Wall clock time and date at job start Sat Apr 11 2020 05:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.44830 * 2 1 4 4 C 1.53104 * 109.50680 * 240.02060 * 2 1 3 5 5 C 1.53198 * 109.33164 * 178.62682 * 4 2 1 6 6 N 1.46931 * 108.77283 * 54.63607 * 5 4 2 7 7 C 1.36941 * 120.62771 * 126.41155 * 6 5 4 8 8 H 1.07989 * 120.00218 * 331.80540 * 7 6 5 9 9 C 1.38812 * 119.99588 * 151.80838 * 7 6 5 10 10 N 1.31619 * 119.99989 * 343.08363 * 9 7 6 11 11 Si 1.86796 * 120.00024 * 163.08549 * 9 7 6 12 12 H 1.48504 * 109.47297 * 59.99890 * 11 9 7 13 13 H 1.48494 * 109.47420 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47402 * 299.99871 * 11 9 7 15 15 C 1.46929 * 118.73822 * 306.39000 * 6 5 4 16 16 C 1.53039 * 109.46308 * 119.96672 * 2 1 3 17 17 H 1.09004 * 109.49919 * 301.37417 * 16 2 1 18 18 N 1.46500 * 109.49780 * 61.43543 * 16 2 1 19 19 C 1.34777 * 120.00138 * 204.93909 * 18 16 2 20 20 O 1.21551 * 120.00163 * 359.97438 * 19 18 16 21 21 C 1.47886 * 119.99987 * 179.97438 * 19 18 16 22 22 C 1.40594 * 119.73102 * 0.02562 * 21 19 18 23 23 C 1.35850 * 120.95285 * 179.97438 * 22 21 19 24 24 C 1.40488 * 119.87954 * 0.02562 * 23 22 21 25 25 C 1.40488 * 121.83899 * 180.02562 * 24 23 22 26 26 N 1.31210 * 119.93859 * 179.72628 * 25 24 23 27 27 C 1.32553 * 122.80673 * 0.25552 * 26 25 24 28 28 C 1.36222 * 121.84736 * 359.97438 * 27 26 25 29 29 C 1.40761 * 118.67287 * 0.02562 * 28 27 26 30 30 C 1.38546 * 119.72835 * 180.51892 * 21 19 18 31 31 H 1.08999 * 109.47367 * 300.03109 * 1 2 3 32 32 H 1.09004 * 109.47330 * 60.03589 * 1 2 3 33 33 H 1.09004 * 109.46606 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.48862 * 58.67236 * 4 2 1 35 35 H 1.08993 * 109.51759 * 298.59818 * 4 2 1 36 36 H 1.09000 * 109.58846 * 294.85088 * 5 4 2 37 37 H 1.09001 * 109.70272 * 174.49267 * 5 4 2 38 38 H 0.96999 * 119.99925 * 180.02562 * 10 9 7 39 39 H 1.08993 * 109.58330 * 293.82051 * 15 6 5 40 40 H 1.09001 * 109.58037 * 173.39384 * 15 6 5 41 41 H 0.96996 * 119.99893 * 24.93432 * 18 16 2 42 42 H 1.08005 * 119.52292 * 359.97438 * 22 21 19 43 43 H 1.08005 * 120.05764 * 180.02562 * 23 22 21 44 44 H 1.08004 * 120.02922 * 0.02562 * 25 24 23 45 45 H 1.07997 * 119.07810 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.66376 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.35879 * 359.49878 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0412 -0.7211 -1.2501 5 6 3.5728 -0.6889 -1.2634 6 7 4.0686 -1.2489 0.0012 7 6 4.9772 -2.2735 0.0018 8 1 5.0054 -2.9706 -0.8224 9 6 5.8618 -2.4159 1.0620 10 7 6.0658 -1.4119 1.8883 11 14 6.7629 -4.0323 1.3159 12 1 7.5873 -4.3330 0.1179 13 1 7.6425 -3.9269 2.5076 14 1 5.7757 -5.1221 1.5237 15 6 3.5714 -0.6884 1.2651 16 6 2.0399 -0.7207 1.2500 17 1 1.6567 -0.2211 2.1399 18 7 1.5802 -2.1117 1.2342 19 6 1.4529 -2.7926 2.3904 20 8 1.7199 -2.2527 3.4462 21 6 0.9883 -4.1965 2.3744 22 6 0.6816 -4.8155 1.1499 23 6 0.2534 -6.1040 1.1063 24 6 0.1118 -6.8352 2.2975 25 6 -0.3271 -8.1697 2.3003 26 7 -0.4408 -8.8193 3.4346 27 6 -0.1616 -8.2697 4.6081 28 6 0.2667 -6.9810 4.7145 29 6 0.4135 -6.2189 3.5402 30 6 0.8492 -4.8877 3.5670 31 1 -0.3634 0.5143 0.8897 32 1 -0.3634 0.5133 -0.8903 33 1 -0.3633 -1.0277 0.0005 34 1 1.6590 -0.2213 -2.1401 35 1 1.6993 -1.7560 -1.2389 36 1 3.9157 0.3407 -1.3665 37 1 3.9456 -1.2834 -2.0975 38 1 6.6843 -1.5113 2.6289 39 1 3.9142 0.3410 1.3682 40 1 3.9412 -1.2843 2.0995 41 1 1.3674 -2.5426 0.3917 42 1 0.7879 -4.2586 0.2306 43 1 0.0221 -6.5654 0.1575 44 1 -0.5662 -8.6620 1.3692 45 1 -0.2761 -8.8604 5.5049 46 1 0.4892 -6.5525 5.6806 47 1 1.0857 -4.4094 4.5059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968513990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:35 Heat of formation + Delta-G solvation = 17.708492 kcal Electronic energy + Delta-G solvation = -29886.950687 eV Core-core repulsion = 26033.950814 eV Total energy + Delta-G solvation = -3852.999874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.96293 -41.05112 -39.28607 -37.89471 -35.96402 -34.50331 -33.97240 -32.90401 -32.43202 -30.66758 -30.62284 -28.93014 -26.32279 -25.60347 -24.79791 -23.85734 -23.22550 -22.75998 -22.11092 -20.33425 -19.52748 -18.76965 -18.52498 -17.62899 -17.28614 -16.87420 -16.56666 -16.00592 -15.94008 -15.72416 -15.44701 -15.21853 -14.97964 -14.86722 -14.63011 -14.62089 -14.60606 -14.11473 -13.82162 -13.62993 -13.40577 -13.15268 -13.03442 -13.01867 -12.71014 -12.61772 -12.49232 -12.28446 -12.11523 -11.95789 -11.56298 -11.33383 -11.27082 -11.06978 -11.03887 -10.55893 -10.52386 -10.24962 -9.92795 -9.12661 -8.64552 -7.87365 -5.31873 -0.82925 -0.34443 0.80601 1.37866 1.41797 1.46219 1.51562 2.17937 2.41140 2.47109 3.05592 3.28887 3.47377 3.51827 3.57580 3.68625 3.74649 3.83012 3.88633 3.98177 4.01471 4.07827 4.13194 4.27522 4.51888 4.58329 4.64299 4.67687 4.71854 4.73311 4.82811 4.89245 4.92950 4.96747 5.02279 5.09509 5.18106 5.21423 5.24380 5.25488 5.28624 5.47064 5.51563 5.58902 5.60519 5.68848 5.70760 5.72714 6.38470 6.61037 6.94036 7.13902 7.26816 7.87542 8.38191 9.17505 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.004134 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.155367 B = 6771.970616 C = 8167.014736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.077 0.923 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.599 5.599 7 C -0.248 4.248 8 H 0.072 0.928 9 C -0.049 4.049 10 N -0.934 5.934 11 Si 0.950 3.050 12 H -0.268 1.268 13 H -0.303 1.303 14 H -0.284 1.284 15 C 0.171 3.829 16 C 0.136 3.864 17 H 0.063 0.937 18 N -0.677 5.677 19 C 0.545 3.455 20 O -0.588 6.588 21 C -0.117 4.117 22 C -0.101 4.101 23 C -0.072 4.072 24 C -0.112 4.112 25 C 0.150 3.850 26 N -0.506 5.506 27 C 0.069 3.931 28 C -0.156 4.156 29 C -0.049 4.049 30 C -0.067 4.067 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.012 0.988 37 H 0.059 0.941 38 H 0.244 0.756 39 H -0.003 1.003 40 H 0.046 0.954 41 H 0.407 0.593 42 H 0.149 0.851 43 H 0.183 0.817 44 H 0.202 0.798 45 H 0.178 0.822 46 H 0.153 0.847 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.038 -8.686 -4.802 20.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 H 0.095 0.905 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.379 4.379 8 H 0.090 0.910 9 C -0.244 4.244 10 N -0.580 5.580 11 Si 0.779 3.221 12 H -0.193 1.193 13 H -0.229 1.229 14 H -0.211 1.211 15 C 0.044 3.956 16 C 0.029 3.971 17 H 0.081 0.919 18 N -0.328 5.328 19 C 0.333 3.667 20 O -0.470 6.470 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.091 4.091 24 C -0.114 4.114 25 C -0.021 4.021 26 N -0.214 5.214 27 C -0.073 4.073 28 C -0.176 4.176 29 C -0.054 4.054 30 C -0.086 4.086 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.030 0.970 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.015 0.985 40 H 0.065 0.935 41 H 0.246 0.754 42 H 0.167 0.833 43 H 0.200 0.800 44 H 0.219 0.781 45 H 0.195 0.805 46 H 0.171 0.829 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.994 -9.138 -3.836 20.542 hybrid contribution 1.675 0.553 0.730 1.909 sum -16.318 -8.585 -3.106 18.699 Atomic orbital electron populations 1.21769 0.92975 1.02237 1.02305 1.21292 0.96912 0.99172 0.93275 0.90502 1.21977 0.95496 1.00527 0.97452 1.21172 0.93781 0.95939 0.88125 1.44170 1.48060 1.39438 1.00617 1.19403 1.08995 1.03422 1.06033 0.91011 1.25674 0.98779 0.99523 1.00429 1.70157 1.38473 1.30774 1.18625 0.85599 0.78355 0.81026 0.77135 1.19289 1.22940 1.21074 1.20863 0.90007 0.95019 0.89721 1.21532 0.95274 0.81413 0.98850 0.91875 1.45607 1.65301 1.13560 1.08302 1.18678 0.77367 0.86639 0.84052 1.90721 1.52923 1.70905 1.32457 1.20125 1.02753 0.93535 0.95734 1.21176 0.97977 0.96428 0.96403 1.21305 0.96413 0.92925 0.98485 1.19457 1.01263 0.96928 0.93763 1.23818 0.91515 0.89076 0.97735 1.67465 1.15468 1.39217 0.99255 1.22580 0.95446 0.92944 0.96315 1.22201 1.00763 0.95938 0.98666 1.18341 0.98655 0.93548 0.94821 1.21415 0.95863 0.93090 0.98219 0.93317 0.90356 0.92384 0.88858 0.91747 0.96982 0.92236 0.94696 0.98484 0.93503 0.75416 0.83329 0.79958 0.78136 0.80466 0.82920 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.05 71.98 0.65 -2.20 16 2 C -0.09 -2.44 2.48 -10.75 -0.03 -2.47 16 3 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 4 C -0.12 -3.06 5.20 30.70 0.16 -2.90 16 5 C 0.13 4.98 6.52 86.36 0.56 5.54 16 6 N -0.60 -28.58 2.91 -699.08 -2.03 -30.62 16 7 C -0.25 -13.27 9.58 84.03 0.81 -12.47 16 8 H 0.07 3.66 7.88 -2.92 -0.02 3.64 16 9 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 10 N -0.93 -57.76 11.20 21.65 0.24 -57.52 16 11 Si 0.95 46.52 29.59 68.60 2.03 48.55 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.30 -15.31 7.11 99.48 0.71 -14.61 16 14 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 15 C 0.17 8.42 4.90 86.36 0.42 8.85 16 16 C 0.14 5.09 2.24 45.07 0.10 5.19 16 17 H 0.06 2.55 7.58 -2.38 -0.02 2.53 16 18 N -0.68 -23.34 4.20 -444.99 -1.87 -25.21 16 19 C 0.54 21.19 7.74 86.80 0.67 21.86 16 20 O -0.59 -27.97 15.97 -3.88 -0.06 -28.04 16 21 C -0.12 -3.73 5.87 -20.07 -0.12 -3.84 16 22 C -0.10 -2.38 9.44 22.29 0.21 -2.17 16 23 C -0.07 -1.32 9.77 22.26 0.22 -1.10 16 24 C -0.11 -2.43 5.75 -21.26 -0.12 -2.55 16 25 C 0.15 2.72 11.04 85.33 0.94 3.66 16 26 N -0.51 -10.81 10.29 -195.51 -2.01 -12.82 16 27 C 0.07 1.38 11.07 84.11 0.93 2.31 16 28 C -0.16 -3.44 9.88 22.42 0.22 -3.22 16 29 C -0.05 -1.27 5.74 -21.29 -0.12 -1.39 16 30 C -0.07 -2.06 9.38 22.79 0.21 -1.85 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.06 1.15 7.54 -2.39 -0.02 1.13 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.06 1.59 6.40 -2.39 -0.02 1.58 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 38 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 39 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.05 2.79 6.06 -2.39 -0.01 2.78 16 41 H 0.41 11.63 4.62 -92.71 -0.43 11.20 16 42 H 0.15 2.82 6.34 -2.91 -0.02 2.80 16 43 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 44 H 0.20 1.95 8.06 -2.91 -0.02 1.92 16 45 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 46 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 47 H 0.13 4.25 7.62 -2.91 -0.02 4.22 16 Total: -1.00 -77.42 377.41 3.00 -74.42 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.56 Total: 22.34 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 6.14 Total: 8.89 kcal Atomic # 7 Polarization: -120.49 SS G_CDS: -5.67 Total: -126.17 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.06 Total: -28.04 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -77.42 3.00 -74.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968513990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.131 kcal (2) G-P(sol) polarization free energy of solvation -77.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds