Wall clock time and date at job start Sat Apr 11 2020 05:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.58740 * 2 1 4 4 C 1.53185 * 109.58832 * 120.43111 * 2 1 3 5 5 C 1.53046 * 109.31641 * 174.42050 * 4 2 1 6 6 C 1.53035 * 109.53710 * 298.63699 * 5 4 2 7 7 H 1.09000 * 109.50027 * 301.41401 * 6 5 4 8 8 N 1.46495 * 109.49701 * 181.31087 * 6 5 4 9 9 C 1.34787 * 119.99872 * 155.15808 * 8 6 5 10 10 O 1.21563 * 119.99737 * 0.02562 * 9 8 6 11 11 C 1.47750 * 119.99760 * 180.02562 * 9 8 6 12 12 C 1.40597 * 120.27409 * 359.72591 * 11 9 8 13 13 N 1.30793 * 121.54088 * 179.75941 * 12 11 9 14 14 C 1.33822 * 121.71848 * 0.49907 * 13 12 11 15 15 C 1.40524 * 120.81407 * 179.72568 * 14 13 12 16 16 C 1.36129 * 119.81753 * 180.02562 * 15 14 13 17 17 C 1.39343 * 121.08570 * 359.97438 * 16 15 14 18 18 C 1.36144 * 120.83535 * 0.02562 * 17 16 15 19 19 C 1.40547 * 119.61977 * 0.02562 * 18 17 16 20 20 C 1.39016 * 120.26664 * 180.02562 * 11 9 8 21 21 C 1.53196 * 109.31200 * 61.36048 * 6 5 4 22 22 N 1.46918 * 108.77857 * 305.36370 * 21 6 5 23 23 C 1.36932 * 120.63514 * 233.58850 * 22 21 6 24 24 H 1.08002 * 120.00789 * 150.17887 * 23 22 21 25 25 C 1.38822 * 119.99700 * 330.17441 * 23 22 21 26 26 N 1.31620 * 119.99894 * 344.49622 * 25 23 22 27 27 Si 1.86801 * 119.99668 * 164.49562 * 25 23 22 28 28 H 1.48502 * 109.47029 * 60.00488 * 27 25 23 29 29 H 1.48504 * 109.46699 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47482 * 300.00186 * 27 25 23 31 31 H 1.08994 * 109.47201 * 180.27787 * 1 2 3 32 32 H 1.09006 * 109.47041 * 300.28207 * 1 2 3 33 33 H 1.09001 * 109.47232 * 60.27757 * 1 2 3 34 34 H 1.09004 * 109.49897 * 294.37430 * 4 2 1 35 35 H 1.08999 * 109.49834 * 54.47039 * 4 2 1 36 36 H 1.08999 * 109.45984 * 178.61509 * 5 4 2 37 37 H 1.09004 * 109.44459 * 58.64483 * 5 4 2 38 38 H 0.96995 * 120.00557 * 335.16288 * 8 6 5 39 39 H 1.08008 * 119.22795 * 359.97438 * 12 11 9 40 40 H 1.08005 * 120.09140 * 0.03282 * 15 14 13 41 41 H 1.08000 * 119.45565 * 180.02562 * 16 15 14 42 42 H 1.07993 * 119.57824 * 180.02562 * 17 16 15 43 43 H 1.07993 * 120.19120 * 180.02562 * 18 17 16 44 44 H 1.08003 * 121.01642 * 359.97438 * 20 11 9 45 45 H 1.09002 * 109.58341 * 185.57624 * 21 6 5 46 46 H 1.08999 * 109.58437 * 65.15322 * 21 6 5 47 47 H 0.96997 * 119.99522 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 6 3.9569 -1.6656 -0.0657 7 1 3.4983 -2.6528 -0.0088 8 7 5.4142 -1.8051 -0.1200 9 6 5.9677 -2.8454 -0.7743 10 8 5.2576 -3.6676 -1.3197 11 6 7.4375 -2.9864 -0.8285 12 6 8.2642 -2.0356 -0.2046 13 7 9.5678 -2.1386 -0.2331 14 6 10.1802 -3.1470 -0.8649 15 6 11.5824 -3.2359 -0.8884 16 6 12.1842 -4.2701 -1.5376 17 6 11.4322 -5.2494 -2.1834 18 6 10.0717 -5.1979 -2.1829 19 6 9.4167 -4.1437 -1.5234 20 6 8.0143 -4.0568 -1.5023 21 6 3.4650 -0.9452 -1.3250 22 7 2.0225 -0.6980 -1.1954 23 6 1.1537 -1.1098 -2.1704 24 1 0.1396 -1.3771 -1.9124 25 6 1.5763 -1.1836 -3.4907 26 7 2.6871 -0.5823 -3.8606 27 14 0.5684 -2.1364 -4.7420 28 1 -0.7920 -1.5479 -4.8332 29 1 1.2300 -2.0630 -6.0695 30 1 0.4664 -3.5559 -4.3181 31 1 -0.3633 -1.0276 0.0050 32 1 -0.3633 0.5182 0.8875 33 1 -0.3634 0.5095 -0.8925 34 1 1.7660 -0.1696 2.1366 35 1 1.6030 -1.7270 1.2890 36 1 3.9378 -1.3476 2.0650 37 1 4.0060 0.1460 1.0993 38 1 5.9808 -1.1489 0.3150 39 1 7.8122 -1.2026 0.3134 40 1 12.1810 -2.4859 -0.3927 41 1 13.2623 -4.3329 -1.5517 42 1 11.9349 -6.0594 -2.6907 43 1 9.4991 -5.9627 -2.6863 44 1 7.4033 -4.7993 -1.9941 45 1 3.6518 -1.5688 -2.1992 46 1 3.9902 0.0039 -1.4317 47 1 2.9826 -0.6342 -4.7831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071849981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:33 Heat of formation + Delta-G solvation = 38.821147 kcal Electronic energy + Delta-G solvation = -28924.449047 eV Core-core repulsion = 25072.364687 eV Total energy + Delta-G solvation = -3852.084360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.09093 -39.44972 -37.72840 -36.99077 -34.52472 -33.58060 -32.82560 -31.47172 -30.32676 -30.14577 -29.75576 -26.22821 -25.18842 -24.33489 -24.17489 -22.30302 -22.28213 -21.13309 -20.30643 -19.36193 -18.29621 -17.86131 -17.26323 -16.38311 -15.96453 -15.52164 -15.06365 -14.80396 -14.77333 -14.39557 -14.08209 -13.98576 -13.78580 -13.67186 -13.55955 -13.35610 -13.18118 -12.74202 -12.39600 -12.04098 -12.00510 -11.86899 -11.71162 -11.45937 -11.11553 -10.89651 -10.69971 -10.67324 -10.52956 -10.40806 -10.26744 -10.11551 -9.94656 -9.69010 -9.46095 -9.36387 -9.03813 -8.61367 -8.48242 -8.40288 -6.59457 -5.72924 -3.17642 0.06184 0.42236 1.68464 2.44749 3.30927 3.39828 3.44163 3.49422 3.51381 3.95544 3.98913 4.34805 4.51238 4.54562 4.61454 4.63835 4.82862 4.88781 5.01600 5.17685 5.33882 5.37301 5.47380 5.53493 5.57140 5.65114 5.66459 5.72392 5.82402 5.96716 6.05173 6.10412 6.13552 6.24766 6.27715 6.30855 6.39721 6.45527 6.48969 6.53508 6.63112 6.73239 6.88860 7.05615 7.13614 7.31450 7.63470 7.73428 7.81805 7.88615 8.49310 8.53622 9.25815 9.90074 10.45696 11.35225 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.002861 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.150978 B = 9785.008206 C =11153.962610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.116 3.884 7 H 0.084 0.916 8 N -0.713 5.713 9 C 0.558 3.442 10 O -0.525 6.525 11 C -0.183 4.183 12 C 0.163 3.837 13 N -0.478 5.478 14 C 0.139 3.861 15 C -0.098 4.098 16 C -0.095 4.095 17 C -0.123 4.123 18 C -0.084 4.084 19 C -0.112 4.112 20 C 0.009 3.991 21 C 0.169 3.831 22 N -0.583 5.583 23 C -0.254 4.254 24 H 0.069 0.931 25 C 0.007 3.993 26 N -0.900 5.900 27 Si 0.900 3.100 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.391 0.609 39 H 0.162 0.838 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.154 0.846 45 H 0.093 0.907 46 H 0.018 0.982 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.266 -5.063 8.984 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.102 0.898 8 N -0.363 5.363 9 C 0.343 3.657 10 O -0.402 6.402 11 C -0.189 4.189 12 C -0.011 4.011 13 N -0.186 5.186 14 C 0.018 3.982 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.141 4.141 18 C -0.103 4.103 19 C -0.114 4.114 20 C -0.017 4.017 21 C 0.042 3.958 22 N -0.306 5.306 23 C -0.383 4.383 24 H 0.087 0.913 25 C -0.192 4.192 26 N -0.544 5.544 27 Si 0.730 3.270 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.226 0.774 39 H 0.179 0.821 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.152 0.848 44 H 0.172 0.828 45 H 0.111 0.889 46 H 0.036 0.964 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.392 -5.043 8.802 19.277 hybrid contribution -0.626 -0.677 -0.947 1.322 sum 15.766 -5.720 7.854 18.519 Atomic orbital electron populations 1.21801 0.95996 1.01369 1.00224 1.20498 0.93092 0.93572 0.87045 0.95714 1.22043 0.94223 1.01347 0.98943 1.21689 0.97507 0.99682 0.96629 1.22057 0.77220 1.01101 0.98469 0.89805 1.46005 1.08904 1.26473 1.54920 1.17884 0.86456 0.82053 0.79282 1.90830 1.62552 1.42214 1.44580 1.21122 0.95272 0.98613 1.03843 1.23066 0.88764 0.96095 0.93141 1.67945 1.11126 1.21888 1.17595 1.19012 0.94368 0.90575 0.94291 1.20819 0.91957 0.99014 0.99911 1.20970 1.00467 0.93789 0.96227 1.20936 0.93944 0.99352 0.99909 1.21105 0.94995 0.96734 0.97453 1.18854 0.93747 0.97544 1.01245 1.22009 0.93003 0.95397 0.91341 1.21069 0.83658 0.96877 0.94238 1.44005 1.02580 1.64827 1.19195 1.19083 0.95058 1.38269 0.85939 0.91292 1.25091 0.97805 0.99248 0.97065 1.69994 1.24061 1.43511 1.16794 0.86405 0.79453 0.80431 0.80680 1.20935 1.21699 1.20920 0.92820 0.94356 0.91975 0.92624 0.92049 0.92982 0.92173 0.77432 0.82076 0.84564 0.85190 0.85328 0.84819 0.82824 0.88885 0.96410 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.95 37.16 0.30 -2.25 16 2 C 0.16 3.33 3.50 -67.60 -0.24 3.09 16 3 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 4 C -0.13 -2.10 5.37 -26.61 -0.14 -2.24 16 5 C -0.12 -1.83 5.35 -26.69 -0.14 -1.98 16 6 C 0.12 2.21 2.60 -67.81 -0.18 2.04 16 7 H 0.08 1.82 7.58 -51.93 -0.39 1.42 16 8 N -0.71 -11.36 5.03 -54.66 -0.28 -11.64 16 9 C 0.56 9.76 7.74 -12.37 -0.10 9.66 16 10 O -0.53 -11.45 16.05 5.31 0.09 -11.37 16 11 C -0.18 -2.63 5.89 -104.83 -0.62 -3.25 16 12 C 0.16 2.05 10.68 -17.10 -0.18 1.86 16 13 N -0.48 -6.30 10.30 -10.67 -0.11 -6.41 16 14 C 0.14 1.73 6.61 -84.79 -0.56 1.17 16 15 C -0.10 -0.97 9.97 -39.48 -0.39 -1.37 16 16 C -0.09 -0.74 9.94 -39.93 -0.40 -1.14 16 17 C -0.12 -0.97 9.96 -39.92 -0.40 -1.37 16 18 C -0.08 -0.80 9.77 -39.46 -0.39 -1.19 16 19 C -0.11 -1.36 5.74 -106.81 -0.61 -1.98 16 20 C 0.01 0.12 9.46 -38.43 -0.36 -0.24 16 21 C 0.17 4.03 4.86 -3.71 -0.02 4.01 16 22 N -0.58 -14.39 2.99 -164.77 -0.49 -14.88 16 23 C -0.25 -6.92 8.57 -15.06 -0.13 -7.05 16 24 H 0.07 1.83 6.24 -52.49 -0.33 1.50 16 25 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 26 N -0.90 -26.63 11.23 55.49 0.62 -26.01 16 27 Si 0.90 22.38 29.58 -169.99 -5.03 17.35 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 31 H 0.05 1.02 7.44 -51.93 -0.39 0.63 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.26 7.63 -51.93 -0.40 0.86 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.39 4.81 6.63 -40.82 -0.27 4.54 16 39 H 0.16 1.55 6.37 -52.48 -0.33 1.22 16 40 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.15 2.00 7.70 -52.48 -0.40 1.60 16 45 H 0.09 2.64 6.15 -51.93 -0.32 2.32 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -33.68 378.67 -10.75 -44.43 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.62 Total: 4.90 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -4.64 Total: -2.08 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.25 Total: -58.94 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.68 -10.75 -44.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071849981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.255 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds