Wall clock time and date at job start Sat Apr 11 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.45036 * 2 1 4 4 C 1.53044 * 109.45891 * 119.95659 * 2 1 3 5 5 C 1.53186 * 109.31332 * 181.38616 * 4 2 1 6 6 N 1.46927 * 108.77788 * 305.36563 * 5 4 2 7 7 C 1.36931 * 120.63377 * 233.62756 * 6 5 4 8 8 H 1.08007 * 120.00187 * 31.29478 * 7 6 5 9 9 C 1.38815 * 120.00501 * 211.28814 * 7 6 5 10 10 N 1.31623 * 119.99265 * 9.94149 * 9 7 6 11 11 Si 1.86799 * 120.00379 * 189.94243 * 9 7 6 12 12 H 1.48505 * 109.46882 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47046 * 119.99699 * 11 9 7 14 14 H 1.48497 * 109.47102 * 240.00103 * 11 9 7 15 15 C 1.46927 * 118.73636 * 53.61007 * 6 5 4 16 16 C 1.53037 * 109.46070 * 240.02542 * 2 1 3 17 17 H 1.08998 * 109.49560 * 58.66606 * 16 2 1 18 18 N 1.46497 * 109.52775 * 298.58288 * 16 2 1 19 19 C 1.34777 * 120.00096 * 155.14603 * 18 16 2 20 20 O 1.21595 * 120.00127 * 0.02562 * 19 18 16 21 21 C 1.47448 * 119.99808 * 179.97438 * 19 18 16 22 22 C 1.38858 * 120.46375 * 5.80754 * 21 19 18 23 23 C 1.38905 * 120.67629 * 179.75834 * 22 21 19 24 24 C 1.36371 * 121.27267 * 0.52540 * 23 22 21 25 25 C 1.40398 * 119.98305 * 359.73686 * 24 23 22 26 26 C 1.40467 * 121.95445 * 179.97438 * 25 24 23 27 27 N 1.31277 * 119.88188 * 180.02562 * 26 25 24 28 28 C 1.32553 * 122.73855 * 0.02562 * 27 26 25 29 29 C 1.36328 * 121.81558 * 0.02562 * 28 27 26 30 30 C 1.40297 * 118.69995 * 359.97438 * 29 28 27 31 31 H 1.08997 * 109.47146 * 300.03846 * 1 2 3 32 32 H 1.08994 * 109.46638 * 60.04173 * 1 2 3 33 33 H 1.09002 * 109.47022 * 180.02562 * 1 2 3 34 34 H 1.09010 * 109.49588 * 61.43802 * 4 2 1 35 35 H 1.08995 * 109.49930 * 301.34176 * 4 2 1 36 36 H 1.09002 * 109.58937 * 65.15505 * 5 4 2 37 37 H 1.09001 * 109.59075 * 185.43578 * 5 4 2 38 38 H 0.97002 * 119.99219 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.58803 * 66.17691 * 15 6 5 40 40 H 1.08999 * 109.58688 * 186.60501 * 15 6 5 41 41 H 0.97006 * 120.00029 * 335.14639 * 18 16 2 42 42 H 1.08001 * 119.66368 * 0.02562 * 22 21 19 43 43 H 1.07999 * 119.36130 * 180.24063 * 23 22 21 44 44 H 1.08001 * 120.00757 * 179.76524 * 24 23 22 45 45 H 1.08001 * 120.06145 * 0.02562 * 26 25 24 46 46 H 1.07995 * 119.09136 * 180.02562 * 28 27 26 47 47 H 1.07996 * 120.64830 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7206 1.2502 5 6 3.5713 -0.6884 1.2645 6 7 4.0679 -1.2488 0.0003 7 6 4.9758 -2.2739 0.0004 8 1 4.9701 -3.0003 0.7997 9 6 5.9036 -2.3796 -1.0267 10 7 6.0429 -1.3969 -1.8912 11 14 6.9542 -3.9163 -1.1819 12 1 6.6072 -4.8652 -0.0936 13 1 6.7021 -4.5575 -2.4974 14 1 8.3889 -3.5476 -1.0777 15 6 3.5715 -0.6887 -1.2640 16 6 2.0399 -0.7209 -1.2499 17 1 1.6573 -0.2210 -2.1397 18 7 1.5802 -2.1118 -1.2348 19 6 1.4548 -2.7928 -2.3911 20 8 1.7237 -2.2528 -3.4469 21 6 0.9927 -4.1929 -2.3757 22 6 0.5698 -4.7817 -1.1914 23 6 0.1289 -6.0988 -1.1728 24 6 0.1074 -6.8542 -2.3079 25 6 0.5310 -6.3013 -3.5269 26 6 0.5266 -7.0417 -4.7205 27 7 0.9321 -6.4840 -5.8376 28 6 1.3560 -5.2296 -5.8999 29 6 1.3990 -4.4298 -4.7967 30 6 0.9808 -4.9571 -3.5657 31 1 -0.3633 0.5144 0.8896 32 1 -0.3632 0.5132 -0.8903 33 1 -0.3633 -1.0277 0.0005 34 1 1.6978 -1.7555 1.2386 35 1 1.6572 -0.2205 2.1399 36 1 3.9143 0.3411 1.3674 37 1 3.9416 -1.2821 2.1002 38 1 6.6915 -1.4707 -2.6088 39 1 3.9144 0.3408 -1.3672 40 1 3.9418 -1.2847 -2.0981 41 1 1.3661 -2.5427 -0.3925 42 1 0.5798 -4.2084 -0.2761 43 1 -0.1989 -6.5343 -0.2404 44 1 -0.2360 -7.8775 -2.2693 45 1 0.1903 -8.0680 -4.7193 46 1 1.6760 -4.8301 -6.8509 47 1 1.7474 -3.4102 -4.8692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968652410.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:17 Heat of formation + Delta-G solvation = 23.402178 kcal Electronic energy + Delta-G solvation = -30392.827392 eV Core-core repulsion = 26540.074416 eV Total energy + Delta-G solvation = -3852.752977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.08438 -40.86796 -39.14042 -38.09212 -35.97604 -34.48046 -33.86290 -32.87963 -32.21355 -31.24735 -30.18819 -28.90514 -26.04267 -25.55504 -24.70026 -24.34656 -23.50765 -22.75755 -21.75349 -20.36786 -19.19474 -18.89189 -18.54783 -17.54753 -17.26157 -16.91294 -16.56759 -16.27069 -15.98665 -15.69685 -15.52943 -15.16861 -15.06925 -14.84996 -14.68683 -14.56469 -14.39048 -14.07395 -13.59602 -13.48988 -13.18612 -13.02886 -13.01499 -12.90054 -12.76062 -12.67613 -12.63729 -12.48426 -12.22783 -11.95358 -11.57200 -11.31041 -11.17196 -11.06586 -10.92379 -10.60643 -10.29542 -10.15420 -9.99218 -9.09676 -8.60738 -7.87362 -5.38056 -0.85688 -0.13567 0.64897 1.35683 1.38471 1.46665 1.76032 2.16836 2.37331 2.44805 3.10659 3.29418 3.48407 3.57404 3.64410 3.68705 3.80069 3.87128 3.91532 3.96088 3.99557 4.11941 4.21245 4.39840 4.51698 4.56931 4.66489 4.71106 4.72962 4.81907 4.83265 4.90994 4.95633 4.96979 5.07880 5.10416 5.17281 5.24699 5.25898 5.27857 5.38240 5.46169 5.50871 5.59111 5.65611 5.73529 5.74507 5.81022 6.39827 6.62949 6.93831 7.13844 7.32078 7.85934 8.37418 9.16538 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009673 B = 0.004875 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.912589 B = 5742.230665 C = 7079.963656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.076 0.924 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.244 4.244 8 H 0.071 0.929 9 C -0.051 4.051 10 N -0.936 5.936 11 Si 0.952 3.048 12 H -0.256 1.256 13 H -0.307 1.307 14 H -0.291 1.291 15 C 0.172 3.828 16 C 0.136 3.864 17 H 0.062 0.938 18 N -0.678 5.678 19 C 0.549 3.451 20 O -0.582 6.582 21 C -0.159 4.159 22 C -0.042 4.042 23 C -0.128 4.128 24 C -0.044 4.044 25 C -0.136 4.136 26 C 0.150 3.850 27 N -0.512 5.512 28 C 0.065 3.935 29 C -0.185 4.185 30 C -0.012 4.012 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.012 0.988 37 H 0.059 0.941 38 H 0.243 0.757 39 H -0.005 1.005 40 H 0.049 0.951 41 H 0.405 0.595 42 H 0.150 0.850 43 H 0.178 0.822 44 H 0.186 0.814 45 H 0.209 0.791 46 H 0.161 0.839 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.365 -9.361 6.033 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.094 0.906 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.375 4.375 8 H 0.089 0.911 9 C -0.246 4.246 10 N -0.582 5.582 11 Si 0.781 3.219 12 H -0.180 1.180 13 H -0.235 1.235 14 H -0.217 1.217 15 C 0.045 3.955 16 C 0.030 3.970 17 H 0.080 0.920 18 N -0.329 5.329 19 C 0.338 3.662 20 O -0.464 6.464 21 C -0.163 4.163 22 C -0.062 4.062 23 C -0.146 4.146 24 C -0.063 4.063 25 C -0.138 4.138 26 C -0.022 4.022 27 N -0.221 5.221 28 C -0.076 4.076 29 C -0.204 4.204 30 C -0.017 4.017 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.030 0.970 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.013 0.987 40 H 0.067 0.933 41 H 0.244 0.756 42 H 0.168 0.832 43 H 0.196 0.804 44 H 0.203 0.797 45 H 0.226 0.774 46 H 0.179 0.821 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.995 -9.284 4.381 20.717 hybrid contribution 1.570 0.460 0.116 1.640 sum -16.425 -8.824 4.497 19.180 Atomic orbital electron populations 1.21766 0.92990 1.02214 1.02264 1.21280 0.96902 0.99138 0.93336 0.90603 1.21967 0.95548 1.00477 0.97433 1.21166 0.93749 0.95919 0.88164 1.44132 1.48379 1.39238 1.00591 1.19456 1.07002 1.02607 1.08426 0.91116 1.25830 0.99075 0.99654 1.00067 1.70135 1.37420 1.32408 1.18262 0.85414 0.78772 0.80530 0.77135 1.17986 1.23476 1.21749 1.20874 0.89846 0.94948 0.89864 1.21523 0.95376 0.81402 0.98733 0.92009 1.45589 1.65574 1.13550 1.08151 1.18475 0.77224 0.86439 0.84034 1.90555 1.53301 1.70743 1.31836 1.19896 1.07314 0.93729 0.95319 1.21878 0.91804 0.96535 0.96004 1.21329 0.99803 0.92620 1.00833 1.21710 0.93397 1.01671 0.89555 1.19351 1.03249 0.93174 0.98061 1.23947 0.91906 1.00668 0.85649 1.67461 1.11659 1.12382 1.30551 1.22434 0.96675 0.89563 0.98963 1.22810 1.00625 1.03458 0.93496 1.18239 0.96178 0.94147 0.93180 0.90335 0.93412 0.92378 0.91797 0.88857 0.96999 0.92243 0.94736 0.98683 0.93277 0.75618 0.83227 0.80420 0.79708 0.77405 0.82134 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.05 71.98 0.65 -2.23 16 2 C -0.09 -2.48 2.48 -10.77 -0.03 -2.51 16 3 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.12 -3.09 5.20 30.67 0.16 -2.93 16 5 C 0.13 5.03 6.51 86.36 0.56 5.59 16 6 N -0.60 -28.87 2.91 -699.08 -2.03 -30.90 16 7 C -0.24 -13.16 9.59 84.04 0.81 -12.35 16 8 H 0.07 3.64 7.85 -2.91 -0.02 3.62 16 9 C -0.05 -2.95 5.07 84.86 0.43 -2.52 16 10 N -0.94 -58.41 11.00 21.65 0.24 -58.17 16 11 Si 0.95 46.96 29.57 68.60 2.03 48.98 16 12 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 14 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 15 C 0.17 8.56 4.85 86.37 0.42 8.98 16 16 C 0.14 5.17 2.24 45.07 0.10 5.27 16 17 H 0.06 2.53 7.58 -2.39 -0.02 2.51 16 18 N -0.68 -23.67 4.21 -445.42 -1.87 -25.54 16 19 C 0.55 21.77 7.70 86.67 0.67 22.43 16 20 O -0.58 -27.73 13.16 -4.01 -0.05 -27.78 16 21 C -0.16 -5.23 5.90 -19.92 -0.12 -5.35 16 22 C -0.04 -0.95 9.51 22.58 0.21 -0.73 16 23 C -0.13 -1.96 9.92 21.99 0.22 -1.74 16 24 C -0.04 -0.67 9.79 22.36 0.22 -0.46 16 25 C -0.14 -3.35 5.74 -21.33 -0.12 -3.47 16 26 C 0.15 3.38 11.05 85.32 0.94 4.33 16 27 N -0.51 -14.94 10.30 -195.40 -2.01 -16.96 16 28 C 0.07 2.13 11.07 84.14 0.93 3.06 16 29 C -0.18 -6.88 9.28 22.32 0.21 -6.68 16 30 C -0.01 -0.39 5.77 -21.11 -0.12 -0.51 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.16 7.54 -2.39 -0.02 1.14 16 34 H 0.06 1.59 6.41 -2.38 -0.02 1.58 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 37 H 0.06 2.13 7.94 -2.39 -0.02 2.11 16 38 H 0.24 15.04 8.31 -92.71 -0.77 14.26 16 39 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 40 H 0.05 2.97 6.07 -2.39 -0.01 2.95 16 41 H 0.41 11.70 4.71 -92.70 -0.44 11.26 16 42 H 0.15 2.64 6.43 -2.91 -0.02 2.62 16 43 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 44 H 0.19 1.02 8.06 -2.91 -0.02 0.99 16 45 H 0.21 2.49 8.06 -2.91 -0.02 2.47 16 46 H 0.16 4.58 8.06 -2.91 -0.02 4.56 16 47 H 0.15 6.28 5.06 -2.91 -0.01 6.27 16 Total: -1.00 -80.67 372.15 3.00 -77.67 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.56 Total: 24.51 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 6.14 Total: 8.18 kcal Atomic # 7 Polarization: -125.89 SS G_CDS: -5.68 Total: -131.57 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.05 Total: -27.78 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -80.67 3.00 -77.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968652410.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.076 kcal (2) G-P(sol) polarization free energy of solvation -80.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds