.8407 -3.4455 38 1 6.4276 3.3328 -3.0856 39 1 5.1458 2.0798 -3.1946 40 1 5.4371 2.6566 -5.5159 41 1 5.7406 4.3788 -5.1378 42 1 5.2634 2.7713 -8.1826 43 1 2.4389 3.4630 -3.3228 44 1 2.8343 5.1706 -3.6672 45 1 3.6517 2.4465 -1.4864 46 1 3.1615 4.0641 -0.9213 47 1 2.7969 2.1426 0.2075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054193658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:56 Heat of formation + Delta-G solvation = 92.371682 kcal Electronic energy + Delta-G solvation = -30099.127375 eV Core-core repulsion = 26249.365140 eV Total energy + Delta-G solvation = -3849.762235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.15312 -39.83308 -38.42767 -35.82047 -34.57979 -33.54382 -32.78307 -31.58923 -30.75273 -30.08250 -28.69755 -26.17327 -25.71643 -24.50946 -24.15118 -23.54016 -22.22854 -20.63126 -19.95357 -18.90847 -18.18168 -17.31045 -17.23889 -16.93118 -16.56788 -16.00281 -15.20536 -15.06714 -15.01566 -14.64897 -14.23859 -14.02393 -13.97579 -13.50731 -13.37723 -13.25536 -13.00685 -12.77099 -12.55516 -12.28797 -12.01735 -11.86553 -11.60274 -11.26147 -11.06780 -11.03420 -10.93632 -10.83023 -10.60112 -10.39999 -10.18311 -10.12840 -9.97520 -9.89316 -9.75861 -9.54768 -9.49897 -9.04671 -8.66814 -8.59974 -6.85791 -5.67243 -3.09143 0.36037 0.67933 2.41374 2.47766 2.76187 2.97135 3.37829 3.42803 3.44926 3.70027 3.83791 4.15236 4.34818 4.44384 4.47023 4.54663 4.79301 4.90130 5.00977 5.02314 5.06720 5.19041 5.25083 5.41471 5.46651 5.52383 5.62304 5.63067 5.65908 5.71494 5.74269 5.78480 5.90565 5.97953 6.00529 6.24092 6.25893 6.29244 6.41845 6.46076 6.52350 6.64036 6.75718 6.85283 7.21212 7.25761 7.49933 7.60053 7.60206 7.84264 7.98953 8.34062 9.19684 9.80669 10.45661 11.36405 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009590 B = 0.004124 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.014586 B = 6787.791645 C = 8394.508804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.154 4.154 3 C -0.044 4.044 4 C 0.145 3.855 5 N -0.480 5.480 6 C 0.162 3.838 7 C -0.176 4.176 8 C 0.569 3.431 9 O -0.536 6.536 10 N -0.597 5.597 11 C 0.114 3.886 12 C -0.136 4.136 13 C -0.100 4.100 14 C -0.084 4.084 15 C -0.132 4.132 16 C 0.155 3.845 17 N -0.602 5.602 18 C -0.223 4.223 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.150 3.850 27 C 0.115 3.885 28 C -0.022 4.022 29 H 0.227 0.773 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.103 0.897 41 H 0.012 0.988 42 H 0.252 0.748 43 H 0.022 0.978 44 H 0.024 0.976 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 -1.395 17.179 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.155 4.155 3 C -0.046 4.046 4 C -0.013 4.013 5 N -0.187 5.187 6 C 0.005 3.995 7 C -0.181 4.181 8 C 0.357 3.643 9 O -0.414 6.414 10 N -0.328 5.328 11 C -0.008 4.008 12 C -0.174 4.174 13 C -0.137 4.137 14 C -0.085 4.085 15 C -0.170 4.170 16 C 0.031 3.969 17 N -0.328 5.328 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.023 3.977 27 C -0.008 4.008 28 C -0.048 4.048 29 H 0.244 0.756 30 H 0.183 0.817 31 H 0.186 0.814 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.030 0.970 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.042 0.958 45 H 0.107 0.893 46 H 0.087 0.913 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.381 -2.228 17.238 17.543 hybrid contribution -1.293 0.892 -0.925 1.824 sum -3.675 -1.336 16.312 16.774 Atomic orbital electron populations 1.24934 0.95721 0.98038 0.98469 1.19549 0.91423 1.02452 1.02042 1.16785 0.88195 0.94523 1.05064 1.23163 0.89740 0.97142 0.91245 1.67803 1.07560 1.30285 1.13047 1.23028 1.00945 0.85790 0.89740 1.20858 0.94063 0.96000 1.07152 1.17977 0.84208 0.82569 0.79582 1.90777 1.25134 1.84224 1.41313 1.48015 1.32470 1.08990 1.43366 1.21647 0.97469 0.83769 0.97938 1.22002 0.98936 1.01322 0.95126 1.21353 0.96354 0.95805 1.00231 1.21334 0.97855 0.96026 0.93306 1.23024 0.97205 0.97339 0.99441 1.21915 0.84098 1.00508 0.90403 1.44513 1.05401 1.79700 1.03145 1.19053 0.91754 1.39046 0.85281 0.90571 1.24773 0.96057 1.01940 0.97773 1.69807 1.09160 1.52840 1.25154 0.86099 0.79054 0.77384 0.83118 1.21641 1.21651 1.20718 1.21144 0.93081 0.97164 0.86292 1.22041 0.87261 1.02314 0.89185 1.21948 0.92562 0.98382 0.91870 0.75591 0.81747 0.81376 0.89039 0.91418 0.90857 0.90846 0.92246 0.90645 0.92133 0.92795 0.87886 0.97039 0.93738 0.96054 0.95787 0.89295 0.91287 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 19.25 29.55 0.57 -0.77 16 2 C -0.15 -1.66 13.27 -38.84 -0.52 -2.17 16 3 C -0.04 -0.50 5.73 -106.91 -0.61 -1.12 16 4 C 0.15 1.64 10.91 -17.06 -0.19 1.46 16 5 N -0.48 -6.16 10.33 -12.59 -0.13 -6.29 16 6 C 0.16 2.09 10.80 -17.08 -0.18 1.90 16 7 C -0.18 -2.26 5.13 -104.87 -0.54 -2.80 16 8 C 0.57 8.03 7.35 -12.32 -0.09 7.94 16 9 O -0.54 -8.86 16.36 5.32 0.09 -8.77 16 10 N -0.60 -7.69 2.82 -174.28 -0.49 -8.18 16 11 C 0.11 1.32 6.42 -3.71 -0.02 1.29 16 12 C -0.14 -1.64 5.90 -26.55 -0.16 -1.80 16 13 C -0.10 -1.41 4.55 -27.04 -0.12 -1.53 16 14 C -0.08 -1.33 0.55 -154.12 -0.09 -1.42 16 15 C -0.13 -2.44 5.73 -24.87 -0.14 -2.58 16 16 C 0.16 3.68 5.57 -2.43 -0.01 3.67 16 17 N -0.60 -14.86 3.40 -170.24 -0.58 -15.44 16 18 C -0.22 -6.08 10.28 -15.06 -0.15 -6.24 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -26.62 10.09 55.49 0.56 -26.06 16 22 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 C 0.15 2.92 6.43 -3.33 -0.02 2.90 16 27 C 0.11 1.50 3.43 -4.07 -0.01 1.48 16 28 C -0.02 -0.25 7.24 -38.47 -0.28 -0.53 16 29 H 0.23 1.06 7.80 -54.09 -0.42 0.64 16 30 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.17 1.99 8.06 -52.48 -0.42 1.56 16 32 H 0.09 1.11 7.00 -51.93 -0.36 0.75 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.00 6.22 -51.93 -0.32 0.68 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.24 7.49 -51.93 -0.39 0.85 16 38 H 0.06 1.06 6.00 -51.93 -0.31 0.75 16 39 H 0.05 1.04 7.90 -51.93 -0.41 0.63 16 40 H 0.10 2.81 5.88 -51.93 -0.31 2.51 16 41 H 0.01 0.29 7.76 -51.93 -0.40 -0.11 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.02 0.41 7.80 -51.93 -0.40 0.01 16 44 H 0.02 0.47 7.83 -51.93 -0.41 0.06 16 45 H 0.09 1.21 4.65 -51.93 -0.24 0.97 16 46 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 47 H 0.15 1.49 6.61 -52.48 -0.35 1.15 16 LS Contribution 375.63 15.07 5.66 5.66 Total: -1.00 -32.20 375.63 -8.99 -41.19 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.41 Total: 1.77 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.67 Total: -0.69 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.64 Total: -55.97 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.20 -8.99 -41.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054193658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.561 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds