Wall clock time and date at job start Sat Apr 11 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.45057 * 2 1 4 4 C 1.53050 * 109.45625 * 240.03839 * 2 1 3 5 5 C 1.53190 * 109.30973 * 178.61353 * 4 2 1 6 6 N 1.46934 * 108.77521 * 54.63809 * 5 4 2 7 7 C 1.36933 * 120.63018 * 126.38496 * 6 5 4 8 8 H 1.08000 * 119.99738 * 207.67420 * 7 6 5 9 9 C 1.38816 * 119.99995 * 27.68389 * 7 6 5 10 10 N 1.31618 * 119.99919 * 17.35667 * 9 7 6 11 11 Si 1.86802 * 119.99713 * 197.35378 * 9 7 6 12 12 H 1.48506 * 109.46738 * 90.00175 * 11 9 7 13 13 H 1.48495 * 109.46974 * 209.99696 * 11 9 7 14 14 H 1.48492 * 109.47457 * 330.00219 * 11 9 7 15 15 C 1.46928 * 118.76017 * 306.40572 * 6 5 4 16 16 C 1.53031 * 109.46100 * 119.97107 * 2 1 3 17 17 H 1.09002 * 109.49785 * 61.39901 * 16 2 1 18 18 N 1.46501 * 109.50005 * 301.33471 * 16 2 1 19 19 C 1.34768 * 120.00439 * 155.06825 * 18 16 2 20 20 O 1.21549 * 119.99927 * 359.97438 * 19 18 16 21 21 C 1.47885 * 120.00363 * 180.02562 * 19 18 16 22 22 C 1.40600 * 119.72740 * 359.97005 * 21 19 18 23 23 C 1.35850 * 120.95470 * 180.02562 * 22 21 19 24 24 C 1.40501 * 119.87450 * 0.02562 * 23 22 21 25 25 C 1.40488 * 121.83109 * 179.97438 * 24 23 22 26 26 N 1.31219 * 119.93512 * 180.02562 * 25 24 23 27 27 C 1.32558 * 122.80231 * 0.02562 * 26 25 24 28 28 C 1.36222 * 121.85073 * 359.97438 * 27 26 25 29 29 C 1.40760 * 118.67158 * 0.04341 * 28 27 26 30 30 C 1.38532 * 119.73473 * 180.02562 * 21 19 18 31 31 H 1.09004 * 109.46757 * 300.03538 * 1 2 3 32 32 H 1.09000 * 109.47236 * 60.02709 * 1 2 3 33 33 H 1.09000 * 109.47328 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.49685 * 298.56448 * 4 2 1 35 35 H 1.08997 * 109.49599 * 58.66462 * 4 2 1 36 36 H 1.09004 * 109.58186 * 174.41847 * 5 4 2 37 37 H 1.08994 * 109.58961 * 294.70720 * 5 4 2 38 38 H 0.97005 * 119.99457 * 180.02562 * 10 9 7 39 39 H 1.08996 * 109.56446 * 293.78714 * 15 6 5 40 40 H 1.09005 * 109.61635 * 173.35755 * 15 6 5 41 41 H 0.97005 * 119.99689 * 335.06388 * 18 16 2 42 42 H 1.08006 * 119.52304 * 0.02562 * 22 21 19 43 43 H 1.07990 * 120.06451 * 180.02562 * 23 22 21 44 44 H 1.07999 * 120.03374 * 0.03809 * 25 24 23 45 45 H 1.07998 * 119.07142 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.66507 * 180.02562 * 28 27 26 47 47 H 1.08008 * 120.35892 * 359.69469 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7207 -1.2502 5 6 3.5713 -0.6885 -1.2644 6 7 4.0679 -1.2490 -0.0002 7 6 4.9760 -2.2739 -0.0004 8 1 5.0089 -2.9662 0.8279 9 6 5.8542 -2.4229 -1.0650 10 7 6.0602 -1.4210 -1.8933 11 14 6.7437 -4.0453 -1.3219 12 1 5.9263 -4.9249 -2.1958 13 1 8.0583 -3.7927 -1.9646 14 1 6.9533 -4.7081 -0.0098 15 6 3.5715 -0.6894 1.2644 16 6 2.0399 -0.7208 1.2499 17 1 1.6973 -1.7555 1.2384 18 7 1.5257 -0.0489 2.4459 19 6 1.3985 -0.7320 3.6006 20 8 1.7100 -1.9059 3.6497 21 6 0.8789 -0.0539 4.8077 22 6 0.5199 1.3040 4.7444 23 6 0.0404 1.9517 5.8381 24 6 -0.1011 1.2619 7.0539 25 6 -0.5920 1.8912 8.2101 26 7 -0.7085 1.2113 9.3263 27 6 -0.3796 -0.0691 9.4250 28 6 0.1057 -0.7705 8.3628 29 6 0.2596 -0.1088 7.1300 30 6 0.7510 -0.7613 5.9919 31 1 -0.3633 0.5144 0.8897 32 1 -0.3634 0.5134 -0.8902 33 1 -0.3634 -1.0276 0.0005 34 1 1.6978 -1.7556 -1.2385 35 1 1.6572 -0.2206 -2.1399 36 1 3.9415 -1.2845 -2.0987 37 1 3.9142 0.3407 -1.3700 38 1 6.6737 -1.5253 -2.6375 39 1 3.9149 0.3398 1.3679 40 1 3.9412 -1.2858 2.0986 41 1 1.2768 0.8879 2.4067 42 1 0.6268 1.8400 3.8128 43 1 -0.2314 2.9949 5.7732 44 1 -0.8733 2.9334 8.1802 45 1 -0.5004 -0.5703 10.3739 46 1 0.3673 -1.8134 8.4647 47 1 1.0239 -1.8054 6.0362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968513988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:32 Heat of formation + Delta-G solvation = 35.437207 kcal Electronic energy + Delta-G solvation = -28735.711158 eV Core-core repulsion = 24883.480059 eV Total energy + Delta-G solvation = -3852.231099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.20592 -39.86261 -37.97365 -37.01387 -34.58818 -33.41767 -33.07051 -31.66108 -31.08661 -29.95451 -28.96987 -27.37471 -25.20843 -24.11650 -24.03274 -22.75762 -22.17667 -21.10354 -20.65764 -19.59786 -18.30896 -17.92879 -17.00795 -16.71933 -16.35042 -15.62692 -15.26827 -15.03152 -14.73514 -14.42712 -14.28211 -14.01188 -13.93769 -13.77379 -13.50445 -13.42386 -13.27622 -13.10541 -12.69047 -12.48379 -12.28198 -12.04033 -11.67636 -11.53163 -11.43627 -11.05954 -10.82222 -10.69156 -10.59243 -10.29053 -10.17059 -10.08268 -9.89442 -9.85629 -9.67568 -9.54511 -9.42411 -8.85803 -8.45578 -8.39947 -6.69078 -5.79070 -3.21175 -0.09495 0.36263 1.52128 2.32081 3.19062 3.27827 3.39969 3.46579 3.49119 3.78701 4.04165 4.16383 4.35019 4.40876 4.50119 4.58704 4.66534 4.82904 4.88593 5.07934 5.24213 5.25072 5.32990 5.35522 5.37925 5.44491 5.56534 5.59619 5.68169 5.85125 5.91075 5.92635 5.98809 6.02502 6.14027 6.19008 6.24871 6.25994 6.37430 6.52170 6.59862 6.63136 6.70158 6.80452 6.96294 7.33728 7.59667 7.63409 7.64081 7.82831 8.30734 8.45433 9.21482 9.83593 10.38936 11.29621 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002461 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.408021 B =11374.042845 C =12372.200338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.250 4.250 8 H 0.067 0.933 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.903 3.097 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.278 1.278 15 C 0.142 3.858 16 C 0.132 3.868 17 H 0.088 0.912 18 N -0.712 5.712 19 C 0.550 3.450 20 O -0.529 6.529 21 C -0.106 4.106 22 C -0.093 4.093 23 C -0.092 4.092 24 C -0.100 4.100 25 C 0.142 3.858 26 N -0.485 5.485 27 C 0.071 3.929 28 C -0.143 4.143 29 C -0.034 4.034 30 C -0.045 4.045 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.019 0.981 38 H 0.253 0.747 39 H 0.017 0.983 40 H 0.058 0.942 41 H 0.394 0.606 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.142 0.858 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.966 8.833 14.994 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.309 5.309 7 C -0.380 4.380 8 H 0.085 0.915 9 C -0.196 4.196 10 N -0.548 5.548 11 Si 0.733 3.267 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.204 1.204 15 C 0.014 3.986 16 C 0.027 3.973 17 H 0.106 0.894 18 N -0.363 5.363 19 C 0.336 3.664 20 O -0.406 6.406 21 C -0.110 4.110 22 C -0.112 4.112 23 C -0.111 4.111 24 C -0.102 4.102 25 C -0.029 4.029 26 N -0.193 5.193 27 C -0.072 4.072 28 C -0.163 4.163 29 C -0.039 4.039 30 C -0.065 4.065 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.229 0.771 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.182 0.818 45 H 0.172 0.828 46 H 0.160 0.840 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.892 8.246 15.690 23.806 hybrid contribution 0.725 -0.701 -1.001 1.421 sum -15.166 7.545 14.689 22.422 Atomic orbital electron populations 1.21862 0.95979 1.01632 1.00716 1.21311 0.94562 0.99677 0.95469 0.91450 1.22250 1.00677 0.99577 0.94808 1.20852 0.87307 0.97360 0.90392 1.43994 1.48094 1.39780 0.99080 1.19234 1.09713 1.02809 1.06222 0.91527 1.25020 0.97211 0.97523 0.99866 1.70041 1.37869 1.28961 1.17963 0.86268 0.78706 0.83664 0.78059 1.21401 1.21784 1.20365 1.21189 0.89963 0.96694 0.90756 1.21831 0.96821 0.97001 0.81652 0.89395 1.46057 1.65519 1.14220 1.10457 1.18182 0.78575 0.86579 0.83064 1.90818 1.49570 1.15702 1.84476 1.20174 1.01750 0.94419 0.94689 1.21012 0.97540 0.93352 0.99255 1.20871 0.98890 1.00118 0.91268 1.19156 1.00891 0.94015 0.96111 1.23249 0.93208 0.99686 0.86782 1.67391 1.15251 1.08986 1.27692 1.22198 0.96120 0.90004 0.98899 1.22025 1.00140 1.01500 0.92600 1.18156 0.98155 0.93183 0.94379 1.21473 0.94315 1.00564 0.90100 0.93470 0.92891 0.92880 0.92383 0.92659 0.89201 0.96297 0.93660 0.96474 0.92331 0.77131 0.85052 0.84310 0.81797 0.82823 0.84039 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.02 37.16 0.34 -1.46 16 2 C -0.09 -1.40 2.27 -90.58 -0.21 -1.60 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -2.41 5.36 -26.61 -0.14 -2.56 16 5 C 0.17 3.86 5.31 -3.71 -0.02 3.84 16 6 N -0.59 -14.73 3.00 -172.31 -0.52 -15.24 16 7 C -0.25 -6.99 9.58 -15.06 -0.14 -7.14 16 8 H 0.07 1.88 7.89 -52.49 -0.41 1.47 16 9 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 10 N -0.90 -26.13 11.19 55.49 0.62 -25.51 16 11 Si 0.90 22.03 29.59 -169.99 -5.03 17.00 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.14 3.04 6.09 -3.71 -0.02 3.02 16 16 C 0.13 2.29 2.06 -67.81 -0.14 2.15 16 17 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 18 N -0.71 -9.79 4.32 -54.62 -0.24 -10.03 16 19 C 0.55 8.27 7.74 -12.32 -0.10 8.17 16 20 O -0.53 -10.17 15.97 5.32 0.08 -10.09 16 21 C -0.11 -1.25 5.87 -104.95 -0.62 -1.86 16 22 C -0.09 -0.82 9.44 -39.55 -0.37 -1.19 16 23 C -0.09 -0.69 9.77 -39.59 -0.39 -1.08 16 24 C -0.10 -0.91 5.75 -106.78 -0.61 -1.52 16 25 C 0.14 1.18 11.04 -16.97 -0.19 0.99 16 26 N -0.49 -4.76 10.29 -13.14 -0.14 -4.89 16 27 C 0.07 0.61 11.07 -17.96 -0.20 0.41 16 28 C -0.14 -1.25 9.88 -39.35 -0.39 -1.64 16 29 C -0.03 -0.34 5.74 -106.83 -0.61 -0.96 16 30 C -0.05 -0.52 9.38 -38.78 -0.36 -0.88 16 31 H 0.05 0.50 7.36 -51.93 -0.38 0.12 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 41 H 0.39 4.11 6.29 -40.82 -0.26 3.86 16 42 H 0.13 0.85 6.34 -52.48 -0.33 0.52 16 43 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 46 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.15 1.70 7.62 -52.48 -0.40 1.30 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -33.43 380.52 -10.43 -43.86 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.69 Total: 2.49 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -4.26 Total: -3.34 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.27 Total: -55.66 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.43 -10.43 -43.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968513988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.300 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds