Wall clock time and date at job start Sat Apr 11 2020 05:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.44664 * 2 1 4 4 C 1.53041 * 109.45790 * 119.96060 * 2 1 3 5 5 C 1.53194 * 109.31184 * 181.38688 * 4 2 1 6 6 N 1.46919 * 108.77540 * 305.36803 * 5 4 2 7 7 C 1.36937 * 120.63118 * 233.62642 * 6 5 4 8 8 H 1.08001 * 119.99769 * 28.32088 * 7 6 5 9 9 C 1.38809 * 120.00289 * 208.31468 * 7 6 5 10 10 N 1.31622 * 120.00018 * 16.58544 * 9 7 6 11 11 Si 1.86804 * 120.00384 * 196.58658 * 9 7 6 12 12 H 1.48502 * 109.47128 * 59.99775 * 11 9 7 13 13 H 1.48495 * 109.47429 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46714 * 300.00605 * 11 9 7 15 15 C 1.46934 * 118.74144 * 53.61019 * 6 5 4 16 16 C 1.53034 * 109.46519 * 240.03342 * 2 1 3 17 17 H 1.09003 * 109.49794 * 298.59978 * 16 2 1 18 18 N 1.46504 * 109.49775 * 58.66017 * 16 2 1 19 19 C 1.34777 * 119.99912 * 205.00335 * 18 16 2 20 20 O 1.21586 * 120.00301 * 0.02562 * 19 18 16 21 21 C 1.47565 * 119.99939 * 179.97438 * 19 18 16 22 22 C 1.38711 * 120.43324 * 354.35338 * 21 19 18 23 23 C 1.39007 * 120.74885 * 180.02562 * 22 21 19 24 24 C 1.36348 * 121.19028 * 359.48297 * 23 22 21 25 25 C 1.40344 * 119.92838 * 0.76821 * 24 23 22 26 26 C 1.40690 * 122.10655 * 179.21209 * 25 24 23 27 27 C 1.36257 * 118.66807 * 180.02562 * 26 25 24 28 28 N 1.32504 * 121.84532 * 0.02562 * 27 26 25 29 29 C 1.31322 * 122.71582 * 359.97438 * 28 27 26 30 30 C 1.40132 * 119.92043 * 0.25492 * 29 28 27 31 31 H 1.09002 * 109.46983 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47311 * 299.97161 * 1 2 3 33 33 H 1.09002 * 109.46717 * 59.96983 * 1 2 3 34 34 H 1.08994 * 109.49907 * 301.34139 * 4 2 1 35 35 H 1.09000 * 109.49477 * 61.43593 * 4 2 1 36 36 H 1.09006 * 109.58264 * 65.15707 * 5 4 2 37 37 H 1.08999 * 109.58708 * 185.43475 * 5 4 2 38 38 H 0.97005 * 120.00063 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.58827 * 186.60546 * 15 6 5 40 40 H 1.08994 * 109.58658 * 66.17499 * 15 6 5 41 41 H 0.96998 * 120.00287 * 25.00350 * 18 16 2 42 42 H 1.07994 * 119.62090 * 0.03963 * 22 21 19 43 43 H 1.08002 * 119.40026 * 180.02562 * 23 22 21 44 44 H 1.07999 * 120.03090 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.66231 * 0.04427 * 26 25 24 46 46 H 1.08001 * 119.07494 * 180.02562 * 27 26 25 47 47 H 1.08007 * 120.03575 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7206 1.2502 5 6 3.5714 -0.6884 1.2644 6 7 4.0679 -1.2487 0.0002 7 6 4.9758 -2.2738 0.0003 8 1 5.0016 -2.9723 0.8236 9 6 5.8630 -2.4153 -1.0579 10 7 6.0648 -1.4124 -1.8861 11 14 6.7706 -4.0290 -1.3066 12 1 5.7878 -5.1228 -1.5137 13 1 7.6512 -3.9232 -2.4976 14 1 7.5937 -4.3239 -0.1062 15 6 3.5715 -0.6885 -1.2642 16 6 2.0400 -0.7207 -1.2500 17 1 1.6975 -1.7555 -1.2385 18 7 1.5257 -0.0487 -2.4459 19 6 1.3973 -0.7323 -3.6003 20 8 1.7078 -1.9068 -3.6492 21 6 0.8788 -0.0556 -4.8048 22 6 0.4117 1.2485 -4.7318 23 6 -0.0787 1.8920 -5.8622 24 6 -0.1059 1.2679 -7.0741 25 6 0.3520 -0.0536 -7.1916 26 6 0.3296 -0.7466 -8.4157 27 6 0.7911 -2.0282 -8.4498 28 7 1.2563 -2.6328 -7.3664 29 6 1.3064 -2.0463 -6.1925 30 6 0.8510 -0.7288 -6.0495 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3633 0.5143 -0.8897 34 1 1.6572 -0.2206 2.1398 35 1 1.6978 -1.7555 1.2384 36 1 3.9142 0.3411 1.3675 37 1 3.9416 -1.2822 2.1001 38 1 6.6851 -1.5111 -2.6254 39 1 3.9418 -1.2845 -2.0983 40 1 3.9143 0.3410 -1.3673 41 1 1.2776 0.8882 -2.4069 42 1 0.4295 1.7697 -3.7862 43 1 -0.4365 2.9078 -5.7806 44 1 -0.4906 1.7857 -7.9402 45 1 -0.0457 -0.2723 -9.3104 46 1 0.7773 -2.5663 -9.3862 47 1 1.6939 -2.5803 -5.3375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968492961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:05 Heat of formation + Delta-G solvation = 21.592648 kcal Electronic energy + Delta-G solvation = -29690.011722 eV Core-core repulsion = 25837.180278 eV Total energy + Delta-G solvation = -3852.831444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.12742 -40.80919 -39.19160 -38.17761 -36.15993 -34.80577 -33.93878 -32.84567 -32.18009 -31.30527 -29.96091 -28.95507 -26.07964 -25.65851 -24.69584 -24.45246 -23.33312 -22.62959 -21.70417 -20.88357 -19.03436 -18.79757 -18.72454 -17.77584 -17.31339 -16.96702 -16.76425 -16.19579 -15.99725 -15.65062 -15.45772 -15.30394 -15.11932 -14.87089 -14.68090 -14.56998 -14.34899 -14.07867 -13.71239 -13.52344 -13.30227 -13.08719 -13.07331 -12.98065 -12.72648 -12.60052 -12.53281 -12.36841 -12.19612 -11.91633 -11.63869 -11.42649 -11.21708 -11.18510 -10.83793 -10.56635 -10.38811 -10.18169 -10.15067 -9.10085 -8.69797 -7.91613 -5.37448 -0.91443 -0.12082 0.57808 1.37732 1.44705 1.48361 1.74000 2.05025 2.25868 2.46951 3.07732 3.25034 3.45534 3.52870 3.69481 3.74876 3.77359 3.83771 3.87034 3.95601 4.00085 4.14989 4.21888 4.39125 4.47465 4.54470 4.62944 4.67861 4.71578 4.73645 4.79524 4.88621 4.93039 4.98772 5.04078 5.12638 5.18624 5.20168 5.22477 5.28984 5.33716 5.44403 5.46272 5.52787 5.60142 5.68630 5.77039 5.80388 6.34150 6.54327 6.99816 7.10120 7.25389 7.83754 8.32168 9.12706 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010787 B = 0.003926 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.091413 B = 7129.826437 C = 9037.265699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 H 0.083 0.917 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.609 5.609 7 C -0.265 4.265 8 H 0.068 0.932 9 C -0.047 4.047 10 N -0.930 5.930 11 Si 0.957 3.043 12 H -0.286 1.286 13 H -0.295 1.295 14 H -0.265 1.265 15 C 0.179 3.821 16 C 0.140 3.860 17 H 0.050 0.950 18 N -0.693 5.693 19 C 0.548 3.452 20 O -0.576 6.576 21 C -0.132 4.132 22 C -0.057 4.057 23 C -0.104 4.104 24 C -0.072 4.072 25 C -0.051 4.051 26 C -0.140 4.140 27 C 0.048 3.952 28 N -0.519 5.519 29 C 0.106 3.894 30 C -0.095 4.095 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.023 0.977 37 H 0.054 0.946 38 H 0.246 0.754 39 H 0.041 0.959 40 H 0.001 0.999 41 H 0.412 0.588 42 H 0.161 0.839 43 H 0.182 0.818 44 H 0.179 0.821 45 H 0.185 0.815 46 H 0.178 0.822 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.335 13.646 -8.211 25.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.103 4.103 3 H 0.101 0.899 4 C -0.155 4.155 5 C 0.011 3.989 6 N -0.333 5.333 7 C -0.396 4.396 8 H 0.085 0.915 9 C -0.242 4.242 10 N -0.575 5.575 11 Si 0.786 3.214 12 H -0.213 1.213 13 H -0.222 1.222 14 H -0.190 1.190 15 C 0.052 3.948 16 C 0.034 3.966 17 H 0.068 0.932 18 N -0.345 5.345 19 C 0.337 3.663 20 O -0.457 6.457 21 C -0.137 4.137 22 C -0.076 4.076 23 C -0.123 4.123 24 C -0.090 4.090 25 C -0.056 4.056 26 C -0.159 4.159 27 C -0.096 4.096 28 N -0.228 5.228 29 C -0.063 4.063 30 C -0.098 4.098 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.067 0.933 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.251 0.749 42 H 0.179 0.821 43 H 0.199 0.801 44 H 0.196 0.804 45 H 0.203 0.797 46 H 0.195 0.805 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.722 11.967 -8.532 23.802 hybrid contribution 1.002 -0.357 -0.129 1.071 sum -17.720 11.610 -8.661 22.887 Atomic orbital electron populations 1.21783 0.92861 1.01636 1.03003 1.21276 0.96999 0.99480 0.92587 0.89867 1.21975 0.95629 1.00220 0.97722 1.21180 0.93634 0.96230 0.87889 1.44218 1.48164 1.39803 1.01087 1.19456 1.09401 1.03905 1.06803 0.91477 1.25742 0.98570 1.00056 0.99869 1.70147 1.38167 1.30799 1.18414 0.85487 0.78160 0.80390 0.77401 1.21293 1.22161 1.18969 1.20786 0.89744 0.95042 0.89257 1.21552 0.94808 0.95978 0.84268 0.93166 1.45722 1.64707 1.14745 1.09296 1.18660 0.77508 0.86152 0.84012 1.90613 1.52274 1.18462 1.84366 1.19831 1.05387 0.96742 0.91761 1.21886 0.92921 0.91217 1.01546 1.21424 0.97759 1.02136 0.90975 1.21672 0.95704 0.91356 1.00241 1.18576 0.98239 0.96217 0.92596 1.22358 0.99911 0.95311 0.98276 1.22845 0.95636 0.94112 0.96965 1.67544 1.15305 1.39891 1.00023 1.24198 0.93826 0.92670 0.95630 1.18977 1.00918 0.95592 0.94264 0.94090 0.90179 0.91591 0.88392 0.93306 0.95893 0.92715 0.94488 0.94013 0.98107 0.74934 0.82140 0.80116 0.80350 0.79743 0.80460 0.82016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.02 71.98 0.65 -2.24 16 2 C -0.08 -2.42 2.27 -10.77 -0.02 -2.45 16 3 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.12 -3.60 5.36 30.67 0.16 -3.43 16 5 C 0.14 5.49 6.51 86.36 0.56 6.05 16 6 N -0.61 -31.78 2.99 -699.10 -2.09 -33.87 16 7 C -0.27 -15.50 9.59 84.03 0.81 -14.69 16 8 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 9 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 10 N -0.93 -58.92 11.19 21.65 0.24 -58.68 16 11 Si 0.96 48.92 29.59 68.60 2.03 50.95 16 12 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 13 H -0.30 -15.20 7.11 99.48 0.71 -14.50 16 14 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 15 C 0.18 9.05 4.88 86.36 0.42 9.48 16 16 C 0.14 5.42 2.07 45.06 0.09 5.52 16 17 H 0.05 2.31 7.58 -2.39 -0.02 2.30 16 18 N -0.69 -22.01 4.32 -445.31 -1.92 -23.93 16 19 C 0.55 20.28 7.70 86.70 0.67 20.95 16 20 O -0.58 -27.49 13.13 -3.99 -0.05 -27.54 16 21 C -0.13 -3.84 5.90 -19.89 -0.12 -3.96 16 22 C -0.06 -1.00 9.51 22.57 0.21 -0.79 16 23 C -0.10 -1.20 9.93 22.01 0.22 -0.98 16 24 C -0.07 -0.94 9.79 22.34 0.22 -0.72 16 25 C -0.05 -1.14 5.74 -21.30 -0.12 -1.26 16 26 C -0.14 -2.66 9.88 22.41 0.22 -2.43 16 27 C 0.05 1.20 11.07 84.13 0.93 2.13 16 28 N -0.52 -18.32 10.30 -195.73 -2.02 -20.34 16 29 C 0.11 4.05 10.49 85.23 0.89 4.94 16 30 C -0.09 -2.98 5.76 -21.14 -0.12 -3.10 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.18 7.36 -2.39 -0.02 1.17 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.05 2.19 7.94 -2.39 -0.02 2.17 16 38 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 39 H 0.04 2.57 6.06 -2.39 -0.01 2.55 16 40 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.41 9.20 6.38 -92.71 -0.59 8.61 16 42 H 0.16 1.77 6.42 -2.91 -0.02 1.76 16 43 H 0.18 0.48 8.06 -2.91 -0.02 0.45 16 44 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 45 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 46 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 47 H 0.16 7.38 4.97 -2.93 -0.01 7.36 16 Total: -1.00 -86.39 375.35 2.69 -83.71 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.40 Total: 19.06 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 6.09 Total: 10.64 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -5.79 Total: -136.82 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.05 Total: -27.54 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.03 Total: 50.95 kcal Total: -86.39 2.69 -83.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968492961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.301 kcal (2) G-P(sol) polarization free energy of solvation -86.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds