Wall clock time and date at job start Sat Apr 11 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.70092 * 2 1 4 4 C 1.53194 * 109.58737 * 239.64080 * 2 1 3 5 5 C 1.53037 * 109.31205 * 185.57679 * 4 2 1 6 6 C 1.53349 * 109.60802 * 61.37779 * 5 4 2 7 7 H 1.08997 * 109.47331 * 58.54561 * 6 5 4 8 8 N 1.46503 * 109.68678 * 178.74587 * 6 5 4 9 9 C 1.34778 * 119.99885 * 204.75170 * 8 6 5 10 10 O 1.21568 * 119.99955 * 359.97438 * 9 8 6 11 11 C 1.47756 * 119.99778 * 179.97438 * 9 8 6 12 12 C 1.40600 * 120.26961 * 359.97438 * 11 9 8 13 13 N 1.30801 * 121.54009 * 179.97438 * 12 11 9 14 14 C 1.33817 * 121.71729 * 359.97438 * 13 12 11 15 15 C 1.40522 * 120.81724 * 180.02562 * 14 13 12 16 16 C 1.36140 * 119.81373 * 179.97438 * 15 14 13 17 17 C 1.39336 * 121.08803 * 0.04550 * 16 15 14 18 18 C 1.36143 * 120.83700 * 359.97432 * 17 16 15 19 19 C 1.40550 * 119.61523 * 0.02562 * 18 17 16 20 20 C 1.39002 * 120.26884 * 179.71946 * 11 9 8 21 21 C 1.53193 * 109.14573 * 298.70956 * 6 5 4 22 22 N 1.46920 * 108.89428 * 54.58008 * 21 6 5 23 23 C 1.36936 * 120.63523 * 126.34140 * 22 21 6 24 24 H 1.08003 * 120.00492 * 209.05146 * 23 22 21 25 25 C 1.38815 * 119.99867 * 29.04810 * 23 22 21 26 26 N 1.31620 * 120.00010 * 15.03971 * 25 23 22 27 27 Si 1.86798 * 120.00070 * 195.03905 * 25 23 22 28 28 H 1.48501 * 109.47164 * 90.00023 * 27 25 23 29 29 H 1.48499 * 109.46965 * 210.00292 * 27 25 23 30 30 H 1.48503 * 109.46892 * 329.99816 * 27 25 23 31 31 H 1.08997 * 109.46874 * 299.65028 * 1 2 3 32 32 H 1.09009 * 109.47020 * 59.64497 * 1 2 3 33 33 H 1.08999 * 109.47431 * 179.64614 * 1 2 3 34 34 H 1.09002 * 109.49760 * 305.53463 * 4 2 1 35 35 H 1.09008 * 109.49324 * 65.59412 * 4 2 1 36 36 H 1.09007 * 109.46011 * 181.38484 * 5 4 2 37 37 H 1.09001 * 109.46052 * 301.35770 * 5 4 2 38 38 H 0.96999 * 119.99678 * 24.74713 * 8 6 5 39 39 H 1.07999 * 119.23153 * 359.95698 * 12 11 9 40 40 H 1.07997 * 120.09866 * 359.95781 * 15 14 13 41 41 H 1.08000 * 119.45747 * 179.97438 * 16 15 14 42 42 H 1.08001 * 119.58542 * 179.97438 * 17 16 15 43 43 H 1.07992 * 120.19384 * 180.02562 * 18 17 16 44 44 H 1.08006 * 121.01894 * 0.02562 * 20 11 9 45 45 H 1.08995 * 109.58974 * 294.71727 * 21 6 5 46 46 H 1.09002 * 109.58422 * 174.43748 * 21 6 5 47 47 H 0.96996 * 120.00153 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8480 -1.1701 6 6 3.9595 -1.6674 0.0655 7 1 3.5008 -2.6544 0.0075 8 7 5.4167 -1.8073 0.1229 9 6 5.9685 -2.8477 0.7784 10 8 5.2569 -3.6698 1.3223 11 6 7.4381 -2.9891 0.8358 12 6 8.2663 -2.0419 0.2083 13 7 9.5700 -2.1426 0.2439 14 6 10.1807 -3.1499 0.8786 15 6 11.5829 -3.2393 0.9054 16 6 12.1829 -4.2726 1.5577 17 6 11.4292 -5.2508 2.2030 18 6 10.0687 -5.1992 2.1991 19 6 9.4156 -4.1464 1.5354 20 6 8.0133 -4.0567 1.5152 21 6 3.4650 -0.9469 1.3237 22 7 2.0226 -0.6995 1.1945 23 6 1.1537 -1.1126 2.1690 24 1 0.1361 -1.3677 1.9124 25 6 1.5809 -1.2035 3.4866 26 7 2.7036 -0.6243 3.8559 27 14 0.5623 -2.1478 4.7357 28 1 0.9974 -3.5675 4.7575 29 1 0.7525 -1.5510 6.0821 30 1 -0.8727 -2.0755 4.3604 31 1 -0.3633 0.5084 0.8931 32 1 -0.3633 0.5194 -0.8869 33 1 -0.3634 -1.0276 -0.0063 34 1 1.6029 -1.7254 -1.2913 35 1 1.7655 -0.1672 -2.1369 36 1 3.9378 -1.3449 -2.0668 37 1 4.0061 0.1473 -1.0991 38 1 5.9844 -1.1512 -0.3108 39 1 7.8156 -1.2120 -0.3157 40 1 12.1828 -2.4905 0.4097 41 1 13.2610 -4.3359 1.5742 42 1 11.9305 -6.0603 2.7128 43 1 9.4948 -5.9626 2.7030 44 1 7.4011 -4.7968 2.0092 45 1 3.9903 0.0021 1.4317 46 1 3.6521 -1.5696 2.1986 47 1 3.0020 -0.6875 4.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071849989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:38 Heat of formation + Delta-G solvation = 39.021237 kcal Electronic energy + Delta-G solvation = -28928.143963 eV Core-core repulsion = 25076.068280 eV Total energy + Delta-G solvation = -3852.075684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.08825 -39.44006 -37.72034 -36.98793 -34.51720 -33.57810 -32.83145 -31.46851 -30.32472 -30.14317 -29.74448 -26.23114 -25.18979 -24.33408 -24.17339 -22.30071 -22.27249 -21.13652 -20.30267 -19.36099 -18.29475 -17.85954 -17.26080 -16.38514 -15.96202 -15.52445 -15.06114 -14.80334 -14.77390 -14.39301 -14.07736 -13.97995 -13.77901 -13.66645 -13.55539 -13.35877 -13.17832 -12.74285 -12.38398 -12.03990 -12.00273 -11.87668 -11.71046 -11.46213 -11.11885 -10.87845 -10.72074 -10.67868 -10.52728 -10.39870 -10.25370 -10.10838 -9.93495 -9.68561 -9.45957 -9.36051 -9.03587 -8.61112 -8.48042 -8.40425 -6.60568 -5.72514 -3.17237 0.06446 0.42458 1.68695 2.44998 3.31205 3.40205 3.44361 3.50075 3.50901 3.95968 3.98958 4.35056 4.51398 4.54441 4.61705 4.64070 4.83095 4.89029 5.01828 5.17878 5.33614 5.37356 5.47229 5.53730 5.57237 5.65388 5.66680 5.72613 5.82660 5.96735 6.05369 6.10275 6.13765 6.24965 6.27662 6.30865 6.39410 6.45377 6.48950 6.53714 6.62997 6.73406 6.89231 7.05100 7.13359 7.32112 7.63664 7.75760 7.82119 7.88769 8.49473 8.53770 9.25923 9.90183 10.45150 11.35391 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.002864 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.030696 B = 9774.606799 C =11149.657232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.116 3.884 7 H 0.084 0.916 8 N -0.712 5.712 9 C 0.558 3.442 10 O -0.525 6.525 11 C -0.183 4.183 12 C 0.163 3.837 13 N -0.478 5.478 14 C 0.139 3.861 15 C -0.098 4.098 16 C -0.095 4.095 17 C -0.123 4.123 18 C -0.084 4.084 19 C -0.112 4.112 20 C 0.009 3.991 21 C 0.167 3.833 22 N -0.583 5.583 23 C -0.252 4.252 24 H 0.071 0.929 25 C 0.006 3.994 26 N -0.901 5.901 27 Si 0.901 3.099 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.391 0.609 39 H 0.162 0.838 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.154 0.846 45 H 0.017 0.983 46 H 0.096 0.904 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.198 -4.985 -8.975 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.011 3.989 7 H 0.102 0.898 8 N -0.363 5.363 9 C 0.343 3.657 10 O -0.401 6.401 11 C -0.188 4.188 12 C -0.011 4.011 13 N -0.186 5.186 14 C 0.018 3.982 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.141 4.141 18 C -0.103 4.103 19 C -0.114 4.114 20 C -0.017 4.017 21 C 0.040 3.960 22 N -0.306 5.306 23 C -0.382 4.382 24 H 0.088 0.912 25 C -0.193 4.193 26 N -0.545 5.545 27 Si 0.731 3.269 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.226 0.774 39 H 0.179 0.821 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.152 0.848 44 H 0.172 0.828 45 H 0.035 0.965 46 H 0.114 0.886 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.315 -4.964 -8.795 19.188 hybrid contribution -0.619 -0.677 0.943 1.316 sum 15.696 -5.641 -7.852 18.435 Atomic orbital electron populations 1.21802 0.95985 1.01378 1.00233 1.20498 0.93077 0.93576 0.87051 0.95709 1.22044 0.94230 1.01350 0.98945 1.21738 0.97475 0.99655 0.96620 1.22102 0.77235 1.01070 0.98464 0.89822 1.45985 1.08889 1.26468 1.54926 1.17880 0.86462 0.82049 0.79278 1.90832 1.62451 1.42226 1.44640 1.21120 0.95269 0.98680 1.03767 1.23067 0.88749 0.96059 0.93194 1.67947 1.11174 1.21854 1.17582 1.19008 0.94366 0.90558 0.94314 1.20819 0.91968 0.99018 0.99895 1.20971 1.00464 0.93802 0.96217 1.20936 0.93935 0.99353 0.99923 1.21107 0.95009 0.96756 0.97413 1.18855 0.93746 0.97554 1.01235 1.22008 0.93016 0.95346 0.91378 1.21094 0.83574 0.96962 0.94383 1.44022 1.02622 1.64721 1.19279 1.19155 0.94718 1.38193 0.86110 0.91156 1.25079 0.97748 0.99459 0.97039 1.69994 1.23341 1.44288 1.16836 0.86319 0.79735 0.80041 0.80840 1.21349 1.21838 1.20445 0.91983 0.94342 0.92806 0.92056 0.92620 0.93008 0.92187 0.77441 0.82079 0.84565 0.85192 0.85328 0.84817 0.82822 0.96468 0.88616 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.94 37.16 0.30 -2.24 16 2 C 0.16 3.33 3.50 -67.60 -0.24 3.09 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.10 5.37 -26.61 -0.14 -2.24 16 5 C -0.12 -1.83 5.37 -26.53 -0.14 -1.98 16 6 C 0.12 2.21 2.62 -67.65 -0.18 2.04 16 7 H 0.08 1.81 7.58 -51.93 -0.39 1.42 16 8 N -0.71 -11.39 5.04 -54.50 -0.27 -11.67 16 9 C 0.56 9.79 7.74 -12.37 -0.10 9.69 16 10 O -0.52 -11.49 16.05 5.31 0.09 -11.40 16 11 C -0.18 -2.64 5.88 -104.83 -0.62 -3.26 16 12 C 0.16 2.05 10.68 -17.10 -0.18 1.87 16 13 N -0.48 -6.31 10.30 -10.68 -0.11 -6.42 16 14 C 0.14 1.74 6.61 -84.79 -0.56 1.18 16 15 C -0.10 -0.97 9.97 -39.48 -0.39 -1.37 16 16 C -0.09 -0.74 9.94 -39.93 -0.40 -1.14 16 17 C -0.12 -0.97 9.96 -39.93 -0.40 -1.37 16 18 C -0.08 -0.80 9.77 -39.46 -0.39 -1.19 16 19 C -0.11 -1.37 5.74 -106.81 -0.61 -1.98 16 20 C 0.01 0.12 9.46 -38.43 -0.36 -0.24 16 21 C 0.17 4.00 4.85 -3.71 -0.02 3.98 16 22 N -0.58 -14.39 2.99 -164.78 -0.49 -14.89 16 23 C -0.25 -6.87 8.60 -15.06 -0.13 -7.00 16 24 H 0.07 1.87 6.21 -52.48 -0.33 1.54 16 25 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 26 N -0.90 -26.66 11.14 55.49 0.62 -26.04 16 27 Si 0.90 22.38 29.58 -169.99 -5.03 17.35 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 31 H 0.06 1.25 7.62 -51.93 -0.40 0.86 16 32 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 33 H 0.05 1.02 7.45 -51.93 -0.39 0.63 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.39 4.82 6.64 -40.82 -0.27 4.55 16 39 H 0.16 1.56 6.37 -52.49 -0.33 1.22 16 40 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 44 H 0.15 2.01 7.70 -52.48 -0.40 1.61 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.10 2.72 6.06 -51.93 -0.31 2.41 16 47 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -33.72 378.56 -10.75 -44.47 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.61 Total: 4.98 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -4.64 Total: -2.09 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.26 Total: -59.01 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.72 -10.75 -44.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071849989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.490 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds