Wall clock time and date at job start Sat Apr 11 2020 05:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39638 * 120.48921 * 5.53747 * 3 2 1 5 5 N 1.31757 * 120.88414 * 180.02562 * 4 3 2 6 6 C 1.31737 * 122.03315 * 359.67452 * 5 4 3 7 7 C 1.39599 * 120.88017 * 0.58936 * 6 5 4 8 8 C 1.47862 * 120.48921 * 179.73022 * 7 6 5 9 9 O 1.21550 * 119.99998 * 319.88034 * 8 7 6 10 10 N 1.34777 * 120.00149 * 139.89144 * 8 7 6 11 11 C 1.46929 * 120.69986 * 174.18776 * 10 8 7 12 12 C 1.53195 * 108.91726 * 125.85074 * 11 10 8 13 13 C 1.53162 * 109.27259 * 55.23350 * 12 11 10 14 14 C 1.52235 * 109.62855 * 299.83788 * 13 12 11 15 15 C 1.54501 * 110.25243 * 297.03879 * 14 13 12 16 16 C 1.55027 * 101.52156 * 276.23463 * 15 14 13 17 17 N 1.47492 * 104.89945 * 323.63961 * 16 15 14 18 18 C 1.36941 * 125.65629 * 204.02706 * 17 16 15 19 19 H 1.08002 * 119.99646 * 179.97438 * 18 17 16 20 20 C 1.38806 * 120.00398 * 359.97438 * 18 17 16 21 21 N 1.31619 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99971 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46957 * 90.00574 * 22 20 18 24 24 H 1.48507 * 109.47110 * 210.00202 * 22 20 18 25 25 H 1.48492 * 109.47262 * 330.00230 * 22 20 18 26 26 C 1.47186 * 108.67768 * 24.01335 * 17 16 15 27 27 C 1.47084 * 120.69908 * 354.20675 * 10 8 7 28 28 C 1.39674 * 120.49222 * 185.55386 * 3 2 1 29 29 H 4.52731 * 13.92950 * 359.97438 * 4 2 1 30 30 H 1.07999 * 119.56090 * 0.02562 * 4 3 2 31 31 H 1.08006 * 119.55821 * 180.31416 * 6 5 4 32 32 H 1.08993 * 109.56680 * 6.01815 * 11 10 8 33 33 H 1.09002 * 109.56287 * 245.68023 * 11 10 8 34 34 H 1.09001 * 109.50271 * 295.29739 * 12 11 10 35 35 H 1.08998 * 109.50201 * 175.17461 * 12 11 10 36 36 H 1.09000 * 109.44141 * 59.88023 * 13 12 11 37 37 H 1.08996 * 109.43964 * 179.79887 * 13 12 11 38 38 H 1.08997 * 111.01008 * 34.28945 * 15 14 13 39 39 H 1.09001 * 111.01421 * 158.17456 * 15 14 13 40 40 H 1.09000 * 110.35540 * 204.78978 * 16 15 14 41 41 H 1.08996 * 110.44744 * 82.54189 * 16 15 14 42 42 H 0.97002 * 120.00398 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.90421 * 239.12779 * 26 17 16 44 44 H 1.08993 * 109.91447 * 117.85835 * 26 17 16 45 45 H 1.09000 * 109.57573 * 352.23364 * 27 10 8 46 46 H 1.09002 * 109.57605 * 112.61908 * 27 10 8 47 47 H 1.08004 * 120.91601 * 359.95360 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3150 -1.1967 -0.1161 5 7 4.6326 -1.2052 -0.1165 6 6 5.3385 -0.0976 -0.0150 7 6 4.7109 1.1430 0.1107 8 6 5.5118 2.3802 0.2300 9 8 6.5205 2.3882 0.9082 10 7 5.1233 3.4992 -0.4131 11 6 5.8335 4.7686 -0.2056 12 6 6.2687 5.3223 -1.5660 13 6 5.0440 5.4435 -2.4778 14 6 4.4118 4.0720 -2.6700 15 6 5.4004 3.1227 -3.3832 16 6 5.1659 3.4920 -4.8705 17 7 3.7205 3.7684 -4.9694 18 6 2.9674 3.6818 -6.1098 19 1 1.9113 3.9053 -6.0777 20 6 3.5614 3.3067 -7.3070 21 7 4.8484 3.0338 -7.3460 22 14 2.5338 3.1879 -8.8625 23 1 2.5367 4.4994 -9.5590 24 1 3.1081 2.1511 -9.7572 25 1 1.1399 2.8188 -8.5079 26 6 3.2219 4.1523 -3.6388 27 6 3.9792 3.4753 -1.3371 28 6 3.3142 1.1989 0.1165 29 1 -1.0500 -0.0011 0.0004 30 1 2.7763 -2.1283 -0.2068 31 1 6.4172 -0.1505 -0.0247 32 1 6.7117 4.5980 0.4169 33 1 5.1703 5.4820 0.2836 34 1 6.9941 4.6464 -2.0189 35 1 6.7208 6.3049 -1.4312 36 1 4.3180 6.1171 -2.0225 37 1 5.3501 5.8407 -3.4455 38 1 6.4276 3.3328 -3.0856 39 1 5.1458 2.0798 -3.1946 40 1 5.4371 2.6566 -5.5159 41 1 5.7406 4.3788 -5.1378 42 1 5.2634 2.7713 -8.1826 43 1 2.4389 3.4630 -3.3228 44 1 2.8343 5.1706 -3.6672 45 1 3.6517 2.4465 -1.4864 46 1 3.1615 4.0641 -0.9213 47 1 2.7969 2.1426 0.2075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054193658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:56 Heat of formation + Delta-G solvation = 73.896917 kcal Electronic energy + Delta-G solvation = -30099.928501 eV Core-core repulsion = 26249.365140 eV Total energy + Delta-G solvation = -3850.563361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.18736 -40.91871 -39.69833 -37.26071 -35.39313 -34.77038 -34.26811 -32.69884 -31.72817 -31.55423 -30.39011 -27.43316 -27.16630 -25.53141 -25.34254 -24.87596 -23.33821 -22.14622 -21.26168 -20.01146 -19.35820 -18.71047 -18.26780 -18.06751 -17.65814 -17.05358 -16.85274 -16.35407 -16.20837 -15.82037 -15.63846 -15.13580 -15.04225 -14.75751 -14.65384 -14.39988 -14.16185 -14.12219 -13.78781 -13.59329 -13.42239 -13.18125 -12.92712 -12.78439 -12.67108 -12.44243 -12.22165 -12.08771 -11.90960 -11.81188 -11.68280 -11.58848 -11.41505 -11.27315 -11.18504 -10.78990 -10.73094 -10.53103 -9.90617 -9.66424 -8.87008 -7.76454 -5.20294 -0.53816 -0.20730 1.45201 1.46566 1.47804 1.56422 1.68531 1.82401 2.08347 2.49916 2.83791 3.02827 3.29115 3.33218 3.42147 3.54926 3.63375 3.66722 3.69520 3.72455 3.95139 4.10404 4.14269 4.23430 4.29252 4.35574 4.37373 4.51057 4.59131 4.64382 4.73736 4.78142 4.81400 4.84738 4.88568 4.94442 4.99143 5.02874 5.15420 5.17877 5.37709 5.42715 5.45062 5.47840 5.51839 5.62351 5.82286 6.19210 6.30751 6.52043 6.70035 6.93053 7.11127 7.79807 8.44065 9.25518 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009590 B = 0.004124 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.014586 B = 6787.791645 C = 8394.508804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.206 4.206 3 C -0.043 4.043 4 C 0.139 3.861 5 N -0.496 5.496 6 C 0.148 3.852 7 C -0.186 4.186 8 C 0.570 3.430 9 O -0.566 6.566 10 N -0.593 5.593 11 C 0.114 3.886 12 C -0.128 4.128 13 C -0.096 4.096 14 C -0.071 4.071 15 C -0.116 4.116 16 C 0.163 3.837 17 N -0.623 5.623 18 C -0.233 4.233 19 H 0.084 0.916 20 C -0.069 4.069 21 N -0.951 5.951 22 Si 0.977 3.023 23 H -0.287 1.287 24 H -0.297 1.297 25 H -0.267 1.267 26 C 0.145 3.855 27 C 0.122 3.878 28 C -0.022 4.022 29 H 0.264 0.736 30 H 0.187 0.813 31 H 0.169 0.831 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.062 0.938 41 H -0.014 1.014 42 H 0.245 0.755 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 -0.506 18.903 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.207 4.207 3 C -0.045 4.045 4 C -0.019 4.019 5 N -0.204 5.204 6 C -0.009 4.009 7 C -0.191 4.191 8 C 0.359 3.641 9 O -0.446 6.446 10 N -0.324 5.324 11 C -0.008 4.008 12 C -0.166 4.166 13 C -0.134 4.134 14 C -0.072 4.072 15 C -0.154 4.154 16 C 0.037 3.963 17 N -0.349 5.349 18 C -0.363 4.363 19 H 0.101 0.899 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.805 3.195 23 H -0.214 1.214 24 H -0.224 1.224 25 H -0.192 1.192 26 C 0.020 3.980 27 C 0.000 4.000 28 C -0.047 4.047 29 H 0.280 0.720 30 H 0.204 0.796 31 H 0.186 0.814 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.004 0.996 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.102 0.898 46 H 0.121 0.879 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.069 -1.317 18.988 19.697 hybrid contribution -0.561 0.610 -1.467 1.685 sum -5.630 -0.707 17.522 18.418 Atomic orbital electron populations 1.25857 0.96428 0.95536 0.95620 1.19735 0.91736 1.04814 1.04368 1.16921 0.89102 0.94364 1.04111 1.23581 0.89374 0.98336 0.90612 1.67809 1.08453 1.30380 1.13719 1.23103 1.01219 0.86164 0.90442 1.20801 0.94673 0.95422 1.08188 1.18117 0.83810 0.82992 0.79218 1.90759 1.26410 1.84664 1.42756 1.48047 1.32366 1.09236 1.42738 1.21788 0.97989 0.83547 0.97446 1.21939 0.97518 1.02321 0.94795 1.21323 0.97751 0.94784 0.99523 1.21248 0.95501 0.96604 0.93851 1.22793 0.98758 0.97578 0.96269 1.21599 0.83904 0.97735 0.93014 1.44789 1.05628 1.79889 1.04578 1.19462 0.92385 1.38004 0.86405 0.89864 1.25607 0.97145 1.02475 1.00854 1.70083 1.10724 1.54123 1.25198 0.85094 0.78155 0.76929 0.79284 1.21433 1.22365 1.19166 1.21353 0.94595 0.97445 0.84621 1.21978 0.88001 1.02444 0.87612 1.22119 0.91961 0.99269 0.91387 0.72036 0.79581 0.81396 0.89513 0.88398 0.92985 0.88316 0.89552 0.93550 0.91233 0.93636 0.91972 0.99627 0.94572 0.95151 0.94927 0.89764 0.87877 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 19.25 74.32 1.43 -0.19 16 2 C -0.21 -3.96 13.27 30.02 0.40 -3.56 16 3 C -0.04 -0.94 5.73 -21.35 -0.12 -1.06 16 4 C 0.14 3.06 10.91 85.04 0.93 3.98 16 5 N -0.50 -12.82 10.33 -193.75 -2.00 -14.82 16 6 C 0.15 3.87 10.80 85.04 0.92 4.79 16 7 C -0.19 -4.69 5.13 -20.03 -0.10 -4.79 16 8 C 0.57 15.53 7.35 86.79 0.64 16.16 16 9 O -0.57 -18.47 16.36 -3.87 -0.06 -18.54 16 10 N -0.59 -13.95 2.82 -823.57 -2.33 -16.28 16 11 C 0.11 2.29 6.42 86.36 0.55 2.85 16 12 C -0.13 -2.80 5.90 30.71 0.18 -2.62 16 13 C -0.10 -2.51 4.55 30.40 0.14 -2.38 16 14 C -0.07 -2.14 0.55 -51.93 -0.03 -2.16 16 15 C -0.12 -4.34 5.73 31.80 0.18 -4.16 16 16 C 0.16 8.04 5.57 86.88 0.48 8.52 16 17 N -0.62 -31.15 3.40 -692.50 -2.36 -33.51 16 18 C -0.23 -12.84 10.28 84.03 0.86 -11.98 16 19 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 20 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 21 N -0.95 -57.20 10.09 21.65 0.22 -56.98 16 22 Si 0.98 45.43 29.55 68.60 2.03 47.46 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 C 0.15 5.46 6.43 86.47 0.56 6.01 16 27 C 0.12 2.85 3.43 86.04 0.30 3.15 16 28 C -0.02 -0.47 7.24 22.99 0.17 -0.31 16 29 H 0.26 1.19 7.80 -4.42 -0.03 1.15 16 30 H 0.19 3.05 8.06 -2.91 -0.02 3.02 16 31 H 0.17 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.09 1.91 7.00 -2.39 -0.02 1.90 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.05 1.37 6.22 -2.39 -0.01 1.36 16 35 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.50 7.49 -2.39 -0.02 1.48 16 38 H 0.07 2.48 6.00 -2.39 -0.01 2.47 16 39 H 0.04 1.78 7.90 -2.39 -0.02 1.76 16 40 H 0.06 3.60 5.88 -2.39 -0.01 3.58 16 41 H -0.01 -0.76 7.76 -2.39 -0.02 -0.78 16 42 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 43 H 0.03 1.10 7.80 -2.39 -0.02 1.08 16 44 H 0.03 1.19 7.83 -2.39 -0.02 1.17 16 45 H 0.08 2.12 4.65 -2.39 -0.01 2.11 16 46 H 0.10 1.81 8.10 -2.39 -0.02 1.79 16 47 H 0.16 2.88 6.61 -2.91 -0.02 2.86 16 Total: -1.00 -72.96 375.63 4.43 -68.53 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.99 Total: 15.28 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 7.95 Total: 8.85 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -6.47 Total: -121.58 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.06 Total: -18.54 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -72.96 4.43 -68.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054193658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.428 kcal (2) G-P(sol) polarization free energy of solvation -72.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds