Wall clock time and date at job start Sat Apr 11 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.44830 * 2 1 4 4 C 1.53104 * 109.50680 * 240.02060 * 2 1 3 5 5 C 1.53198 * 109.33164 * 178.62682 * 4 2 1 6 6 N 1.46931 * 108.77283 * 54.63607 * 5 4 2 7 7 C 1.36941 * 120.62771 * 126.41155 * 6 5 4 8 8 H 1.07989 * 120.00218 * 331.80540 * 7 6 5 9 9 C 1.38812 * 119.99588 * 151.80838 * 7 6 5 10 10 N 1.31619 * 119.99989 * 343.08363 * 9 7 6 11 11 Si 1.86796 * 120.00024 * 163.08549 * 9 7 6 12 12 H 1.48504 * 109.47297 * 59.99890 * 11 9 7 13 13 H 1.48494 * 109.47420 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47402 * 299.99871 * 11 9 7 15 15 C 1.46929 * 118.73822 * 306.39000 * 6 5 4 16 16 C 1.53039 * 109.46308 * 119.96672 * 2 1 3 17 17 H 1.09004 * 109.49919 * 301.37417 * 16 2 1 18 18 N 1.46500 * 109.49780 * 61.43543 * 16 2 1 19 19 C 1.34777 * 120.00138 * 204.93909 * 18 16 2 20 20 O 1.21551 * 120.00163 * 359.97438 * 19 18 16 21 21 C 1.47886 * 119.99987 * 179.97438 * 19 18 16 22 22 C 1.40594 * 119.73102 * 0.02562 * 21 19 18 23 23 C 1.35850 * 120.95285 * 179.97438 * 22 21 19 24 24 C 1.40488 * 119.87954 * 0.02562 * 23 22 21 25 25 C 1.40488 * 121.83899 * 180.02562 * 24 23 22 26 26 N 1.31210 * 119.93859 * 179.72628 * 25 24 23 27 27 C 1.32553 * 122.80673 * 0.25552 * 26 25 24 28 28 C 1.36222 * 121.84736 * 359.97438 * 27 26 25 29 29 C 1.40761 * 118.67287 * 0.02562 * 28 27 26 30 30 C 1.38546 * 119.72835 * 180.51892 * 21 19 18 31 31 H 1.08999 * 109.47367 * 300.03109 * 1 2 3 32 32 H 1.09004 * 109.47330 * 60.03589 * 1 2 3 33 33 H 1.09004 * 109.46606 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.48862 * 58.67236 * 4 2 1 35 35 H 1.08993 * 109.51759 * 298.59818 * 4 2 1 36 36 H 1.09000 * 109.58846 * 294.85088 * 5 4 2 37 37 H 1.09001 * 109.70272 * 174.49267 * 5 4 2 38 38 H 0.96999 * 119.99925 * 180.02562 * 10 9 7 39 39 H 1.08993 * 109.58330 * 293.82051 * 15 6 5 40 40 H 1.09001 * 109.58037 * 173.39384 * 15 6 5 41 41 H 0.96996 * 119.99893 * 24.93432 * 18 16 2 42 42 H 1.08005 * 119.52292 * 359.97438 * 22 21 19 43 43 H 1.08005 * 120.05764 * 180.02562 * 23 22 21 44 44 H 1.08004 * 120.02922 * 0.02562 * 25 24 23 45 45 H 1.07997 * 119.07810 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.66376 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.35879 * 359.49878 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0412 -0.7211 -1.2501 5 6 3.5728 -0.6889 -1.2634 6 7 4.0686 -1.2489 0.0012 7 6 4.9772 -2.2735 0.0018 8 1 5.0054 -2.9706 -0.8224 9 6 5.8618 -2.4159 1.0620 10 7 6.0658 -1.4119 1.8883 11 14 6.7629 -4.0323 1.3159 12 1 7.5873 -4.3330 0.1179 13 1 7.6425 -3.9269 2.5076 14 1 5.7757 -5.1221 1.5237 15 6 3.5714 -0.6884 1.2651 16 6 2.0399 -0.7207 1.2500 17 1 1.6567 -0.2211 2.1399 18 7 1.5802 -2.1117 1.2342 19 6 1.4529 -2.7926 2.3904 20 8 1.7199 -2.2527 3.4462 21 6 0.9883 -4.1965 2.3744 22 6 0.6816 -4.8155 1.1499 23 6 0.2534 -6.1040 1.1063 24 6 0.1118 -6.8352 2.2975 25 6 -0.3271 -8.1697 2.3003 26 7 -0.4408 -8.8193 3.4346 27 6 -0.1616 -8.2697 4.6081 28 6 0.2667 -6.9810 4.7145 29 6 0.4135 -6.2189 3.5402 30 6 0.8492 -4.8877 3.5670 31 1 -0.3634 0.5143 0.8897 32 1 -0.3634 0.5133 -0.8903 33 1 -0.3633 -1.0277 0.0005 34 1 1.6590 -0.2213 -2.1401 35 1 1.6993 -1.7560 -1.2389 36 1 3.9157 0.3407 -1.3665 37 1 3.9456 -1.2834 -2.0975 38 1 6.6843 -1.5113 2.6289 39 1 3.9142 0.3410 1.3682 40 1 3.9412 -1.2843 2.0995 41 1 1.3674 -2.5426 0.3917 42 1 0.7879 -4.2586 0.2306 43 1 0.0221 -6.5654 0.1575 44 1 -0.5662 -8.6620 1.3692 45 1 -0.2761 -8.8604 5.5049 46 1 0.4892 -6.5525 5.6806 47 1 1.0857 -4.4094 4.5059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968513990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:36 Heat of formation + Delta-G solvation = 37.455096 kcal Electronic energy + Delta-G solvation = -29886.094410 eV Core-core repulsion = 26033.950814 eV Total energy + Delta-G solvation = -3852.143597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.96887 -39.68794 -37.90038 -36.75740 -34.20512 -33.23888 -32.84386 -31.45214 -30.99909 -29.72078 -29.13405 -27.37099 -25.02820 -24.02345 -23.87500 -22.55300 -22.09093 -21.14252 -20.86580 -18.79125 -18.36419 -17.69251 -16.79868 -16.60177 -16.18282 -15.20280 -15.04183 -14.98354 -14.56835 -14.27510 -14.08224 -13.85642 -13.77547 -13.71346 -13.61796 -13.31251 -13.04030 -12.88927 -12.67017 -12.42637 -12.02994 -11.96581 -11.62203 -11.43403 -11.19673 -11.11954 -10.93279 -10.73294 -10.55243 -10.36606 -10.26753 -9.95953 -9.79026 -9.69909 -9.55807 -9.42667 -9.16443 -8.47547 -8.42584 -8.19714 -6.66619 -5.78535 -3.21871 0.14151 0.61130 1.75615 2.59307 3.37074 3.44055 3.44748 3.49789 3.64426 4.05627 4.23474 4.39269 4.48854 4.60465 4.63955 4.85006 4.91638 5.08635 5.10516 5.18088 5.20078 5.30815 5.39908 5.44712 5.52491 5.55990 5.61554 5.81739 5.83280 5.88659 5.91266 5.96750 6.10776 6.17914 6.22808 6.26231 6.32461 6.40520 6.46351 6.50495 6.60467 6.63331 6.71424 6.84381 6.94992 7.33267 7.64534 7.78705 7.78885 8.01409 8.45079 8.67941 9.19950 9.84013 10.39633 11.29364 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.004134 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.155367 B = 6771.970616 C = 8167.014736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.256 4.256 8 H 0.063 0.937 9 C 0.009 3.991 10 N -0.897 5.897 11 Si 0.896 3.104 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.284 1.284 15 C 0.160 3.840 16 C 0.125 3.875 17 H 0.077 0.923 18 N -0.689 5.689 19 C 0.552 3.448 20 O -0.540 6.540 21 C -0.098 4.098 22 C -0.087 4.087 23 C -0.094 4.094 24 C -0.100 4.100 25 C 0.142 3.858 26 N -0.488 5.488 27 C 0.068 3.932 28 C -0.143 4.143 29 C -0.033 4.033 30 C -0.050 4.050 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.018 0.982 37 H 0.054 0.946 38 H 0.255 0.745 39 H 0.026 0.974 40 H 0.097 0.903 41 H 0.394 0.606 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.164 0.836 45 H 0.153 0.847 46 H 0.140 0.860 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.450 -6.401 -1.695 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.309 5.309 7 C -0.385 4.385 8 H 0.081 0.919 9 C -0.190 4.190 10 N -0.541 5.541 11 Si 0.726 3.274 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.034 3.966 16 C 0.019 3.981 17 H 0.095 0.905 18 N -0.339 5.339 19 C 0.338 3.662 20 O -0.419 6.419 21 C -0.102 4.102 22 C -0.106 4.106 23 C -0.114 4.114 24 C -0.102 4.102 25 C -0.029 4.029 26 N -0.196 5.196 27 C -0.075 4.075 28 C -0.163 4.163 29 C -0.038 4.038 30 C -0.069 4.069 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.115 0.885 41 H 0.231 0.769 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.181 0.819 45 H 0.170 0.830 46 H 0.158 0.842 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.373 -6.841 -0.662 16.839 hybrid contribution 0.891 -0.116 -0.231 0.928 sum -14.482 -6.957 -0.893 16.091 Atomic orbital electron populations 1.21852 0.95960 1.01331 1.01048 1.21331 0.94601 0.99970 0.95433 0.90304 1.22091 0.99293 0.99274 0.96144 1.20938 0.90635 0.96600 0.90301 1.43972 1.48272 1.39590 0.99115 1.19022 1.09876 1.03017 1.06624 0.91930 1.24995 0.97093 0.97083 0.99843 1.69981 1.37197 1.28931 1.17949 0.86481 0.79442 0.84142 0.77382 1.20894 1.21589 1.21099 1.21203 0.86548 0.97849 0.91034 1.21849 0.99052 0.80128 0.97035 0.90474 1.45750 1.66069 1.14110 1.07977 1.18058 0.78248 0.85354 0.84504 1.90757 1.50792 1.69537 1.30767 1.20219 1.00942 0.95147 0.93923 1.21023 0.97002 0.95325 0.97233 1.20846 0.99313 0.94080 0.97164 1.19131 1.01181 0.96037 0.93841 1.23212 0.93263 0.89815 0.96655 1.67364 1.14838 1.38757 0.98612 1.22145 0.96799 0.93071 0.95503 1.21999 1.00229 0.95592 0.98454 1.18147 0.98352 0.94168 0.93151 1.21438 0.94701 0.91963 0.98821 0.93045 0.93081 0.93115 0.92697 0.92893 0.96409 0.92790 0.93520 0.95589 0.88499 0.76931 0.85131 0.84424 0.81902 0.82988 0.84194 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.05 37.15 0.34 -1.42 16 2 C -0.09 -1.41 2.48 -90.55 -0.22 -1.63 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.13 -1.92 5.20 -26.58 -0.14 -2.06 16 5 C 0.14 2.72 6.52 -3.70 -0.02 2.70 16 6 N -0.59 -13.83 2.91 -172.31 -0.50 -14.33 16 7 C -0.26 -6.79 9.58 -15.06 -0.14 -6.94 16 8 H 0.06 1.63 7.88 -52.49 -0.41 1.22 16 9 C 0.01 0.26 4.92 -17.43 -0.09 0.17 16 10 N -0.90 -26.27 11.20 55.49 0.62 -25.65 16 11 Si 0.90 22.09 29.59 -169.99 -5.03 17.06 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 15 C 0.16 3.75 4.90 -3.71 -0.02 3.73 16 16 C 0.13 2.29 2.24 -67.81 -0.15 2.14 16 17 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 18 N -0.69 -11.85 4.20 -54.62 -0.23 -12.08 16 19 C 0.55 10.30 7.74 -12.31 -0.10 10.21 16 20 O -0.54 -11.90 15.97 5.32 0.08 -11.82 16 21 C -0.10 -1.53 5.87 -104.95 -0.62 -2.15 16 22 C -0.09 -1.12 9.44 -39.55 -0.37 -1.49 16 23 C -0.09 -1.04 9.77 -39.59 -0.39 -1.42 16 24 C -0.10 -1.21 5.75 -106.78 -0.61 -1.82 16 25 C 0.14 1.54 11.04 -16.97 -0.19 1.36 16 26 N -0.49 -5.90 10.29 -13.15 -0.14 -6.03 16 27 C 0.07 0.74 11.07 -17.97 -0.20 0.54 16 28 C -0.14 -1.62 9.88 -39.35 -0.39 -2.01 16 29 C -0.03 -0.44 5.74 -106.83 -0.61 -1.05 16 30 C -0.05 -0.74 9.38 -38.77 -0.36 -1.11 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.77 6.40 -51.93 -0.33 0.43 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 38 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.10 2.70 6.06 -51.93 -0.31 2.38 16 41 H 0.39 5.98 4.62 -40.82 -0.19 5.79 16 42 H 0.13 1.44 6.34 -52.48 -0.33 1.11 16 43 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 44 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 45 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 46 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 47 H 0.15 2.14 7.62 -52.49 -0.40 1.75 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -32.84 377.41 -10.33 -43.17 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.54 Total: 6.24 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -4.29 Total: -2.25 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.25 Total: -58.09 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.84 -10.33 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968513990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.624 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds