Wall clock time and date at job start Sat Apr 11 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39726 * 119.58695 * 194.78568 * 3 2 1 5 5 C 1.37973 * 119.19924 * 179.97438 * 4 3 2 6 6 C 1.40248 * 118.39935 * 359.97438 * 5 4 3 7 7 C 1.47674 * 120.43685 * 180.02562 * 6 5 4 8 8 O 1.21578 * 119.99842 * 140.04019 * 7 6 5 9 9 N 1.34773 * 120.00221 * 320.03387 * 7 6 5 10 10 C 1.46937 * 120.70000 * 174.19177 * 9 7 6 11 11 C 1.53194 * 108.91572 * 125.81325 * 10 9 7 12 12 C 1.53159 * 109.27545 * 55.23923 * 11 10 9 13 13 C 1.52246 * 109.62478 * 299.83878 * 12 11 10 14 14 C 1.54505 * 110.24713 * 297.03443 * 13 12 11 15 15 C 1.55021 * 101.52526 * 276.23367 * 14 13 12 16 16 N 1.47482 * 104.90426 * 323.64811 * 15 14 13 17 17 C 1.36939 * 125.66270 * 204.02875 * 16 15 14 18 18 H 1.07994 * 120.00130 * 179.97438 * 17 16 15 19 19 C 1.38810 * 119.99578 * 359.97250 * 17 16 15 20 20 N 1.31622 * 120.00535 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99656 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47113 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47150 * 119.99815 * 21 19 17 24 24 H 1.48504 * 109.47049 * 239.99735 * 21 19 17 25 25 C 1.47194 * 108.67889 * 24.00144 * 16 15 14 26 26 C 1.47077 * 120.70275 * 354.17448 * 9 7 6 27 27 C 1.39654 * 119.11657 * 0.27517 * 6 5 4 28 28 N 1.31484 * 120.71291 * 359.43035 * 27 6 5 29 29 H 4.51259 * 14.17525 * 359.97438 * 4 2 1 30 30 H 1.07996 * 120.40273 * 359.97438 * 4 3 2 31 31 H 1.07999 * 120.80357 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.56209 * 5.97942 * 10 9 7 33 33 H 1.08998 * 109.56573 * 245.64200 * 10 9 7 34 34 H 1.08998 * 109.50278 * 295.29292 * 11 10 9 35 35 H 1.09002 * 109.49957 * 175.17703 * 11 10 9 36 36 H 1.09002 * 109.43991 * 59.87210 * 12 11 10 37 37 H 1.08998 * 109.44132 * 179.80119 * 12 11 10 38 38 H 1.09001 * 111.01596 * 34.29924 * 14 13 12 39 39 H 1.09001 * 111.01388 * 158.17328 * 14 13 12 40 40 H 1.09001 * 110.35571 * 204.78528 * 15 14 13 41 41 H 1.09000 * 110.44348 * 82.54662 * 15 14 13 42 42 H 0.96993 * 120.00181 * 180.02562 * 20 19 17 43 43 H 1.08994 * 109.91421 * 239.13654 * 25 16 15 44 44 H 1.08997 * 109.90906 * 117.85720 * 25 16 15 45 45 H 1.09000 * 109.57570 * 352.27155 * 26 9 7 46 46 H 1.09006 * 109.57694 * 112.65451 * 26 9 7 47 47 H 1.08003 * 119.63863 * 179.70596 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2954 1.1758 0.3101 5 6 4.6751 1.1672 0.3082 6 6 5.3343 -0.0299 -0.0067 7 6 6.8098 -0.0900 -0.0215 8 8 7.3828 -1.0667 0.4209 9 7 7.5210 0.9378 -0.5255 10 6 8.9875 0.9518 -0.4335 11 6 9.5712 1.1486 -1.8362 12 6 8.9809 2.4188 -2.4558 13 6 7.4675 2.2844 -2.5532 14 6 7.0937 1.1189 -3.4962 15 6 7.1699 1.8063 -4.8835 16 7 6.6680 3.1745 -4.6570 17 6 6.1188 3.9913 -5.6092 18 1 5.7793 4.9808 -5.3411 19 6 5.9986 3.5473 -6.9188 20 7 6.4129 2.3415 -7.2457 21 14 5.2502 4.6618 -8.2178 22 1 4.8686 5.9565 -7.5990 23 1 6.2432 4.9024 -9.2954 24 1 4.0443 4.0124 -8.7920 25 6 6.8547 3.5162 -3.2375 26 6 6.8459 2.0690 -1.1796 27 6 4.5769 -1.1630 -0.3112 28 7 3.2629 -1.1171 -0.2935 29 1 -1.0500 -0.0009 -0.0008 30 1 2.7549 2.0799 0.5483 31 1 5.2340 2.0609 0.5436 32 1 9.3364 0.0045 -0.0225 33 1 9.3049 1.7706 0.2121 34 1 9.3205 0.2896 -2.4585 35 1 10.6548 1.2462 -1.7689 36 1 9.2294 3.2766 -1.8309 37 1 9.3971 2.5634 -3.4528 38 1 7.8182 0.3079 -3.4214 39 1 6.0849 0.7597 -3.2927 40 1 6.5366 1.2840 -5.6007 41 1 8.2001 1.8344 -5.2385 42 1 6.3292 2.0314 -8.1609 43 1 5.8928 3.7531 -2.7830 44 1 7.5309 4.3662 -3.1462 45 1 5.7845 1.8468 -1.2895 46 1 6.9721 2.9681 -0.5762 47 1 5.0758 -2.0881 -0.5596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054230574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:07 Heat of formation + Delta-G solvation = 75.749593 kcal Electronic energy + Delta-G solvation = -29906.425389 eV Core-core repulsion = 26055.942366 eV Total energy + Delta-G solvation = -3850.483023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.15501 -40.91443 -39.68659 -37.23780 -35.16688 -34.67514 -34.13639 -33.01688 -31.88439 -31.51677 -30.37627 -27.42465 -27.23455 -25.55776 -25.34319 -24.75579 -23.20963 -22.04111 -21.04365 -20.47161 -19.63618 -18.82247 -18.42546 -17.72666 -17.31077 -16.91061 -16.85367 -16.33823 -16.18607 -15.69980 -15.58720 -15.19728 -15.09558 -14.75167 -14.64275 -14.41096 -14.17892 -14.10091 -13.79036 -13.60500 -13.42976 -13.16039 -12.90799 -12.82538 -12.47795 -12.27410 -12.20197 -12.04292 -11.90019 -11.88045 -11.67428 -11.56126 -11.32248 -11.23552 -11.17935 -10.87899 -10.73831 -10.61690 -9.97382 -9.62463 -8.86100 -7.76197 -5.19853 -0.70410 0.08438 1.36839 1.46592 1.46984 1.57281 1.60912 1.76687 2.06985 2.50162 2.86428 2.91063 3.26163 3.34064 3.56710 3.60450 3.67132 3.71104 3.75775 3.92902 3.95511 4.06774 4.12311 4.26325 4.34647 4.39467 4.53547 4.54007 4.61596 4.65310 4.68928 4.80705 4.84032 4.87986 4.90763 4.96263 4.99702 5.02020 5.17705 5.20123 5.40047 5.44647 5.47023 5.49614 5.54391 5.62993 5.82922 6.22603 6.31279 6.44203 6.67375 6.96251 7.11591 7.80641 8.44782 9.26026 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008963 B = 0.004099 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.304481 B = 6829.881063 C = 9134.632682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.218 4.218 3 C 0.229 3.771 4 C -0.145 4.145 5 C -0.031 4.031 6 C -0.187 4.187 7 C 0.570 3.430 8 O -0.569 6.569 9 N -0.592 5.592 10 C 0.114 3.886 11 C -0.128 4.128 12 C -0.096 4.096 13 C -0.072 4.072 14 C -0.116 4.116 15 C 0.162 3.838 16 N -0.624 5.624 17 C -0.231 4.231 18 H 0.086 0.914 19 C -0.070 4.070 20 N -0.952 5.952 21 Si 0.976 3.024 22 H -0.262 1.262 23 H -0.295 1.295 24 H -0.295 1.295 25 C 0.145 3.855 26 C 0.120 3.880 27 C 0.147 3.853 28 N -0.501 5.501 29 H 0.273 0.727 30 H 0.177 0.823 31 H 0.180 0.820 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.061 0.939 41 H -0.016 1.016 42 H 0.244 0.756 43 H 0.036 0.964 44 H 0.033 0.967 45 H 0.088 0.912 46 H 0.110 0.890 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.971 0.471 19.780 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.218 4.218 3 C 0.094 3.906 4 C -0.165 4.165 5 C -0.057 4.057 6 C -0.192 4.192 7 C 0.358 3.642 8 O -0.450 6.450 9 N -0.323 5.323 10 C -0.007 4.007 11 C -0.166 4.166 12 C -0.134 4.134 13 C -0.073 4.073 14 C -0.154 4.154 15 C 0.037 3.963 16 N -0.350 5.350 17 C -0.361 4.361 18 H 0.103 0.897 19 C -0.262 4.262 20 N -0.602 5.602 21 Si 0.805 3.195 22 H -0.187 1.187 23 H -0.222 1.222 24 H -0.222 1.222 25 C 0.019 3.981 26 C -0.002 4.002 27 C -0.012 4.012 28 N -0.210 5.210 29 H 0.289 0.711 30 H 0.194 0.806 31 H 0.197 0.803 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.002 0.998 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.106 0.894 46 H 0.128 0.872 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.134 -0.751 19.630 19.893 hybrid contribution 0.138 0.725 -1.428 1.608 sum -2.996 -0.025 18.202 18.447 Atomic orbital electron populations 1.26002 0.96349 0.95007 0.93359 1.19704 0.91697 1.04887 1.05548 1.17183 0.89269 0.89909 0.94219 1.22311 0.94441 0.99314 1.00419 1.22141 0.94374 0.97100 0.92082 1.21011 0.94302 0.96847 1.07028 1.18103 0.86524 0.82037 0.77515 1.90767 1.72117 1.32613 1.49501 1.48042 1.07910 1.20543 1.55790 1.21774 0.77505 1.04032 0.97416 1.21939 1.01385 0.97581 0.95735 1.21324 0.92537 0.98694 1.00803 1.21266 0.96835 0.94886 0.94287 1.22786 0.99480 0.97029 0.96123 1.21588 0.95167 0.85384 0.94161 1.44810 1.71400 1.13853 1.04937 1.19521 1.31292 0.96477 0.88767 0.89666 1.25608 1.02731 0.98438 0.99408 1.70096 1.54091 1.18689 1.17357 0.85035 0.77118 0.78403 0.78973 1.18651 1.22233 1.22231 1.21379 0.97499 0.95108 0.84065 1.22042 0.96915 0.89458 0.91814 1.22882 0.88191 0.97894 0.92254 1.67782 1.09925 1.28509 1.14744 0.71123 0.80560 0.80327 0.89759 0.88177 0.93226 0.88453 0.89354 0.93754 0.91477 0.93672 0.92120 0.99760 0.94646 0.94637 0.94855 0.89370 0.87161 0.81647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 19.25 74.32 1.43 0.07 16 2 C -0.22 -4.95 13.43 30.01 0.40 -4.55 16 3 C 0.23 5.86 6.59 40.58 0.27 6.13 16 4 C -0.15 -2.82 9.77 22.57 0.22 -2.60 16 5 C -0.03 -0.60 7.51 22.70 0.17 -0.43 16 6 C -0.19 -4.65 5.13 -19.95 -0.10 -4.75 16 7 C 0.57 15.26 7.34 86.74 0.64 15.90 16 8 O -0.57 -18.71 16.36 -3.96 -0.06 -18.78 16 9 N -0.59 -13.36 2.82 -823.78 -2.33 -15.69 16 10 C 0.11 2.24 6.42 86.36 0.55 2.80 16 11 C -0.13 -2.79 5.90 30.71 0.18 -2.61 16 12 C -0.10 -2.45 4.55 30.40 0.14 -2.32 16 13 C -0.07 -2.09 0.55 -51.93 -0.03 -2.12 16 14 C -0.12 -4.33 5.73 31.80 0.18 -4.15 16 15 C 0.16 8.02 5.57 86.88 0.48 8.50 16 16 N -0.62 -30.95 3.40 -692.52 -2.36 -33.31 16 17 C -0.23 -12.65 10.28 84.03 0.86 -11.79 16 18 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 19 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 20 N -0.95 -57.39 10.09 21.65 0.22 -57.17 16 21 Si 0.98 45.42 29.55 68.60 2.03 47.44 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 C 0.14 5.28 6.43 86.47 0.56 5.83 16 26 C 0.12 2.59 3.43 86.04 0.30 2.88 16 27 C 0.15 4.10 10.80 85.09 0.92 5.02 16 28 N -0.50 -14.77 10.26 -188.04 -1.93 -16.70 16 29 H 0.27 1.22 7.80 -4.42 -0.03 1.19 16 30 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.18 2.21 6.62 -2.91 -0.02 2.19 16 32 H 0.08 1.85 7.00 -2.39 -0.02 1.83 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.32 6.22 -2.39 -0.01 1.30 16 35 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.04 1.42 7.49 -2.39 -0.02 1.40 16 38 H 0.07 2.41 6.00 -2.39 -0.01 2.40 16 39 H 0.04 1.76 7.90 -2.39 -0.02 1.74 16 40 H 0.06 3.53 5.88 -2.39 -0.01 3.51 16 41 H -0.02 -0.83 7.76 -2.39 -0.02 -0.85 16 42 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.04 1.22 7.80 -2.39 -0.02 1.20 16 44 H 0.03 1.18 7.83 -2.39 -0.02 1.16 16 45 H 0.09 2.00 4.66 -2.39 -0.01 1.99 16 46 H 0.11 1.63 8.10 -2.38 -0.02 1.61 16 47 H 0.17 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -76.77 375.71 4.19 -72.58 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.99 Total: 13.27 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 7.64 Total: 8.35 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -6.39 Total: -122.87 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.06 Total: -18.78 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -76.77 4.19 -72.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054230574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.328 kcal (2) G-P(sol) polarization free energy of solvation -76.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds