Wall clock time and date at job start Sat Apr 11 2020 05:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46119 * 2 1 4 4 C 1.53041 * 109.46027 * 119.95998 * 2 1 3 5 5 C 1.53196 * 109.31273 * 181.38637 * 4 2 1 6 6 N 1.46930 * 108.77275 * 305.36515 * 5 4 2 7 7 C 1.36936 * 120.62721 * 233.58536 * 6 5 4 8 8 H 1.08000 * 120.00130 * 27.68781 * 7 6 5 9 9 C 1.38811 * 119.99945 * 207.68720 * 7 6 5 10 10 N 1.31620 * 120.00049 * 17.36741 * 9 7 6 11 11 Si 1.86802 * 119.99966 * 197.36937 * 9 7 6 12 12 H 1.48495 * 109.47234 * 89.99796 * 11 9 7 13 13 H 1.48504 * 109.47286 * 209.99680 * 11 9 7 14 14 H 1.48496 * 109.47200 * 329.99705 * 11 9 7 15 15 C 1.46926 * 118.74109 * 53.61072 * 6 5 4 16 16 C 1.53048 * 109.46109 * 240.02755 * 2 1 3 17 17 H 1.09004 * 109.49391 * 298.59493 * 16 2 1 18 18 N 1.46497 * 109.49750 * 58.66092 * 16 2 1 19 19 C 1.34770 * 120.00241 * 205.00473 * 18 16 2 20 20 O 1.21603 * 119.99789 * 359.97438 * 19 18 16 21 21 C 1.47446 * 120.00450 * 180.02562 * 19 18 16 22 22 C 1.38955 * 121.16740 * 0.02562 * 21 19 18 23 23 N 1.32190 * 121.31582 * 179.97438 * 22 21 19 24 24 C 1.31193 * 123.69963 * 0.02562 * 23 22 21 25 25 C 1.40386 * 120.91336 * 359.96888 * 24 23 22 26 26 C 1.40398 * 122.14303 * 180.02562 * 25 24 23 27 27 C 1.36232 * 119.48833 * 180.02562 * 26 25 24 28 28 C 1.39290 * 121.10306 * 359.97438 * 27 26 25 29 29 C 1.36441 * 120.94889 * 359.97438 * 28 27 26 30 30 C 1.39690 * 119.43641 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47013 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46999 * 299.97482 * 1 2 3 33 33 H 1.08999 * 109.47341 * 59.97323 * 1 2 3 34 34 H 1.09003 * 109.49426 * 301.33444 * 4 2 1 35 35 H 1.08996 * 109.49779 * 61.43863 * 4 2 1 36 36 H 1.08996 * 109.58616 * 65.14896 * 5 4 2 37 37 H 1.08996 * 109.58766 * 185.43717 * 5 4 2 38 38 H 0.97005 * 120.00005 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.58614 * 186.60453 * 15 6 5 40 40 H 1.08997 * 109.58777 * 66.17658 * 15 6 5 41 41 H 0.97000 * 120.00036 * 25.00247 * 18 16 2 42 42 H 1.07998 * 119.34030 * 0.02562 * 22 21 19 43 43 H 1.08006 * 119.54607 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.25662 * 0.30695 * 26 25 24 45 45 H 1.07994 * 119.44839 * 180.02562 * 27 26 25 46 46 H 1.08004 * 119.52739 * 180.02562 * 28 27 26 47 47 H 1.08005 * 120.28069 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7206 1.2502 5 6 3.5714 -0.6884 1.2643 6 7 4.0679 -1.2488 0.0001 7 6 4.9764 -2.2733 0.0002 8 1 5.0097 -2.9655 0.8286 9 6 5.8547 -2.4223 -1.0644 10 7 6.0604 -1.4205 -1.8929 11 14 6.7445 -4.0446 -1.3211 12 1 5.9274 -4.9245 -2.1947 13 1 8.0591 -3.7918 -1.9640 14 1 6.9545 -4.7071 -0.0088 15 6 3.5714 -0.6887 -1.2642 16 6 2.0399 -0.7209 -1.2501 17 1 1.6974 -1.7557 -1.2384 18 7 1.5256 -0.0490 -2.4460 19 6 1.3970 -0.7327 -3.6003 20 8 1.7084 -1.9071 -3.6492 21 6 0.8799 -0.0563 -4.8041 22 6 0.5184 1.2851 -4.7760 23 7 0.0550 1.8945 -5.8536 24 6 -0.1011 1.3027 -7.0141 25 6 0.2257 -0.0522 -7.1825 26 6 0.0696 -0.7109 -8.4125 27 6 0.4035 -2.0277 -8.5151 28 6 0.8979 -2.7321 -7.4198 29 6 1.0632 -2.1229 -6.2102 30 6 0.7307 -0.7734 -6.0701 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3634 0.5142 -0.8897 34 1 1.6572 -0.2204 2.1398 35 1 1.6979 -1.7555 1.2385 36 1 3.9143 0.3411 1.3673 37 1 3.9417 -1.2822 2.1000 38 1 6.6738 -1.5248 -2.6371 39 1 3.9417 -1.2847 -2.0983 40 1 3.9143 0.3408 -1.3675 41 1 1.2775 0.8879 -2.4070 42 1 0.6188 1.8410 -3.8556 43 1 -0.4855 1.8659 -7.8517 44 1 -0.3079 -0.1767 -9.2718 45 1 0.2835 -2.5337 -9.4616 46 1 1.1550 -3.7753 -7.5299 47 1 1.4479 -2.6793 -5.3683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968677893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:30 Heat of formation + Delta-G solvation = 40.878988 kcal Electronic energy + Delta-G solvation = -29628.033300 eV Core-core repulsion = 25776.038175 eV Total energy + Delta-G solvation = -3851.995125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.93128 -39.37488 -37.58157 -37.43933 -34.41600 -33.25425 -32.75357 -31.27029 -31.00340 -30.10027 -28.58453 -27.34184 -25.05812 -24.05314 -23.58507 -23.01395 -21.97536 -21.03196 -20.39442 -19.40247 -18.08818 -17.47207 -17.39302 -16.80082 -16.00457 -15.47383 -15.02770 -14.96201 -14.69608 -14.44864 -13.91846 -13.86939 -13.74360 -13.64304 -13.39926 -13.28956 -12.99667 -12.84445 -12.42288 -12.27955 -12.05187 -11.98523 -11.66634 -11.60262 -11.47554 -10.90346 -10.73226 -10.67347 -10.45389 -10.16285 -10.12444 -10.03557 -9.94031 -9.81441 -9.51795 -9.20479 -9.19144 -8.63017 -8.42919 -8.18635 -6.66730 -5.75823 -3.19018 -0.01798 0.77249 1.60893 2.80092 3.29493 3.38196 3.43488 3.49593 3.49990 4.02832 4.11761 4.40503 4.52674 4.57839 4.58287 4.75435 4.94032 5.06516 5.11940 5.17931 5.24163 5.36758 5.38763 5.47133 5.53926 5.59823 5.64788 5.84651 5.89460 5.97871 5.98669 6.02734 6.09944 6.22442 6.25026 6.36443 6.40533 6.43552 6.46498 6.52874 6.70437 6.73155 6.78076 6.92651 6.95966 7.27478 7.71359 7.73074 7.80222 7.85764 8.46774 8.53444 9.22584 9.86626 10.41274 11.32097 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010885 B = 0.003837 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.639091 B = 7294.934441 C = 9096.321811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.257 4.257 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.899 5.899 11 Si 0.901 3.099 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.279 1.279 15 C 0.166 3.834 16 C 0.124 3.876 17 H 0.085 0.915 18 N -0.709 5.709 19 C 0.562 3.438 20 O -0.524 6.524 21 C -0.160 4.160 22 C 0.113 3.887 23 N -0.496 5.496 24 C 0.168 3.832 25 C -0.120 4.120 26 C -0.094 4.094 27 C -0.117 4.117 28 C -0.102 4.102 29 C -0.105 4.105 30 C 0.010 3.990 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.018 0.982 37 H 0.056 0.944 38 H 0.253 0.747 39 H 0.096 0.904 40 H 0.017 0.983 41 H 0.391 0.609 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.133 0.867 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.330 5.110 -9.366 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.086 0.914 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.386 4.386 8 H 0.084 0.916 9 C -0.192 4.192 10 N -0.543 5.543 11 Si 0.731 3.269 12 H -0.213 1.213 13 H -0.218 1.218 14 H -0.204 1.204 15 C 0.039 3.961 16 C 0.019 3.981 17 H 0.103 0.897 18 N -0.359 5.359 19 C 0.348 3.652 20 O -0.401 6.401 21 C -0.165 4.165 22 C -0.031 4.031 23 N -0.203 5.203 24 C -0.004 4.004 25 C -0.122 4.122 26 C -0.114 4.114 27 C -0.135 4.135 28 C -0.121 4.121 29 C -0.122 4.122 30 C 0.005 3.995 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.035 0.965 41 H 0.226 0.774 42 H 0.174 0.826 43 H 0.181 0.819 44 H 0.151 0.849 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.122 5.130 -9.242 18.451 hybrid contribution 0.619 -1.091 -0.360 1.305 sum -14.503 4.039 -9.603 17.857 Atomic orbital electron populations 1.21857 0.95965 1.01608 1.00770 1.21316 0.94591 0.99732 0.95544 0.91415 1.22069 0.98945 1.00049 0.95408 1.20964 0.90806 0.96510 0.90177 1.43957 1.48064 1.39858 0.99148 1.19159 1.09784 1.03252 1.06432 0.91553 1.25019 0.97117 0.97366 0.99665 1.70018 1.37528 1.29011 1.17696 0.86311 0.78704 0.83865 0.78029 1.21268 1.21789 1.20395 1.21104 0.86317 0.97549 0.91111 1.22071 0.98460 0.96429 0.81116 0.89730 1.45988 1.65470 1.13907 1.10518 1.17727 0.78429 0.86517 0.82558 1.90675 1.49842 1.15817 1.83807 1.22081 1.04384 0.95539 0.94478 1.22712 0.93104 0.90629 0.96652 1.67070 1.14043 1.39762 0.99457 1.23224 0.91892 0.90425 0.94846 1.19006 1.02844 0.95705 0.94683 1.20915 0.99712 0.94962 0.95846 1.20985 0.98865 0.94646 0.99035 1.21198 0.97660 1.00554 0.92695 1.21913 0.97035 0.93635 0.99627 1.18939 0.95421 0.94147 0.90997 0.92897 0.93037 0.93289 0.92554 0.92075 0.96404 0.92580 0.93654 0.88621 0.96464 0.77433 0.82581 0.81859 0.84904 0.85624 0.85367 0.81476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.02 37.16 0.34 -1.52 16 2 C -0.09 -1.45 2.27 -90.57 -0.21 -1.66 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.12 -2.07 5.36 -26.61 -0.14 -2.21 16 5 C 0.14 2.90 6.51 -3.71 -0.02 2.88 16 6 N -0.59 -14.78 2.99 -172.32 -0.52 -15.29 16 7 C -0.26 -7.17 9.59 -15.06 -0.14 -7.32 16 8 H 0.07 1.81 7.89 -52.49 -0.41 1.40 16 9 C 0.01 0.21 4.91 -17.43 -0.09 0.13 16 10 N -0.90 -26.80 11.19 55.49 0.62 -26.18 16 11 Si 0.90 22.46 29.59 -169.99 -5.03 17.43 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.17 4.00 4.89 -3.71 -0.02 3.99 16 16 C 0.12 2.36 2.06 -67.81 -0.14 2.22 16 17 H 0.08 1.83 7.58 -51.93 -0.39 1.44 16 18 N -0.71 -11.47 4.32 -54.76 -0.24 -11.70 16 19 C 0.56 10.01 7.74 -12.51 -0.10 9.91 16 20 O -0.52 -11.23 13.40 5.28 0.07 -11.16 16 21 C -0.16 -2.44 6.07 -102.66 -0.62 -3.06 16 22 C 0.11 1.47 10.71 -17.13 -0.18 1.29 16 23 N -0.50 -6.23 10.22 -12.58 -0.13 -6.36 16 24 C 0.17 1.80 11.00 -17.02 -0.19 1.61 16 25 C -0.12 -1.44 5.74 -106.89 -0.61 -2.05 16 26 C -0.09 -0.89 9.82 -39.49 -0.39 -1.27 16 27 C -0.12 -1.12 9.94 -39.91 -0.40 -1.52 16 28 C -0.10 -1.20 9.96 -39.84 -0.40 -1.59 16 29 C -0.10 -1.57 9.32 -39.69 -0.37 -1.94 16 30 C 0.01 0.15 5.90 -104.75 -0.62 -0.46 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.57 7.36 -51.93 -0.38 0.19 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 1.13 7.94 -51.93 -0.41 0.71 16 38 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.10 2.73 6.04 -51.93 -0.31 2.41 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.39 5.04 6.41 -40.82 -0.26 4.78 16 42 H 0.16 1.63 6.44 -52.49 -0.34 1.29 16 43 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 45 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 47 H 0.17 2.91 5.24 -52.48 -0.28 2.64 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -33.57 376.28 -10.42 -43.99 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.58 Total: 6.18 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -4.30 Total: -2.59 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.26 Total: -59.53 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.57 -10.42 -43.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968677893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.871 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds