Wall clock time and date at job start Sat Apr 11 2020 05:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.45057 * 2 1 4 4 C 1.53050 * 109.45625 * 240.03839 * 2 1 3 5 5 C 1.53190 * 109.30973 * 178.61353 * 4 2 1 6 6 N 1.46934 * 108.77521 * 54.63809 * 5 4 2 7 7 C 1.36933 * 120.63018 * 126.38496 * 6 5 4 8 8 H 1.08000 * 119.99738 * 207.67420 * 7 6 5 9 9 C 1.38816 * 119.99995 * 27.68389 * 7 6 5 10 10 N 1.31618 * 119.99919 * 17.35667 * 9 7 6 11 11 Si 1.86802 * 119.99713 * 197.35378 * 9 7 6 12 12 H 1.48506 * 109.46738 * 90.00175 * 11 9 7 13 13 H 1.48495 * 109.46974 * 209.99696 * 11 9 7 14 14 H 1.48492 * 109.47457 * 330.00219 * 11 9 7 15 15 C 1.46928 * 118.76017 * 306.40572 * 6 5 4 16 16 C 1.53031 * 109.46100 * 119.97107 * 2 1 3 17 17 H 1.09002 * 109.49785 * 61.39901 * 16 2 1 18 18 N 1.46501 * 109.50005 * 301.33471 * 16 2 1 19 19 C 1.34768 * 120.00439 * 155.06825 * 18 16 2 20 20 O 1.21549 * 119.99927 * 359.97438 * 19 18 16 21 21 C 1.47885 * 120.00363 * 180.02562 * 19 18 16 22 22 C 1.40600 * 119.72740 * 359.97005 * 21 19 18 23 23 C 1.35850 * 120.95470 * 180.02562 * 22 21 19 24 24 C 1.40501 * 119.87450 * 0.02562 * 23 22 21 25 25 C 1.40488 * 121.83109 * 179.97438 * 24 23 22 26 26 N 1.31219 * 119.93512 * 180.02562 * 25 24 23 27 27 C 1.32558 * 122.80231 * 0.02562 * 26 25 24 28 28 C 1.36222 * 121.85073 * 359.97438 * 27 26 25 29 29 C 1.40760 * 118.67158 * 0.04341 * 28 27 26 30 30 C 1.38532 * 119.73473 * 180.02562 * 21 19 18 31 31 H 1.09004 * 109.46757 * 300.03538 * 1 2 3 32 32 H 1.09000 * 109.47236 * 60.02709 * 1 2 3 33 33 H 1.09000 * 109.47328 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.49685 * 298.56448 * 4 2 1 35 35 H 1.08997 * 109.49599 * 58.66462 * 4 2 1 36 36 H 1.09004 * 109.58186 * 174.41847 * 5 4 2 37 37 H 1.08994 * 109.58961 * 294.70720 * 5 4 2 38 38 H 0.97005 * 119.99457 * 180.02562 * 10 9 7 39 39 H 1.08996 * 109.56446 * 293.78714 * 15 6 5 40 40 H 1.09005 * 109.61635 * 173.35755 * 15 6 5 41 41 H 0.97005 * 119.99689 * 335.06388 * 18 16 2 42 42 H 1.08006 * 119.52304 * 0.02562 * 22 21 19 43 43 H 1.07990 * 120.06451 * 180.02562 * 23 22 21 44 44 H 1.07999 * 120.03374 * 0.03809 * 25 24 23 45 45 H 1.07998 * 119.07142 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.66507 * 180.02562 * 28 27 26 47 47 H 1.08008 * 120.35892 * 359.69469 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7207 -1.2502 5 6 3.5713 -0.6885 -1.2644 6 7 4.0679 -1.2490 -0.0002 7 6 4.9760 -2.2739 -0.0004 8 1 5.0089 -2.9662 0.8279 9 6 5.8542 -2.4229 -1.0650 10 7 6.0602 -1.4210 -1.8933 11 14 6.7437 -4.0453 -1.3219 12 1 5.9263 -4.9249 -2.1958 13 1 8.0583 -3.7927 -1.9646 14 1 6.9533 -4.7081 -0.0098 15 6 3.5715 -0.6894 1.2644 16 6 2.0399 -0.7208 1.2499 17 1 1.6973 -1.7555 1.2384 18 7 1.5257 -0.0489 2.4459 19 6 1.3985 -0.7320 3.6006 20 8 1.7100 -1.9059 3.6497 21 6 0.8789 -0.0539 4.8077 22 6 0.5199 1.3040 4.7444 23 6 0.0404 1.9517 5.8381 24 6 -0.1011 1.2619 7.0539 25 6 -0.5920 1.8912 8.2101 26 7 -0.7085 1.2113 9.3263 27 6 -0.3796 -0.0691 9.4250 28 6 0.1057 -0.7705 8.3628 29 6 0.2596 -0.1088 7.1300 30 6 0.7510 -0.7613 5.9919 31 1 -0.3633 0.5144 0.8897 32 1 -0.3634 0.5134 -0.8902 33 1 -0.3634 -1.0276 0.0005 34 1 1.6978 -1.7556 -1.2385 35 1 1.6572 -0.2206 -2.1399 36 1 3.9415 -1.2845 -2.0987 37 1 3.9142 0.3407 -1.3700 38 1 6.6737 -1.5253 -2.6375 39 1 3.9149 0.3398 1.3679 40 1 3.9412 -1.2858 2.0986 41 1 1.2768 0.8879 2.4067 42 1 0.6268 1.8400 3.8128 43 1 -0.2314 2.9949 5.7732 44 1 -0.8733 2.9334 8.1802 45 1 -0.5004 -0.5703 10.3739 46 1 0.3673 -1.8134 8.4647 47 1 1.0239 -1.8054 6.0362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968513988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:31 Heat of formation + Delta-G solvation = 14.954821 kcal Electronic energy + Delta-G solvation = -28736.599341 eV Core-core repulsion = 24883.480059 eV Total energy + Delta-G solvation = -3853.119282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.97041 -41.03666 -39.34379 -37.92978 -36.25679 -34.63316 -33.98014 -33.05572 -32.50335 -30.63382 -30.45404 -28.96672 -26.35165 -25.66364 -24.79030 -23.90294 -23.16165 -22.70280 -21.85700 -21.09043 -19.31410 -18.77050 -18.63124 -17.74663 -17.21533 -17.03995 -16.61652 -16.21129 -15.91964 -15.65855 -15.35762 -15.33361 -15.11152 -14.95501 -14.70156 -14.60986 -14.52276 -14.17368 -13.80978 -13.60754 -13.42251 -13.21684 -13.14956 -13.04363 -12.77562 -12.65900 -12.31093 -12.10836 -12.03571 -11.97199 -11.68013 -11.48344 -11.27916 -11.26003 -11.04492 -10.61903 -10.52007 -10.29850 -10.05569 -9.11964 -8.71787 -7.92632 -5.37840 -0.83053 -0.34116 0.81120 1.42674 1.43944 1.47974 1.53360 2.01449 2.32816 2.48548 3.06063 3.21208 3.46377 3.50676 3.53438 3.70602 3.75738 3.75995 3.84407 3.99209 4.01558 4.08072 4.10949 4.29360 4.43237 4.49772 4.60677 4.65536 4.66487 4.75562 4.75758 4.91427 4.93198 4.94754 5.02821 5.04203 5.08131 5.16182 5.20257 5.23280 5.27657 5.42247 5.45732 5.53567 5.61343 5.62068 5.72039 5.76571 6.34602 6.50845 6.96026 7.10648 7.17467 7.80403 8.29916 9.12890 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002461 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.408021 B =11374.042845 C =12372.200338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 H 0.084 0.916 4 C -0.123 4.123 5 C 0.171 3.829 6 N -0.606 5.606 7 C -0.268 4.268 8 H 0.051 0.949 9 C -0.043 4.043 10 N -0.928 5.928 11 Si 0.964 3.036 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.144 3.856 16 C 0.150 3.850 17 H 0.056 0.944 18 N -0.695 5.695 19 C 0.549 3.451 20 O -0.582 6.582 21 C -0.116 4.116 22 C -0.099 4.099 23 C -0.071 4.071 24 C -0.110 4.110 25 C 0.148 3.852 26 N -0.508 5.508 27 C 0.067 3.933 28 C -0.155 4.155 29 C -0.049 4.049 30 C -0.062 4.062 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.007 0.993 38 H 0.253 0.747 39 H 0.023 0.977 40 H 0.028 0.972 41 H 0.415 0.585 42 H 0.159 0.841 43 H 0.183 0.817 44 H 0.201 0.799 45 H 0.175 0.825 46 H 0.153 0.847 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.231 11.583 15.697 26.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 H 0.103 0.897 4 C -0.163 4.163 5 C 0.046 3.954 6 N -0.330 5.330 7 C -0.398 4.398 8 H 0.069 0.931 9 C -0.239 4.239 10 N -0.573 5.573 11 Si 0.792 3.208 12 H -0.209 1.209 13 H -0.214 1.214 14 H -0.201 1.201 15 C 0.017 3.983 16 C 0.043 3.957 17 H 0.074 0.926 18 N -0.347 5.347 19 C 0.337 3.663 20 O -0.462 6.462 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.091 4.091 24 C -0.112 4.112 25 C -0.023 4.023 26 N -0.216 5.216 27 C -0.075 4.075 28 C -0.175 4.175 29 C -0.055 4.055 30 C -0.081 4.081 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.062 0.938 39 H 0.041 0.959 40 H 0.046 0.954 41 H 0.254 0.746 42 H 0.177 0.823 43 H 0.200 0.800 44 H 0.218 0.782 45 H 0.192 0.808 46 H 0.171 0.829 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.194 11.041 16.411 26.875 hybrid contribution 1.440 -1.515 -1.097 2.360 sum -16.755 9.526 15.314 24.617 Atomic orbital electron populations 1.21787 0.92815 1.01693 1.03020 1.21241 0.97005 0.99476 0.92410 0.89743 1.22086 0.96622 0.99807 0.97746 1.20731 0.90723 0.95517 0.88442 1.44211 1.48225 1.39719 1.00845 1.19379 1.10593 1.03683 1.06143 0.93073 1.25700 0.98106 1.00445 0.99651 1.70163 1.38457 1.30433 1.18250 0.85319 0.77579 0.80007 0.77869 1.20850 1.21413 1.20130 1.21223 0.92902 0.95839 0.88353 1.21296 0.93686 0.96394 0.84281 0.92554 1.45764 1.64797 1.15063 1.09089 1.18763 0.77478 0.86033 0.84053 1.90793 1.51869 1.18226 1.85335 1.19993 1.03177 0.95975 0.92924 1.21234 0.97670 0.91778 1.01088 1.21321 0.96352 1.01727 0.89670 1.19472 1.00826 0.93537 0.97387 1.23843 0.91681 1.01004 0.85816 1.67465 1.16086 1.09489 1.28568 1.22563 0.95316 0.89964 0.99636 1.22208 1.00591 1.02297 0.92388 1.18325 0.98564 0.94283 0.94278 1.21427 0.95461 1.00191 0.90997 0.91069 0.90703 0.93995 0.93691 0.89719 0.92710 0.97506 0.93820 0.95906 0.95371 0.74616 0.82335 0.79978 0.78246 0.80791 0.82938 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.02 71.98 0.65 -2.25 16 2 C -0.08 -2.36 2.27 -10.77 -0.02 -2.39 16 3 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.12 -4.36 5.36 30.67 0.16 -4.20 16 5 C 0.17 8.12 5.31 86.36 0.46 8.58 16 6 N -0.61 -31.66 3.00 -699.07 -2.09 -33.75 16 7 C -0.27 -15.66 9.58 84.04 0.81 -14.85 16 8 H 0.05 3.07 7.89 -2.91 -0.02 3.05 16 9 C -0.04 -2.48 4.91 84.86 0.42 -2.06 16 10 N -0.93 -55.13 11.19 21.65 0.24 -54.89 16 11 Si 0.96 46.54 29.59 68.60 2.03 48.57 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 14 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 15 C 0.14 6.39 6.09 86.36 0.53 6.92 16 16 C 0.15 5.21 2.06 45.07 0.09 5.30 16 17 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 18 N -0.70 -18.43 4.32 -445.01 -1.92 -20.35 16 19 C 0.55 16.76 7.74 86.80 0.67 17.43 16 20 O -0.58 -23.84 15.97 -3.87 -0.06 -23.90 16 21 C -0.12 -2.68 5.87 -20.08 -0.12 -2.79 16 22 C -0.10 -1.43 9.44 22.29 0.21 -1.22 16 23 C -0.07 -0.78 9.77 22.27 0.22 -0.56 16 24 C -0.11 -1.71 5.75 -21.26 -0.12 -1.83 16 25 C 0.15 1.97 11.04 85.33 0.94 2.91 16 26 N -0.51 -8.82 10.29 -195.50 -2.01 -10.83 16 27 C 0.07 1.07 11.07 84.11 0.93 2.00 16 28 C -0.16 -2.66 9.88 22.42 0.22 -2.44 16 29 C -0.05 -0.98 5.74 -21.29 -0.12 -1.11 16 30 C -0.06 -1.45 9.38 22.79 0.21 -1.24 16 31 H 0.07 1.20 7.36 -2.38 -0.02 1.18 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.05 2.97 6.04 -2.39 -0.01 2.96 16 37 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 39 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.03 1.38 7.93 -2.38 -0.02 1.36 16 41 H 0.41 7.40 6.29 -92.70 -0.58 6.82 16 42 H 0.16 1.32 6.34 -2.91 -0.02 1.30 16 43 H 0.18 0.41 8.06 -2.92 -0.02 0.39 16 44 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 45 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 46 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 47 H 0.13 3.36 7.62 -2.91 -0.02 3.34 16 Total: -1.00 -78.36 380.52 2.72 -75.64 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.40 Total: 13.30 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 6.13 Total: 6.22 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -5.79 Total: -119.83 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.06 Total: -23.90 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -78.36 2.72 -75.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968513988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.596 kcal (2) G-P(sol) polarization free energy of solvation -78.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds