Wall clock time and date at job start Sat Apr 11 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46119 * 2 1 4 4 C 1.53041 * 109.46027 * 119.95998 * 2 1 3 5 5 C 1.53196 * 109.31273 * 181.38637 * 4 2 1 6 6 N 1.46930 * 108.77275 * 305.36515 * 5 4 2 7 7 C 1.36936 * 120.62721 * 233.58536 * 6 5 4 8 8 H 1.08000 * 120.00130 * 27.68781 * 7 6 5 9 9 C 1.38811 * 119.99945 * 207.68720 * 7 6 5 10 10 N 1.31620 * 120.00049 * 17.36741 * 9 7 6 11 11 Si 1.86802 * 119.99966 * 197.36937 * 9 7 6 12 12 H 1.48495 * 109.47234 * 89.99796 * 11 9 7 13 13 H 1.48504 * 109.47286 * 209.99680 * 11 9 7 14 14 H 1.48496 * 109.47200 * 329.99705 * 11 9 7 15 15 C 1.46926 * 118.74109 * 53.61072 * 6 5 4 16 16 C 1.53048 * 109.46109 * 240.02755 * 2 1 3 17 17 H 1.09004 * 109.49391 * 298.59493 * 16 2 1 18 18 N 1.46497 * 109.49750 * 58.66092 * 16 2 1 19 19 C 1.34770 * 120.00241 * 205.00473 * 18 16 2 20 20 O 1.21603 * 119.99789 * 359.97438 * 19 18 16 21 21 C 1.47446 * 120.00450 * 180.02562 * 19 18 16 22 22 C 1.38955 * 121.16740 * 0.02562 * 21 19 18 23 23 N 1.32190 * 121.31582 * 179.97438 * 22 21 19 24 24 C 1.31193 * 123.69963 * 0.02562 * 23 22 21 25 25 C 1.40386 * 120.91336 * 359.96888 * 24 23 22 26 26 C 1.40398 * 122.14303 * 180.02562 * 25 24 23 27 27 C 1.36232 * 119.48833 * 180.02562 * 26 25 24 28 28 C 1.39290 * 121.10306 * 359.97438 * 27 26 25 29 29 C 1.36441 * 120.94889 * 359.97438 * 28 27 26 30 30 C 1.39690 * 119.43641 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47013 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46999 * 299.97482 * 1 2 3 33 33 H 1.08999 * 109.47341 * 59.97323 * 1 2 3 34 34 H 1.09003 * 109.49426 * 301.33444 * 4 2 1 35 35 H 1.08996 * 109.49779 * 61.43863 * 4 2 1 36 36 H 1.08996 * 109.58616 * 65.14896 * 5 4 2 37 37 H 1.08996 * 109.58766 * 185.43717 * 5 4 2 38 38 H 0.97005 * 120.00005 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.58614 * 186.60453 * 15 6 5 40 40 H 1.08997 * 109.58777 * 66.17658 * 15 6 5 41 41 H 0.97000 * 120.00036 * 25.00247 * 18 16 2 42 42 H 1.07998 * 119.34030 * 0.02562 * 22 21 19 43 43 H 1.08006 * 119.54607 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.25662 * 0.30695 * 26 25 24 45 45 H 1.07994 * 119.44839 * 180.02562 * 27 26 25 46 46 H 1.08004 * 119.52739 * 180.02562 * 28 27 26 47 47 H 1.08005 * 120.28069 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7206 1.2502 5 6 3.5714 -0.6884 1.2643 6 7 4.0679 -1.2488 0.0001 7 6 4.9764 -2.2733 0.0002 8 1 5.0097 -2.9655 0.8286 9 6 5.8547 -2.4223 -1.0644 10 7 6.0604 -1.4205 -1.8929 11 14 6.7445 -4.0446 -1.3211 12 1 5.9274 -4.9245 -2.1947 13 1 8.0591 -3.7918 -1.9640 14 1 6.9545 -4.7071 -0.0088 15 6 3.5714 -0.6887 -1.2642 16 6 2.0399 -0.7209 -1.2501 17 1 1.6974 -1.7557 -1.2384 18 7 1.5256 -0.0490 -2.4460 19 6 1.3970 -0.7327 -3.6003 20 8 1.7084 -1.9071 -3.6492 21 6 0.8799 -0.0563 -4.8041 22 6 0.5184 1.2851 -4.7760 23 7 0.0550 1.8945 -5.8536 24 6 -0.1011 1.3027 -7.0141 25 6 0.2257 -0.0522 -7.1825 26 6 0.0696 -0.7109 -8.4125 27 6 0.4035 -2.0277 -8.5151 28 6 0.8979 -2.7321 -7.4198 29 6 1.0632 -2.1229 -6.2102 30 6 0.7307 -0.7734 -6.0701 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3634 0.5142 -0.8897 34 1 1.6572 -0.2204 2.1398 35 1 1.6979 -1.7555 1.2385 36 1 3.9143 0.3411 1.3673 37 1 3.9417 -1.2822 2.1000 38 1 6.6738 -1.5248 -2.6371 39 1 3.9417 -1.2847 -2.0983 40 1 3.9143 0.3408 -1.3675 41 1 1.2775 0.8879 -2.4070 42 1 0.6188 1.8410 -3.8556 43 1 -0.4855 1.8659 -7.8517 44 1 -0.3079 -0.1767 -9.2718 45 1 0.2835 -2.5337 -9.4616 46 1 1.1550 -3.7753 -7.5299 47 1 1.4479 -2.6793 -5.3683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968677893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:29 Heat of formation + Delta-G solvation = 19.435878 kcal Electronic energy + Delta-G solvation = -29628.963143 eV Core-core repulsion = 25776.038175 eV Total energy + Delta-G solvation = -3852.924969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.96849 -40.72909 -39.11281 -38.36205 -36.15669 -34.81407 -33.78752 -32.85937 -32.18956 -31.28793 -29.97630 -28.98498 -26.27448 -25.75879 -24.52080 -24.21821 -23.27428 -22.64857 -21.78865 -20.92328 -19.08616 -18.77413 -18.56460 -18.40771 -17.23030 -16.82871 -16.67353 -16.15537 -15.97575 -15.70781 -15.47619 -15.32632 -15.11518 -14.84565 -14.75744 -14.50939 -14.36359 -14.10808 -13.70015 -13.54779 -13.30990 -13.18753 -13.08571 -12.92385 -12.79336 -12.61469 -12.44004 -12.36306 -12.17966 -11.91877 -11.66557 -11.45121 -11.24377 -11.11609 -11.02337 -10.59100 -10.41224 -10.18318 -10.09677 -9.15790 -8.73021 -7.92667 -5.38317 -0.97594 -0.15283 0.65051 1.37301 1.42565 1.48714 1.74834 2.03004 2.20793 2.46010 3.04670 3.20555 3.24511 3.49192 3.59686 3.68960 3.75365 3.79171 3.86483 3.96651 4.01040 4.13977 4.25065 4.30447 4.44524 4.48620 4.53551 4.61963 4.65697 4.71197 4.75251 4.90135 4.95712 5.01260 5.06370 5.10776 5.15707 5.20088 5.25734 5.37453 5.40245 5.42677 5.50188 5.50940 5.56869 5.58808 5.74852 5.88837 6.32202 6.50196 6.79963 7.07846 7.20748 7.81591 8.30654 9.12064 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010885 B = 0.003837 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.639091 B = 7294.934441 C = 9096.321811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 H 0.081 0.919 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.609 5.609 7 C -0.264 4.264 8 H 0.069 0.931 9 C -0.049 4.049 10 N -0.931 5.931 11 Si 0.960 3.040 12 H -0.295 1.295 13 H -0.291 1.291 14 H -0.260 1.260 15 C 0.179 3.821 16 C 0.142 3.858 17 H 0.051 0.949 18 N -0.698 5.698 19 C 0.557 3.443 20 O -0.574 6.574 21 C -0.202 4.202 22 C 0.132 3.868 23 N -0.515 5.515 24 C 0.192 3.808 25 C -0.138 4.138 26 C -0.070 4.070 27 C -0.124 4.124 28 C -0.091 4.091 29 C -0.155 4.155 30 C -0.010 4.010 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.022 0.978 37 H 0.056 0.944 38 H 0.246 0.754 39 H 0.043 0.957 40 H -0.001 1.001 41 H 0.409 0.591 42 H 0.177 0.823 43 H 0.215 0.785 44 H 0.183 0.817 45 H 0.165 0.835 46 H 0.140 0.860 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.126 7.093 -10.955 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.099 0.901 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.333 5.333 7 C -0.395 4.395 8 H 0.087 0.913 9 C -0.245 4.245 10 N -0.577 5.577 11 Si 0.788 3.212 12 H -0.222 1.222 13 H -0.217 1.217 14 H -0.184 1.184 15 C 0.052 3.948 16 C 0.036 3.964 17 H 0.070 0.930 18 N -0.349 5.349 19 C 0.346 3.654 20 O -0.455 6.455 21 C -0.207 4.207 22 C -0.012 4.012 23 N -0.223 5.223 24 C 0.021 3.979 25 C -0.140 4.140 26 C -0.090 4.090 27 C -0.141 4.141 28 C -0.110 4.110 29 C -0.173 4.173 30 C -0.015 4.015 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.017 0.983 41 H 0.247 0.753 42 H 0.193 0.807 43 H 0.231 0.769 44 H 0.201 0.799 45 H 0.183 0.817 46 H 0.158 0.842 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.950 7.149 -10.793 22.132 hybrid contribution 1.447 -1.687 0.003 2.222 sum -16.503 5.463 -10.790 20.460 Atomic orbital electron populations 1.21776 0.92978 1.01659 1.02852 1.21287 0.96929 0.99470 0.92774 0.90079 1.21969 0.95662 1.00249 0.97559 1.21185 0.93601 0.96237 0.87936 1.44241 1.48125 1.39871 1.01019 1.19523 1.09629 1.04015 1.06284 0.91294 1.25770 0.98589 1.00247 0.99865 1.70178 1.38533 1.30805 1.18176 0.85368 0.77242 0.80215 0.78350 1.22248 1.21746 1.18400 1.20776 0.89682 0.94976 0.89347 1.21549 0.94842 0.95921 0.84109 0.93047 1.45768 1.64988 1.14646 1.09502 1.18301 0.77458 0.86095 0.83576 1.90663 1.52014 1.18131 1.84666 1.21858 1.08245 0.96790 0.93800 1.22996 0.90900 0.89478 0.97801 1.67243 1.15432 1.39645 0.99971 1.24075 0.88522 0.89934 0.95332 1.19347 1.03372 0.96464 0.94820 1.21505 0.96746 0.94798 0.95902 1.21389 0.98207 0.95089 0.99460 1.21486 0.95936 1.01315 0.92272 1.21664 1.00918 0.94588 1.00106 1.19191 0.96005 0.94273 0.92054 0.93900 0.90120 0.92035 0.88374 0.93127 0.95988 0.92516 0.94481 0.93892 0.98326 0.75288 0.80659 0.76902 0.79934 0.81736 0.84229 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.02 71.98 0.65 -2.50 16 2 C -0.09 -2.59 2.27 -10.76 -0.02 -2.62 16 3 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 4 C -0.12 -3.66 5.36 30.67 0.16 -3.50 16 5 C 0.14 5.56 6.51 86.36 0.56 6.13 16 6 N -0.61 -32.06 2.99 -699.10 -2.09 -34.15 16 7 C -0.26 -15.43 9.59 84.03 0.81 -14.62 16 8 H 0.07 3.89 7.89 -2.91 -0.02 3.87 16 9 C -0.05 -2.94 4.91 84.86 0.42 -2.53 16 10 N -0.93 -59.12 11.19 21.65 0.24 -58.88 16 11 Si 0.96 48.43 29.59 68.60 2.03 50.46 16 12 H -0.29 -15.18 7.11 99.48 0.71 -14.47 16 13 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 14 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 15 C 0.18 9.26 4.89 86.36 0.42 9.68 16 16 C 0.14 5.69 2.06 45.07 0.09 5.78 16 17 H 0.05 2.41 7.58 -2.38 -0.02 2.40 16 18 N -0.70 -23.90 4.32 -445.41 -1.93 -25.83 16 19 C 0.56 21.76 7.74 86.67 0.67 22.44 16 20 O -0.57 -27.80 13.40 -4.04 -0.05 -27.85 16 21 C -0.20 -6.49 6.07 -18.59 -0.11 -6.61 16 22 C 0.13 3.35 10.71 84.81 0.91 4.26 16 23 N -0.52 -11.67 10.22 -193.72 -1.98 -13.65 16 24 C 0.19 3.39 11.00 85.31 0.94 4.33 16 25 C -0.14 -2.98 5.74 -21.33 -0.12 -3.10 16 26 C -0.07 -1.02 9.82 22.33 0.22 -0.80 16 27 C -0.12 -1.99 9.94 22.06 0.22 -1.77 16 28 C -0.09 -2.16 9.96 22.10 0.22 -1.94 16 29 C -0.15 -5.09 9.32 22.20 0.21 -4.88 16 30 C -0.01 -0.31 5.90 -19.95 -0.12 -0.43 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.28 7.36 -2.39 -0.02 1.27 16 34 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 2.28 7.94 -2.39 -0.02 2.26 16 38 H 0.25 15.29 8.31 -92.70 -0.77 14.52 16 39 H 0.04 2.67 6.04 -2.39 -0.01 2.66 16 40 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.41 10.64 6.41 -92.71 -0.59 10.05 16 42 H 0.18 3.47 6.44 -2.91 -0.02 3.45 16 43 H 0.21 1.52 8.06 -2.91 -0.02 1.49 16 44 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 45 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 46 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 47 H 0.13 5.15 5.24 -2.91 -0.02 5.13 16 Total: -1.00 -83.37 376.28 2.74 -80.63 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.40 Total: 21.95 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 6.12 Total: 7.33 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -5.76 Total: -132.51 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.05 Total: -27.85 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -83.37 2.74 -80.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968677893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.064 kcal (2) G-P(sol) polarization free energy of solvation -83.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds