Wall clock time and date at job start Sat Apr 11 2020 05:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.58740 * 2 1 4 4 C 1.53185 * 109.58832 * 120.43111 * 2 1 3 5 5 C 1.53046 * 109.31641 * 174.42050 * 4 2 1 6 6 C 1.53035 * 109.53710 * 298.63699 * 5 4 2 7 7 H 1.09000 * 109.50027 * 301.41401 * 6 5 4 8 8 N 1.46495 * 109.49701 * 181.31087 * 6 5 4 9 9 C 1.34787 * 119.99872 * 155.15808 * 8 6 5 10 10 O 1.21563 * 119.99737 * 0.02562 * 9 8 6 11 11 C 1.47750 * 119.99760 * 180.02562 * 9 8 6 12 12 C 1.40597 * 120.27409 * 359.72591 * 11 9 8 13 13 N 1.30793 * 121.54088 * 179.75941 * 12 11 9 14 14 C 1.33822 * 121.71848 * 0.49907 * 13 12 11 15 15 C 1.40524 * 120.81407 * 179.72568 * 14 13 12 16 16 C 1.36129 * 119.81753 * 180.02562 * 15 14 13 17 17 C 1.39343 * 121.08570 * 359.97438 * 16 15 14 18 18 C 1.36144 * 120.83535 * 0.02562 * 17 16 15 19 19 C 1.40547 * 119.61977 * 0.02562 * 18 17 16 20 20 C 1.39016 * 120.26664 * 180.02562 * 11 9 8 21 21 C 1.53196 * 109.31200 * 61.36048 * 6 5 4 22 22 N 1.46918 * 108.77857 * 305.36370 * 21 6 5 23 23 C 1.36932 * 120.63514 * 233.58850 * 22 21 6 24 24 H 1.08002 * 120.00789 * 150.17887 * 23 22 21 25 25 C 1.38822 * 119.99700 * 330.17441 * 23 22 21 26 26 N 1.31620 * 119.99894 * 344.49622 * 25 23 22 27 27 Si 1.86801 * 119.99668 * 164.49562 * 25 23 22 28 28 H 1.48502 * 109.47029 * 60.00488 * 27 25 23 29 29 H 1.48504 * 109.46699 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47482 * 300.00186 * 27 25 23 31 31 H 1.08994 * 109.47201 * 180.27787 * 1 2 3 32 32 H 1.09006 * 109.47041 * 300.28207 * 1 2 3 33 33 H 1.09001 * 109.47232 * 60.27757 * 1 2 3 34 34 H 1.09004 * 109.49897 * 294.37430 * 4 2 1 35 35 H 1.08999 * 109.49834 * 54.47039 * 4 2 1 36 36 H 1.08999 * 109.45984 * 178.61509 * 5 4 2 37 37 H 1.09004 * 109.44459 * 58.64483 * 5 4 2 38 38 H 0.96995 * 120.00557 * 335.16288 * 8 6 5 39 39 H 1.08008 * 119.22795 * 359.97438 * 12 11 9 40 40 H 1.08005 * 120.09140 * 0.03282 * 15 14 13 41 41 H 1.08000 * 119.45565 * 180.02562 * 16 15 14 42 42 H 1.07993 * 119.57824 * 180.02562 * 17 16 15 43 43 H 1.07993 * 120.19120 * 180.02562 * 18 17 16 44 44 H 1.08003 * 121.01642 * 359.97438 * 20 11 9 45 45 H 1.09002 * 109.58341 * 185.57624 * 21 6 5 46 46 H 1.08999 * 109.58437 * 65.15322 * 21 6 5 47 47 H 0.96997 * 119.99522 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 6 3.9569 -1.6656 -0.0657 7 1 3.4983 -2.6528 -0.0088 8 7 5.4142 -1.8051 -0.1200 9 6 5.9677 -2.8454 -0.7743 10 8 5.2576 -3.6676 -1.3197 11 6 7.4375 -2.9864 -0.8285 12 6 8.2642 -2.0356 -0.2046 13 7 9.5678 -2.1386 -0.2331 14 6 10.1802 -3.1470 -0.8649 15 6 11.5824 -3.2359 -0.8884 16 6 12.1842 -4.2701 -1.5376 17 6 11.4322 -5.2494 -2.1834 18 6 10.0717 -5.1979 -2.1829 19 6 9.4167 -4.1437 -1.5234 20 6 8.0143 -4.0568 -1.5023 21 6 3.4650 -0.9452 -1.3250 22 7 2.0225 -0.6980 -1.1954 23 6 1.1537 -1.1098 -2.1704 24 1 0.1396 -1.3771 -1.9124 25 6 1.5763 -1.1836 -3.4907 26 7 2.6871 -0.5823 -3.8606 27 14 0.5684 -2.1364 -4.7420 28 1 -0.7920 -1.5479 -4.8332 29 1 1.2300 -2.0630 -6.0695 30 1 0.4664 -3.5559 -4.3181 31 1 -0.3633 -1.0276 0.0050 32 1 -0.3633 0.5182 0.8875 33 1 -0.3634 0.5095 -0.8925 34 1 1.7660 -0.1696 2.1366 35 1 1.6030 -1.7270 1.2890 36 1 3.9378 -1.3476 2.0650 37 1 4.0060 0.1460 1.0993 38 1 5.9808 -1.1489 0.3150 39 1 7.8122 -1.2026 0.3134 40 1 12.1810 -2.4859 -0.3927 41 1 13.2623 -4.3329 -1.5517 42 1 11.9349 -6.0594 -2.6907 43 1 9.4991 -5.9627 -2.6863 44 1 7.4033 -4.7993 -1.9941 45 1 3.6518 -1.5688 -2.1992 46 1 3.9902 0.0039 -1.4317 47 1 2.9826 -0.6342 -4.7831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071849981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:32 Heat of formation + Delta-G solvation = 17.251360 kcal Electronic energy + Delta-G solvation = -28925.384384 eV Core-core repulsion = 25072.364687 eV Total energy + Delta-G solvation = -3853.019696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.05494 -40.80263 -39.26266 -37.92300 -36.10628 -34.67081 -34.53276 -32.73648 -31.79963 -31.25989 -31.02886 -27.81848 -26.93388 -25.45632 -25.12741 -23.99128 -23.13393 -22.48470 -21.78232 -21.00228 -19.32498 -18.88874 -18.39814 -18.15894 -17.21343 -16.94788 -16.53604 -16.15215 -15.77057 -15.58821 -15.48691 -15.25166 -15.23024 -14.97333 -14.88041 -14.48682 -14.45537 -14.15019 -14.08699 -13.49599 -13.07208 -12.82118 -12.76356 -12.75078 -12.69921 -12.56819 -12.44768 -12.29451 -12.14073 -11.99286 -11.69132 -11.62914 -11.48590 -11.19515 -11.12998 -10.57786 -10.53414 -10.18816 -9.85408 -9.32815 -8.61361 -7.85412 -5.31632 -0.85797 -0.45443 0.80824 1.40233 1.45654 1.49640 1.49874 2.02789 2.23023 2.50437 3.03001 3.11611 3.30836 3.50293 3.53221 3.64879 3.73382 3.77414 3.91153 3.99912 4.10385 4.19364 4.25935 4.31206 4.39313 4.40670 4.60956 4.66872 4.72058 4.77582 4.83652 4.89479 4.92759 5.01741 5.03045 5.08265 5.19273 5.29724 5.31764 5.33136 5.38910 5.42830 5.44804 5.55662 5.61657 5.70676 5.79277 5.82396 6.40376 6.51388 6.70165 7.14339 7.19966 7.90301 8.39763 9.19551 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.002861 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.150978 B = 9785.008206 C =11153.962610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.152 3.848 3 H 0.022 0.978 4 C -0.117 4.117 5 C -0.109 4.109 6 C 0.132 3.868 7 H 0.054 0.946 8 N -0.700 5.700 9 C 0.558 3.442 10 O -0.580 6.580 11 C -0.203 4.203 12 C 0.163 3.837 13 N -0.488 5.488 14 C 0.118 3.882 15 C -0.115 4.115 16 C -0.077 4.077 17 C -0.112 4.112 18 C -0.098 4.098 19 C -0.127 4.127 20 C 0.004 3.996 21 C 0.180 3.820 22 N -0.603 5.603 23 C -0.251 4.251 24 H 0.074 0.926 25 C -0.053 4.053 26 N -0.933 5.933 27 Si 0.956 3.044 28 H -0.268 1.268 29 H -0.297 1.297 30 H -0.285 1.285 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.412 0.588 39 H 0.187 0.813 40 H 0.150 0.850 41 H 0.168 0.832 42 H 0.164 0.836 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.040 0.960 46 H -0.001 1.001 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.263 -5.306 11.095 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.040 0.960 4 C -0.157 4.157 5 C -0.147 4.147 6 C 0.025 3.975 7 H 0.072 0.928 8 N -0.351 5.351 9 C 0.345 3.655 10 O -0.460 6.460 11 C -0.208 4.208 12 C -0.011 4.011 13 N -0.196 5.196 14 C -0.002 4.002 15 C -0.134 4.134 16 C -0.097 4.097 17 C -0.130 4.130 18 C -0.117 4.117 19 C -0.129 4.129 20 C -0.023 4.023 21 C 0.053 3.947 22 N -0.327 5.327 23 C -0.381 4.381 24 H 0.092 0.908 25 C -0.249 4.249 26 N -0.580 5.580 27 Si 0.785 3.215 28 H -0.193 1.193 29 H -0.224 1.224 30 H -0.212 1.212 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.250 0.750 39 H 0.204 0.796 40 H 0.167 0.833 41 H 0.186 0.814 42 H 0.182 0.818 43 H 0.166 0.834 44 H 0.165 0.835 45 H 0.059 0.941 46 H 0.017 0.983 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 18.400 -5.254 10.970 22.056 hybrid contribution -1.090 -0.656 -1.608 2.051 sum 17.309 -5.910 9.362 20.547 Atomic orbital electron populations 1.21735 0.94802 1.01131 1.01025 1.20824 0.94285 0.93431 0.86726 0.95981 1.21949 0.94529 1.00892 0.98314 1.21671 0.97159 1.00092 0.95731 1.21584 0.78583 0.99389 0.97894 0.92763 1.45789 1.08027 1.26691 1.54574 1.18389 0.87695 0.81388 0.78024 1.90792 1.64109 1.44232 1.46888 1.20881 0.93229 1.00362 1.06315 1.23312 0.88612 0.96192 0.92994 1.67996 1.11044 1.22417 1.18097 1.19477 0.95753 0.90546 0.94441 1.21091 0.90826 1.00453 1.01009 1.21464 1.02413 0.92127 0.93680 1.21409 0.93192 0.99831 0.98558 1.21384 0.96215 0.96473 0.97594 1.19026 0.92957 0.98742 1.02172 1.22121 0.94081 0.95059 0.91013 1.20751 0.83856 0.95269 0.94832 1.44304 1.02482 1.65740 1.20149 1.19429 0.95526 1.36611 0.86563 0.90828 1.25814 0.99126 1.00884 0.99031 1.70159 1.25856 1.45599 1.16339 0.85501 0.78746 0.78981 0.78272 1.19339 1.22362 1.21200 0.93550 0.90262 0.94412 0.88495 0.92896 0.89415 0.90597 0.74991 0.79650 0.83267 0.81409 0.81835 0.83397 0.83500 0.94128 0.98291 0.94714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 7.95 71.98 0.57 -4.08 16 2 C 0.15 6.04 3.50 44.97 0.16 6.19 16 3 H 0.02 0.90 8.14 -2.38 -0.02 0.89 16 4 C -0.12 -3.60 5.37 30.67 0.16 -3.44 16 5 C -0.11 -3.14 5.35 30.62 0.16 -2.98 16 6 C 0.13 5.09 2.60 45.07 0.12 5.21 16 7 H 0.05 2.45 7.58 -2.39 -0.02 2.43 16 8 N -0.70 -22.79 5.03 -445.12 -2.24 -25.04 16 9 C 0.56 20.66 7.74 86.76 0.67 21.34 16 10 O -0.58 -27.33 16.05 -3.91 -0.06 -27.39 16 11 C -0.20 -6.10 5.89 -20.00 -0.12 -6.22 16 12 C 0.16 4.09 10.68 85.42 0.91 5.01 16 13 N -0.49 -12.65 10.30 -187.68 -1.93 -14.58 16 14 C 0.12 2.88 6.61 40.27 0.27 3.14 16 15 C -0.12 -2.02 9.97 22.34 0.22 -1.80 16 16 C -0.08 -0.92 9.94 22.04 0.22 -0.70 16 17 C -0.11 -1.37 9.96 22.05 0.22 -1.15 16 18 C -0.10 -1.73 9.77 22.35 0.22 -1.51 16 19 C -0.13 -3.09 5.74 -21.28 -0.12 -3.21 16 20 C 0.00 0.11 9.46 23.01 0.22 0.33 16 21 C 0.18 9.05 4.86 86.37 0.42 9.47 16 22 N -0.60 -30.60 2.99 -675.23 -2.02 -32.61 16 23 C -0.25 -14.13 8.57 84.04 0.72 -13.41 16 24 H 0.07 3.99 6.24 -2.91 -0.02 3.97 16 25 C -0.05 -3.15 4.94 84.86 0.42 -2.73 16 26 N -0.93 -58.41 11.23 21.65 0.24 -58.17 16 27 Si 0.96 47.86 29.58 68.60 2.03 49.89 16 28 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 29 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 30 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 31 H 0.05 1.71 7.44 -2.39 -0.02 1.69 16 32 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.04 1.51 7.63 -2.39 -0.02 1.49 16 34 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.41 9.82 6.63 -92.71 -0.61 9.21 16 39 H 0.19 3.41 6.37 -2.91 -0.02 3.40 16 40 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 42 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 43 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 44 H 0.15 4.22 7.70 -2.91 -0.02 4.20 16 45 H 0.04 2.46 6.15 -2.39 -0.01 2.45 16 46 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -80.26 378.67 1.84 -78.42 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.38 Total: 20.03 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 5.44 Total: 9.46 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -5.95 Total: -130.40 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.06 Total: -27.39 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -80.26 1.84 -78.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071849981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.669 kcal (2) G-P(sol) polarization free energy of solvation -80.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds