Wall clock time and date at job start Sat Apr 11 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47325 * 2 1 4 4 N 1.46508 * 109.47026 * 120.00027 * 2 1 3 5 5 C 1.34781 * 119.99755 * 274.99489 * 4 2 1 6 6 O 1.21641 * 119.99679 * 0.02562 * 5 4 2 7 7 C 1.47132 * 119.99691 * 179.97438 * 5 4 2 8 8 C 1.36618 * 126.97648 * 359.97438 * 7 5 4 9 9 N 1.34706 * 108.68090 * 180.02562 * 8 7 5 10 10 H 0.97004 * 124.72114 * 180.02562 * 9 8 7 11 11 C 1.36212 * 110.54835 * 0.26453 * 9 8 7 12 12 C 1.35745 * 108.68080 * 359.56046 * 11 9 8 13 13 C 1.48280 * 126.98122 * 180.15448 * 12 11 9 14 14 C 1.39394 * 120.12213 * 130.03862 * 13 12 11 15 15 C 1.38008 * 119.86959 * 179.67652 * 14 13 12 16 16 C 1.38332 * 120.12383 * 0.62520 * 15 14 13 17 17 C 1.38334 * 120.25711 * 359.67189 * 16 15 14 18 18 C 1.37996 * 120.12453 * 0.02562 * 17 16 15 19 19 C 1.53004 * 109.47344 * 239.99796 * 2 1 3 20 20 C 1.53944 * 113.74173 * 158.74023 * 19 2 1 21 21 N 1.47816 * 86.03556 * 222.08617 * 20 19 2 22 22 C 1.36929 * 134.45481 * 204.64696 * 21 20 19 23 23 H 1.08001 * 120.00036 * 173.34676 * 22 21 20 24 24 C 1.38811 * 120.00287 * 353.34385 * 22 21 20 25 25 N 1.31618 * 120.00041 * 5.06964 * 24 22 21 26 26 Si 1.86802 * 120.00171 * 185.06367 * 24 22 21 27 27 H 1.48494 * 109.46954 * 94.98993 * 26 24 22 28 28 H 1.48496 * 109.47019 * 214.98856 * 26 24 22 29 29 H 1.48500 * 109.47252 * 334.99162 * 26 24 22 30 30 C 1.47588 * 91.04912 * 24.55071 * 21 20 19 31 31 H 1.09007 * 109.47002 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47308 * 299.99625 * 1 2 3 33 33 H 1.08993 * 109.47256 * 60.00096 * 1 2 3 34 34 H 0.96993 * 119.99827 * 95.00697 * 4 2 1 35 35 H 1.07992 * 125.65632 * 359.97438 * 8 7 5 36 36 H 1.08001 * 125.65979 * 179.70906 * 11 9 8 37 37 H 1.07997 * 120.06622 * 0.02562 * 14 13 12 38 38 H 1.07997 * 119.93666 * 180.34008 * 15 14 13 39 39 H 1.08001 * 119.87057 * 179.70107 * 16 15 14 40 40 H 1.08004 * 119.93541 * 180.02562 * 17 16 15 41 41 H 1.08004 * 120.06734 * 180.02562 * 18 17 16 42 42 H 1.08998 * 112.94067 * 290.33351 * 19 2 1 43 43 H 1.09002 * 113.77199 * 336.35277 * 20 19 2 44 44 H 1.09000 * 113.76866 * 107.74939 * 20 19 2 45 45 H 0.97004 * 120.00422 * 179.97438 * 25 24 22 46 46 H 1.09004 * 113.76343 * 221.15169 * 30 21 20 47 47 H 1.08996 * 113.87131 * 89.76724 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8574 1.1619 2.4118 7 6 2.6370 -0.7120 3.5587 8 6 2.9995 -2.0254 3.6588 9 7 3.3903 -2.2698 4.9245 10 1 3.6961 -3.1302 5.2520 11 6 3.2914 -1.1419 5.6817 12 6 2.8356 -0.1311 4.8986 13 6 2.5828 1.2711 5.3094 14 6 3.1058 2.3244 4.5611 15 6 2.8617 3.6275 4.9444 16 6 2.1104 3.8891 6.0760 17 6 1.5940 2.8477 6.8260 18 6 1.8264 1.5409 6.4488 19 6 2.0400 -0.7213 -1.2492 20 6 3.4848 -0.3521 -1.6316 21 7 2.9978 -0.3177 -3.0268 22 6 3.5875 -0.4758 -4.2525 23 1 2.9790 -0.5091 -5.1442 24 6 4.9672 -0.5931 -4.3491 25 7 5.7006 -0.6529 -3.2578 26 14 5.7832 -0.6665 -6.0278 27 1 6.2265 0.6947 -6.4226 28 1 6.9588 -1.5718 -5.9676 29 1 4.8131 -1.1806 -7.0277 30 6 1.6213 -0.0472 -2.5684 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 2.2491 -1.6317 1.1526 35 1 2.9757 -2.7479 2.8565 36 1 3.5373 -1.0640 6.7305 37 1 3.6962 2.1212 3.6799 38 1 3.2618 4.4445 4.3623 39 1 1.9259 4.9104 6.3750 40 1 1.0078 3.0580 7.7084 41 1 1.4225 0.7285 7.0348 42 1 1.8528 -1.7948 -1.2262 43 1 3.8048 0.6190 -1.2539 44 1 4.2071 -1.1448 -1.4366 45 1 6.6648 -0.7352 -3.3252 46 1 0.8586 -0.5970 -3.1199 47 1 1.3908 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970879523.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:16 Heat of formation + Delta-G solvation = 64.537821 kcal Electronic energy + Delta-G solvation = -28582.125809 eV Core-core repulsion = 24731.156607 eV Total energy + Delta-G solvation = -3850.969201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.10810 -40.59429 -39.58719 -39.31708 -36.03588 -34.17042 -33.36135 -32.32984 -31.68439 -30.38301 -29.34529 -29.14466 -26.61408 -25.67062 -24.32385 -23.73564 -23.28653 -22.35806 -21.15299 -20.64996 -19.95039 -19.39145 -18.72492 -17.38758 -17.22300 -17.12735 -16.86678 -16.01158 -15.88899 -15.73855 -15.49069 -15.27150 -14.90878 -14.77594 -14.52961 -14.37731 -14.15427 -14.08415 -13.81093 -13.68636 -13.39333 -13.25695 -13.09055 -12.94857 -12.87918 -12.67804 -12.51166 -11.99249 -11.95624 -11.85242 -11.71690 -11.45985 -11.23246 -10.87994 -10.78143 -10.16116 -9.93066 -9.68592 -9.39303 -8.91026 -8.87681 -7.92068 -5.24627 0.35587 0.64258 0.90103 1.43991 1.46812 1.55304 1.56908 2.29755 2.46637 2.49818 2.67646 3.05358 3.28399 3.40329 3.76596 3.92695 4.00045 4.07440 4.18187 4.21656 4.26468 4.33463 4.36968 4.47939 4.54313 4.61737 4.70673 4.75284 4.75928 4.78789 4.86155 4.89616 5.01981 5.05086 5.18707 5.24003 5.25875 5.27862 5.35753 5.51751 5.53687 5.61591 5.70338 5.72176 5.74113 5.88739 5.92941 5.97183 6.23740 6.68717 6.82486 6.91254 7.51438 7.60368 8.57496 9.25544 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014499 B = 0.002500 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.753192 B =11197.098976 C =11479.490181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.164 3.836 3 H 0.052 0.948 4 N -0.711 5.711 5 C 0.578 3.422 6 O -0.581 6.581 7 C -0.253 4.253 8 C 0.068 3.932 9 N -0.527 5.527 10 H 0.441 0.559 11 C 0.015 3.985 12 C -0.121 4.121 13 C -0.020 4.020 14 C -0.095 4.095 15 C -0.141 4.141 16 C -0.130 4.130 17 C -0.127 4.127 18 C -0.118 4.118 19 C -0.106 4.106 20 C 0.173 3.827 21 N -0.644 5.644 22 C -0.235 4.235 23 H 0.086 0.914 24 C -0.069 4.069 25 N -0.953 5.953 26 Si 0.977 3.023 27 H -0.292 1.292 28 H -0.293 1.293 29 H -0.264 1.264 30 C 0.129 3.871 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.408 0.592 35 H 0.205 0.795 36 H 0.204 0.796 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.140 0.860 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.109 0.891 43 H -0.002 1.002 44 H 0.039 0.961 45 H 0.248 0.752 46 H 0.066 0.934 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 -4.657 24.334 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.058 3.942 3 H 0.070 0.930 4 N -0.362 5.362 5 C 0.368 3.632 6 O -0.462 6.462 7 C -0.263 4.263 8 C -0.069 4.069 9 N -0.122 5.122 10 H 0.282 0.718 11 C -0.115 4.115 12 C -0.127 4.127 13 C -0.021 4.021 14 C -0.113 4.113 15 C -0.159 4.159 16 C -0.148 4.148 17 C -0.145 4.145 18 C -0.135 4.135 19 C -0.126 4.126 20 C 0.048 3.952 21 N -0.371 5.371 22 C -0.363 4.363 23 H 0.103 0.897 24 C -0.262 4.262 25 N -0.602 5.602 26 Si 0.805 3.195 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.188 1.188 30 C 0.004 3.996 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.244 0.756 35 H 0.221 0.779 36 H 0.220 0.780 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.158 0.842 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.127 0.873 43 H 0.016 0.984 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.084 0.916 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.911 -4.017 24.189 26.090 hybrid contribution 1.263 -0.158 -1.322 1.835 sum -7.648 -4.176 22.867 24.471 Atomic orbital electron populations 1.22020 0.93656 1.02979 1.01834 1.20725 0.94785 0.95585 0.83098 0.92978 1.45775 1.67459 1.14249 1.08708 1.17830 0.76543 0.85937 0.82940 1.90753 1.52602 1.17247 1.85608 1.20439 1.16641 0.95366 0.93892 1.22268 0.99668 0.96079 0.88915 1.41432 1.50266 1.12419 1.08073 0.71824 1.22160 1.06304 0.84654 0.98366 1.19320 1.08115 0.92868 0.92426 1.18262 0.97750 0.90891 0.95215 1.21073 0.99316 0.93210 0.97717 1.21243 1.00265 0.96285 0.98078 1.21419 0.97917 1.00439 0.95032 1.21364 1.00239 0.92222 1.00695 1.21409 0.98248 0.97760 0.96132 1.23437 0.96052 1.00611 0.92507 1.22077 0.93943 0.96148 0.83077 1.46438 1.06049 1.82652 1.01952 1.19460 0.90405 1.41654 0.84828 0.89675 1.25685 0.96669 1.03044 1.00820 1.70030 1.04514 1.57613 1.27993 0.85074 0.78001 0.76992 0.79396 1.21891 1.21940 1.18815 1.22683 0.87747 0.97384 0.91826 0.90594 0.93732 0.90995 0.75571 0.77865 0.77953 0.89289 0.86186 0.84175 0.83321 0.84083 0.87337 0.98368 0.94208 0.94346 0.91558 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.31 71.98 0.67 -3.26 16 2 C 0.16 5.26 2.38 44.99 0.11 5.37 16 3 H 0.05 2.06 7.41 -2.39 -0.02 2.05 16 4 N -0.71 -20.23 5.07 -446.05 -2.26 -22.49 16 5 C 0.58 18.89 7.77 86.58 0.67 19.57 16 6 O -0.58 -23.70 13.73 -4.16 -0.06 -23.76 16 7 C -0.25 -6.60 6.29 -18.91 -0.12 -6.72 16 8 C 0.07 1.09 11.38 83.87 0.95 2.05 16 9 N -0.53 -5.63 5.88 -193.90 -1.14 -6.77 16 10 H 0.44 1.03 8.96 -92.70 -0.83 0.20 16 11 C 0.01 0.22 11.79 83.43 0.98 1.21 16 12 C -0.12 -2.99 5.79 -18.77 -0.11 -3.10 16 13 C -0.02 -0.57 5.40 -20.05 -0.11 -0.68 16 14 C -0.09 -3.03 7.94 22.49 0.18 -2.85 16 15 C -0.14 -3.92 10.03 22.24 0.22 -3.70 16 16 C -0.13 -2.90 10.04 22.32 0.22 -2.68 16 17 C -0.13 -2.54 10.03 22.24 0.22 -2.32 16 18 C -0.12 -2.57 9.72 22.49 0.22 -2.35 16 19 C -0.11 -3.78 3.47 -10.13 -0.04 -3.82 16 20 C 0.17 8.45 6.99 86.44 0.60 9.05 16 21 N -0.64 -33.80 3.70 -716.11 -2.65 -36.45 16 22 C -0.24 -13.46 10.70 84.03 0.90 -12.56 16 23 H 0.09 4.63 7.83 -2.91 -0.02 4.60 16 24 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 25 N -0.95 -58.81 11.51 21.65 0.25 -58.56 16 26 Si 0.98 46.47 29.56 68.60 2.03 48.50 16 27 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 29 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 30 C 0.13 5.15 7.64 86.48 0.66 5.81 16 31 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.83 7.52 -2.39 -0.02 1.81 16 34 H 0.41 8.99 7.54 -92.71 -0.70 8.30 16 35 H 0.20 1.88 7.44 -2.91 -0.02 1.86 16 36 H 0.20 1.62 8.06 -2.91 -0.02 1.59 16 37 H 0.09 3.31 7.48 -2.91 -0.02 3.29 16 38 H 0.12 3.09 8.06 -2.91 -0.02 3.06 16 39 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 40 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 43 H 0.00 -0.08 7.99 -2.39 -0.02 -0.10 16 44 H 0.04 2.13 7.37 -2.39 -0.02 2.11 16 45 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 46 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 47 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 Total: -1.00 -84.19 391.75 2.35 -81.83 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.53 Total: 22.24 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 6.72 Total: -4.54 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -5.80 Total: -124.27 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.06 Total: -23.76 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -84.19 2.35 -81.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970879523.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.372 kcal (2) G-P(sol) polarization free energy of solvation -84.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds