Wall clock time and date at job start Sat Apr 11 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.87443 * 2 1 4 4 C 1.54325 * 109.88128 * 121.01569 * 2 1 3 5 5 H 1.08994 * 110.87038 * 215.65805 * 4 2 1 6 6 N 1.46497 * 110.72131 * 338.86112 * 4 2 1 7 7 C 1.36935 * 120.00023 * 199.98015 * 6 4 2 8 8 H 1.07998 * 120.00224 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99817 * 180.02562 * 7 6 4 10 10 N 1.31627 * 119.99924 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00363 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46995 * 90.00180 * 11 9 7 13 13 H 1.48499 * 109.47530 * 210.00067 * 11 9 7 14 14 H 1.48494 * 109.47112 * 330.00526 * 11 9 7 15 15 C 1.55154 * 102.94303 * 97.22539 * 4 2 1 16 16 C 1.54908 * 101.58289 * 35.49976 * 15 4 2 17 17 N 1.47290 * 109.85675 * 238.85037 * 2 1 3 18 18 C 1.34774 * 125.79121 * 59.50355 * 17 2 1 19 19 O 1.21280 * 120.00501 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99753 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47230 * 179.97438 * 20 18 17 22 22 C 1.36213 * 120.66513 * 264.99577 * 21 20 18 23 23 N 1.32582 * 121.87274 * 179.97438 * 22 21 20 24 24 C 1.31269 * 122.78098 * 0.02634 * 23 22 21 25 25 C 1.40391 * 119.88038 * 359.97438 * 24 23 22 26 26 C 1.40382 * 122.08668 * 179.97438 * 25 24 23 27 27 C 1.36172 * 119.51266 * 179.18420 * 26 25 24 28 28 C 1.39375 * 121.09148 * 0.82128 * 27 26 25 29 29 C 1.36210 * 121.02743 * 359.43403 * 28 27 26 30 30 C 1.40249 * 119.47416 * 0.02562 * 29 28 27 31 31 H 1.09005 * 109.47227 * 298.98333 * 1 2 3 32 32 H 1.09002 * 109.47214 * 58.98361 * 1 2 3 33 33 H 1.09004 * 109.46879 * 178.98623 * 1 2 3 34 34 H 0.97001 * 120.00178 * 19.97534 * 6 4 2 35 35 H 0.97000 * 120.00215 * 179.97438 * 10 9 7 36 36 H 1.09008 * 111.00345 * 277.42446 * 15 4 2 37 37 H 1.09000 * 111.03743 * 153.59413 * 15 4 2 38 38 H 1.09002 * 110.36632 * 81.83114 * 16 15 4 39 39 H 1.08995 * 110.36781 * 204.04351 * 16 15 4 40 40 H 1.09001 * 109.47204 * 299.99785 * 20 18 17 41 41 H 1.09000 * 109.47543 * 59.99762 * 20 18 17 42 42 H 1.07998 * 119.06396 * 359.97438 * 22 21 20 43 43 H 1.07999 * 120.06003 * 180.02562 * 24 23 22 44 44 H 1.08005 * 120.23875 * 0.02562 * 26 25 24 45 45 H 1.08006 * 119.45277 * 180.27550 * 27 26 25 46 46 H 1.08001 * 119.48592 * 179.45676 * 28 27 26 47 47 H 1.07994 * 120.26271 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9650 -0.2822 1.6215 6 7 1.0293 -0.7994 2.2886 7 6 1.3878 -1.0366 3.5888 8 1 2.4265 -1.1860 3.8439 9 6 0.4159 -1.0860 4.5787 10 7 0.7604 -1.3145 5.8284 11 14 -1.3808 -0.8283 4.1375 12 1 -2.0024 -2.1365 3.8090 13 1 -2.0911 -0.2183 5.2901 14 1 -1.4774 0.0744 2.9624 15 6 2.3519 -2.1685 0.6955 16 6 2.8568 -1.8509 -0.7341 17 7 2.0303 -0.7166 -1.1856 18 6 1.7762 -0.3914 -2.4686 19 8 1.0797 0.5679 -2.7246 20 6 2.3576 -1.2198 -3.5852 21 6 1.9252 -0.6495 -4.9114 22 6 0.8321 -1.1435 -5.5567 23 7 0.4301 -0.6596 -6.7238 24 6 1.0498 0.3211 -7.3381 25 6 2.1887 0.9013 -6.7574 26 6 2.8872 1.9515 -7.3737 27 6 3.9761 2.4867 -6.7556 28 6 4.4196 1.9979 -5.5280 29 6 3.7703 0.9766 -4.9030 30 6 2.6382 0.4079 -5.5045 31 1 -0.3634 0.4980 0.8990 32 1 -0.3634 0.5295 -0.8807 33 1 -0.3633 -1.0276 -0.0182 34 1 0.0963 -0.6655 2.0595 35 1 0.0814 -1.3487 6.5202 36 1 1.4451 -2.7728 0.6643 37 1 3.1267 -2.6607 1.2832 38 1 3.9092 -1.5678 -0.7106 39 1 2.7106 -2.7106 -1.3879 40 1 3.4456 -1.2047 -3.5202 41 1 2.0027 -2.2467 -3.4986 42 1 0.2770 -1.9522 -5.1049 43 1 0.6837 0.6816 -8.2880 44 1 2.5552 2.3413 -8.3247 45 1 4.5101 3.2977 -7.2285 46 1 5.2915 2.4359 -5.0650 47 1 4.1245 0.6076 -3.9518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986383685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:42 Heat of formation + Delta-G solvation = 24.594851 kcal Electronic energy + Delta-G solvation = -29020.518448 eV Core-core repulsion = 25167.817190 eV Total energy + Delta-G solvation = -3852.701259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.04215 -41.13226 -39.00153 -38.22864 -36.04150 -35.17285 -33.67908 -32.23314 -32.10499 -31.56197 -30.87118 -28.72358 -26.94879 -25.27463 -24.78594 -24.48731 -23.87486 -22.44481 -20.96632 -20.07473 -19.80555 -18.90650 -18.53784 -18.16539 -17.41186 -17.11482 -16.59115 -16.40861 -15.96038 -15.73025 -15.51064 -15.31859 -15.05007 -14.87324 -14.65552 -14.55930 -14.26757 -14.02559 -13.71273 -13.55425 -13.45438 -13.23061 -13.08562 -13.06395 -12.93709 -12.81041 -12.69985 -12.59450 -12.24931 -11.95592 -11.92972 -11.73060 -11.56059 -11.16391 -10.98098 -10.73442 -10.45926 -10.01401 -9.68834 -9.32600 -8.97669 -8.03469 -5.36547 -0.60182 -0.04136 0.93738 1.35498 1.36177 1.43141 1.60982 1.90511 2.16264 2.45467 3.09301 3.26261 3.37030 3.51316 3.55146 3.58246 3.75468 3.79646 3.82000 3.91126 3.96988 4.07390 4.12091 4.22523 4.32099 4.33491 4.35363 4.39649 4.48236 4.56014 4.57258 4.65190 4.79634 4.81250 4.81942 4.94524 5.00953 5.10416 5.11612 5.14998 5.24026 5.29619 5.46643 5.47843 5.51374 5.67444 5.77409 5.94273 6.20772 6.55811 6.99030 7.05706 7.14921 7.81598 7.99142 9.17593 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021645 B = 0.002500 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.265365 B =11195.198189 C =11562.919793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.135 3.865 3 H 0.066 0.934 4 C 0.169 3.831 5 H 0.068 0.932 6 N -0.748 5.748 7 C -0.224 4.224 8 H 0.067 0.933 9 C -0.058 4.058 10 N -0.980 5.980 11 Si 0.938 3.062 12 H -0.278 1.278 13 H -0.296 1.296 14 H -0.257 1.257 15 C -0.146 4.146 16 C 0.102 3.898 17 N -0.609 5.609 18 C 0.528 3.472 19 O -0.577 6.577 20 C -0.086 4.086 21 C -0.108 4.108 22 C 0.068 3.932 23 N -0.514 5.514 24 C 0.138 3.862 25 C -0.132 4.132 26 C -0.088 4.088 27 C -0.125 4.125 28 C -0.098 4.098 29 C -0.130 4.130 30 C -0.030 4.030 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.368 0.632 35 H 0.257 0.743 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.158 0.842 43 H 0.191 0.809 44 H 0.162 0.838 45 H 0.156 0.844 46 H 0.148 0.852 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.323 2.242 -30.389 31.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.030 3.970 3 H 0.084 0.916 4 C 0.060 3.940 5 H 0.086 0.914 6 N -0.393 5.393 7 C -0.355 4.355 8 H 0.085 0.915 9 C -0.250 4.250 10 N -0.630 5.630 11 Si 0.766 3.234 12 H -0.204 1.204 13 H -0.223 1.223 14 H -0.182 1.182 15 C -0.187 4.187 16 C -0.019 4.019 17 N -0.343 5.343 18 C 0.318 3.682 19 O -0.457 6.457 20 C -0.125 4.125 21 C -0.110 4.110 22 C -0.075 4.075 23 N -0.222 5.222 24 C -0.033 4.033 25 C -0.134 4.134 26 C -0.108 4.108 27 C -0.142 4.142 28 C -0.117 4.117 29 C -0.147 4.147 30 C -0.035 4.035 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.205 0.795 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.175 0.825 43 H 0.208 0.792 44 H 0.180 0.820 45 H 0.173 0.827 46 H 0.166 0.834 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.304 2.256 -30.680 31.864 hybrid contribution -0.739 0.501 1.244 1.531 sum 7.564 2.757 -29.436 30.518 Atomic orbital electron populations 1.21974 0.96027 1.01886 1.01523 1.21571 0.94176 0.95870 0.85371 0.91559 1.21356 0.91667 0.94803 0.86196 0.91377 1.43002 1.05429 1.87034 1.03845 1.19033 0.94096 1.38606 0.83726 0.91493 1.25349 1.01591 1.02907 0.95150 1.69849 1.33875 1.58497 1.00801 0.85681 0.81813 0.78420 0.77452 1.20420 1.22323 1.18231 1.23343 1.01852 0.98137 0.95347 1.22584 0.95345 0.88771 0.95234 1.48679 1.50545 1.30909 1.04128 1.20658 0.80262 0.84825 0.82418 1.90706 1.40423 1.30921 1.83603 1.20609 1.04121 1.00540 0.87277 1.20177 0.97178 0.97065 0.96568 1.22243 0.93970 0.99806 0.91435 1.67423 1.31855 1.12704 1.10179 1.23700 0.90038 0.90201 0.99341 1.19328 0.98648 0.99702 0.95738 1.21356 0.94842 0.93873 1.00695 1.21330 0.97060 1.00574 0.95281 1.21374 0.99824 0.95150 0.95352 1.21122 0.95072 0.98181 1.00371 1.18283 0.95813 0.95113 0.94301 0.92437 0.92292 0.92486 0.79493 0.93389 0.91805 0.89641 0.88686 0.87501 0.85144 0.84875 0.82485 0.79186 0.82001 0.82668 0.83432 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.35 7.95 71.98 0.57 -4.78 16 2 C 0.13 4.26 3.49 45.29 0.16 4.42 16 3 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.17 5.84 3.46 46.18 0.16 6.00 16 5 H 0.07 2.40 8.12 -2.39 -0.02 2.39 16 6 N -0.75 -33.21 4.82 -317.35 -1.53 -34.74 16 7 C -0.22 -12.14 10.46 84.03 0.88 -11.26 16 8 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 9 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 10 N -0.98 -61.52 13.97 21.65 0.30 -61.22 16 11 Si 0.94 45.20 27.74 68.60 1.90 47.11 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 14 H -0.26 -11.43 6.45 99.48 0.64 -10.79 16 15 C -0.15 -3.99 6.77 31.98 0.22 -3.77 16 16 C 0.10 1.90 6.68 86.85 0.58 2.48 16 17 N -0.61 -15.19 3.09 -787.43 -2.43 -17.62 16 18 C 0.53 13.60 7.63 87.66 0.67 14.27 16 19 O -0.58 -20.18 14.97 -3.03 -0.05 -20.23 16 20 C -0.09 -1.47 4.30 29.10 0.13 -1.34 16 21 C -0.11 -2.36 4.40 -19.75 -0.09 -2.45 16 22 C 0.07 1.59 10.72 84.11 0.90 2.49 16 23 N -0.51 -12.46 10.30 -195.54 -2.01 -14.47 16 24 C 0.14 2.69 11.05 85.30 0.94 3.63 16 25 C -0.13 -2.60 5.74 -21.31 -0.12 -2.72 16 26 C -0.09 -1.19 9.81 22.31 0.22 -0.97 16 27 C -0.12 -1.53 9.94 22.06 0.22 -1.31 16 28 C -0.10 -1.42 9.95 22.07 0.22 -1.21 16 29 C -0.13 -2.42 9.33 22.29 0.21 -2.21 16 30 C -0.03 -0.66 5.75 -21.28 -0.12 -0.78 16 31 H 0.06 2.12 6.60 -2.38 -0.02 2.11 16 32 H 0.06 2.09 6.78 -2.39 -0.02 2.08 16 33 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 34 H 0.37 16.23 2.79 -92.71 -0.26 15.97 16 35 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.11 1.31 7.47 -2.39 -0.02 1.29 16 40 H 0.13 1.53 6.85 -2.39 -0.02 1.52 16 41 H 0.13 1.56 7.76 -2.39 -0.02 1.55 16 42 H 0.16 3.13 8.05 -2.91 -0.02 3.10 16 43 H 0.19 2.22 8.06 -2.91 -0.02 2.19 16 44 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 45 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 46 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 47 H 0.13 2.17 6.65 -2.91 -0.02 2.15 16 Total: -1.00 -77.80 378.83 3.06 -74.74 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.67 Total: 28.85 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 6.21 Total: -2.42 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -5.67 Total: -128.06 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.23 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.11 kcal Total: -77.80 3.06 -74.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986383685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.338 kcal (2) G-P(sol) polarization free energy of solvation -77.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds