Wall clock time and date at job start Sat Apr 11 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.87443 * 2 1 4 4 C 1.54325 * 109.88128 * 121.01569 * 2 1 3 5 5 H 1.08994 * 110.87038 * 215.65805 * 4 2 1 6 6 N 1.46497 * 110.72131 * 338.86112 * 4 2 1 7 7 C 1.36935 * 120.00023 * 199.98015 * 6 4 2 8 8 H 1.07998 * 120.00224 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99817 * 180.02562 * 7 6 4 10 10 N 1.31627 * 119.99924 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00363 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46995 * 90.00180 * 11 9 7 13 13 H 1.48499 * 109.47530 * 210.00067 * 11 9 7 14 14 H 1.48494 * 109.47112 * 330.00526 * 11 9 7 15 15 C 1.55154 * 102.94303 * 97.22539 * 4 2 1 16 16 C 1.54908 * 101.58289 * 35.49976 * 15 4 2 17 17 N 1.47290 * 109.85675 * 238.85037 * 2 1 3 18 18 C 1.34774 * 125.79121 * 59.50355 * 17 2 1 19 19 O 1.21280 * 120.00501 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99753 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47230 * 179.97438 * 20 18 17 22 22 C 1.36213 * 120.66513 * 264.99577 * 21 20 18 23 23 N 1.32582 * 121.87274 * 179.97438 * 22 21 20 24 24 C 1.31269 * 122.78098 * 0.02634 * 23 22 21 25 25 C 1.40391 * 119.88038 * 359.97438 * 24 23 22 26 26 C 1.40382 * 122.08668 * 179.97438 * 25 24 23 27 27 C 1.36172 * 119.51266 * 179.18420 * 26 25 24 28 28 C 1.39375 * 121.09148 * 0.82128 * 27 26 25 29 29 C 1.36210 * 121.02743 * 359.43403 * 28 27 26 30 30 C 1.40249 * 119.47416 * 0.02562 * 29 28 27 31 31 H 1.09005 * 109.47227 * 298.98333 * 1 2 3 32 32 H 1.09002 * 109.47214 * 58.98361 * 1 2 3 33 33 H 1.09004 * 109.46879 * 178.98623 * 1 2 3 34 34 H 0.97001 * 120.00178 * 19.97534 * 6 4 2 35 35 H 0.97000 * 120.00215 * 179.97438 * 10 9 7 36 36 H 1.09008 * 111.00345 * 277.42446 * 15 4 2 37 37 H 1.09000 * 111.03743 * 153.59413 * 15 4 2 38 38 H 1.09002 * 110.36632 * 81.83114 * 16 15 4 39 39 H 1.08995 * 110.36781 * 204.04351 * 16 15 4 40 40 H 1.09001 * 109.47204 * 299.99785 * 20 18 17 41 41 H 1.09000 * 109.47543 * 59.99762 * 20 18 17 42 42 H 1.07998 * 119.06396 * 359.97438 * 22 21 20 43 43 H 1.07999 * 120.06003 * 180.02562 * 24 23 22 44 44 H 1.08005 * 120.23875 * 0.02562 * 26 25 24 45 45 H 1.08006 * 119.45277 * 180.27550 * 27 26 25 46 46 H 1.08001 * 119.48592 * 179.45676 * 28 27 26 47 47 H 1.07994 * 120.26271 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9650 -0.2822 1.6215 6 7 1.0293 -0.7994 2.2886 7 6 1.3878 -1.0366 3.5888 8 1 2.4265 -1.1860 3.8439 9 6 0.4159 -1.0860 4.5787 10 7 0.7604 -1.3145 5.8284 11 14 -1.3808 -0.8283 4.1375 12 1 -2.0024 -2.1365 3.8090 13 1 -2.0911 -0.2183 5.2901 14 1 -1.4774 0.0744 2.9624 15 6 2.3519 -2.1685 0.6955 16 6 2.8568 -1.8509 -0.7341 17 7 2.0303 -0.7166 -1.1856 18 6 1.7762 -0.3914 -2.4686 19 8 1.0797 0.5679 -2.7246 20 6 2.3576 -1.2198 -3.5852 21 6 1.9252 -0.6495 -4.9114 22 6 0.8321 -1.1435 -5.5567 23 7 0.4301 -0.6596 -6.7238 24 6 1.0498 0.3211 -7.3381 25 6 2.1887 0.9013 -6.7574 26 6 2.8872 1.9515 -7.3737 27 6 3.9761 2.4867 -6.7556 28 6 4.4196 1.9979 -5.5280 29 6 3.7703 0.9766 -4.9030 30 6 2.6382 0.4079 -5.5045 31 1 -0.3634 0.4980 0.8990 32 1 -0.3634 0.5295 -0.8807 33 1 -0.3633 -1.0276 -0.0182 34 1 0.0963 -0.6655 2.0595 35 1 0.0814 -1.3487 6.5202 36 1 1.4451 -2.7728 0.6643 37 1 3.1267 -2.6607 1.2832 38 1 3.9092 -1.5678 -0.7106 39 1 2.7106 -2.7106 -1.3879 40 1 3.4456 -1.2047 -3.5202 41 1 2.0027 -2.2467 -3.4986 42 1 0.2770 -1.9522 -5.1049 43 1 0.6837 0.6816 -8.2880 44 1 2.5552 2.3413 -8.3247 45 1 4.5101 3.2977 -7.2285 46 1 5.2915 2.4359 -5.0650 47 1 4.1245 0.6076 -3.9518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986383685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:44 Heat of formation + Delta-G solvation = 45.641653 kcal Electronic energy + Delta-G solvation = -29019.605790 eV Core-core repulsion = 25167.817190 eV Total energy + Delta-G solvation = -3851.788601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.27515 -40.02500 -37.80919 -37.48513 -34.42789 -34.31218 -31.90782 -31.44972 -30.89792 -30.60463 -29.60297 -27.80338 -25.52982 -24.30028 -23.81938 -23.26682 -22.69641 -21.60693 -19.67124 -18.77433 -18.23531 -17.99796 -17.82840 -17.04454 -16.63245 -15.91037 -15.46470 -15.16526 -14.76843 -14.63328 -14.42004 -14.19334 -14.05092 -13.83426 -13.71389 -13.29084 -13.08404 -12.87587 -12.70545 -12.37715 -12.33540 -12.18767 -12.07762 -11.91161 -11.72353 -11.44501 -11.32943 -11.20893 -10.93353 -10.59985 -10.38633 -10.33598 -10.10778 -9.75540 -9.68546 -9.55931 -9.31608 -9.01593 -8.55057 -8.26982 -7.37389 -5.85280 -3.22245 0.09389 0.67487 1.64211 2.64376 2.78981 3.03480 3.32038 3.35097 3.41132 3.83712 4.07207 4.27551 4.42843 4.46727 4.51718 4.53073 4.60923 4.71593 4.82663 4.88518 4.91233 5.01959 5.11539 5.12797 5.22624 5.32806 5.35351 5.46800 5.48494 5.49851 5.60204 5.62399 5.74906 5.79599 5.81030 5.85940 5.98395 6.10190 6.12702 6.18529 6.33913 6.36923 6.45511 6.52001 6.54264 6.56477 6.79605 7.61393 7.75596 7.89672 8.21015 8.33537 9.10828 9.83165 10.01759 11.32542 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021645 B = 0.002500 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.265365 B =11195.198189 C =11562.919793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.128 3.872 3 H 0.074 0.926 4 C 0.179 3.821 5 H 0.072 0.928 6 N -0.742 5.742 7 C -0.249 4.249 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.879 3.121 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.276 1.276 15 C -0.152 4.152 16 C 0.095 3.905 17 N -0.610 5.610 18 C 0.528 3.472 19 O -0.533 6.533 20 C -0.096 4.096 21 C -0.095 4.095 22 C 0.088 3.912 23 N -0.484 5.484 24 C 0.141 3.859 25 C -0.112 4.112 26 C -0.088 4.088 27 C -0.121 4.121 28 C -0.098 4.098 29 C -0.107 4.107 30 C -0.007 4.007 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.368 0.632 35 H 0.261 0.739 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.151 0.849 43 H 0.162 0.838 44 H 0.132 0.868 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.196 2.125 -27.320 28.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.024 3.976 3 H 0.092 0.908 4 C 0.068 3.932 5 H 0.090 0.910 6 N -0.386 5.386 7 C -0.378 4.378 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.577 5.577 11 Si 0.709 3.291 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.193 4.193 16 C -0.028 4.028 17 N -0.345 5.345 18 C 0.316 3.684 19 O -0.409 6.409 20 C -0.137 4.137 21 C -0.097 4.097 22 C -0.055 4.055 23 N -0.191 5.191 24 C -0.031 4.031 25 C -0.114 4.114 26 C -0.108 4.108 27 C -0.139 4.139 28 C -0.118 4.118 29 C -0.124 4.124 30 C -0.012 4.012 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.204 0.796 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.168 0.832 43 H 0.179 0.821 44 H 0.150 0.850 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.140 2.159 -27.545 28.537 hybrid contribution -0.529 0.441 0.394 0.794 sum 6.611 2.600 -27.151 28.065 Atomic orbital electron populations 1.22084 0.95165 1.02271 1.02698 1.21860 0.94968 0.96055 0.84672 0.90760 1.21141 0.92986 0.92360 0.86694 0.91041 1.42985 1.04316 1.86901 1.04429 1.19045 0.95349 1.41507 0.81928 0.89034 1.24653 0.97384 1.01525 0.95174 1.69692 1.32742 1.55652 0.99627 0.86665 0.86850 0.78131 0.77490 1.20936 1.21531 1.20195 1.23511 1.01982 1.00901 0.92955 1.22430 0.94676 0.88411 0.97280 1.48667 1.50418 1.30610 1.04805 1.19982 0.81181 0.85200 0.82055 1.90722 1.38386 1.28794 1.83022 1.20580 1.02809 1.00385 0.89886 1.20020 0.97082 0.96671 0.95928 1.22016 0.93419 0.99088 0.91016 1.67419 1.30792 1.11413 1.09488 1.23166 0.90316 0.91004 0.98579 1.19007 0.98105 0.98721 0.95554 1.20970 0.95192 0.94915 0.99697 1.20923 0.97195 1.00171 0.95617 1.20990 0.99620 0.96031 0.95134 1.20962 0.94741 0.97037 0.99709 1.17954 0.95090 0.94662 0.93509 0.90881 0.91665 0.92539 0.79569 0.92926 0.90699 0.90035 0.91365 0.91151 0.87770 0.87484 0.83187 0.82071 0.84976 0.85602 0.85555 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 7.95 37.16 0.30 -2.56 16 2 C 0.13 2.09 3.49 -66.80 -0.23 1.85 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 4 C 0.18 3.18 3.46 -66.10 -0.23 2.95 16 5 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 6 N -0.74 -16.59 4.82 -51.66 -0.25 -16.84 16 7 C -0.25 -6.67 10.46 -15.06 -0.16 -6.83 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 9 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 10 N -0.93 -28.43 13.97 55.49 0.78 -27.65 16 11 Si 0.88 21.66 27.74 -169.99 -4.71 16.94 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.28 -6.42 6.45 56.52 0.36 -6.05 16 15 C -0.15 -2.24 6.77 -24.58 -0.17 -2.41 16 16 C 0.10 1.06 6.68 -2.53 -0.02 1.04 16 17 N -0.61 -8.33 3.09 -162.82 -0.50 -8.83 16 18 C 0.53 7.29 7.63 -10.99 -0.08 7.21 16 19 O -0.53 -9.45 14.97 5.56 0.08 -9.37 16 20 C -0.10 -0.95 4.30 -29.04 -0.12 -1.07 16 21 C -0.09 -1.10 4.40 -104.44 -0.46 -1.55 16 22 C 0.09 1.05 10.72 -17.96 -0.19 0.86 16 23 N -0.48 -5.97 10.30 -13.16 -0.14 -6.11 16 24 C 0.14 1.45 11.05 -16.98 -0.19 1.26 16 25 C -0.11 -1.18 5.74 -106.86 -0.61 -1.79 16 26 C -0.09 -0.71 9.81 -39.52 -0.39 -1.10 16 27 C -0.12 -0.93 9.94 -39.90 -0.40 -1.32 16 28 C -0.10 -0.84 9.95 -39.89 -0.40 -1.23 16 29 C -0.11 -1.09 9.33 -39.56 -0.37 -1.46 16 30 C -0.01 -0.08 5.75 -106.81 -0.61 -0.70 16 31 H 0.07 1.36 6.60 -51.93 -0.34 1.02 16 32 H 0.06 1.16 6.78 -51.93 -0.35 0.81 16 33 H 0.06 0.97 8.08 -51.93 -0.42 0.56 16 34 H 0.37 8.23 2.79 -40.82 -0.11 8.11 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.62 7.47 -51.93 -0.39 0.23 16 40 H 0.10 0.80 6.85 -51.93 -0.36 0.45 16 41 H 0.11 0.83 7.76 -51.93 -0.40 0.42 16 42 H 0.15 1.52 8.05 -52.49 -0.42 1.10 16 43 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 45 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 46 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.13 1.17 6.65 -52.49 -0.35 0.82 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -34.36 378.83 -10.01 -44.37 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.55 Total: 8.47 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -4.43 Total: -6.69 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.11 Total: -59.43 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.36 -10.01 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986383685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.012 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds