Wall clock time and date at job start Sat Apr 11 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.87275 * 2 1 4 4 C 1.54321 * 109.88193 * 121.02002 * 2 1 3 5 5 H 1.09004 * 110.71712 * 259.96857 * 4 2 1 6 6 N 1.46497 * 110.72191 * 23.24509 * 4 2 1 7 7 C 1.36943 * 119.99606 * 205.00169 * 6 4 2 8 8 H 1.07995 * 120.00487 * 0.02562 * 7 6 4 9 9 C 1.38821 * 119.99507 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99890 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99550 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47415 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47000 * 120.00139 * 11 9 7 14 14 H 1.48501 * 109.46765 * 239.99514 * 11 9 7 15 15 C 1.55157 * 102.94161 * 141.60956 * 4 2 1 16 16 C 1.54908 * 101.58223 * 324.49347 * 15 4 2 17 17 N 1.47021 * 109.87884 * 238.82674 * 2 1 3 18 18 C 1.34777 * 125.65069 * 61.59396 * 17 2 1 19 19 O 1.21278 * 119.99944 * 359.97438 * 18 17 2 20 20 C 1.50697 * 120.00010 * 179.97438 * 18 17 2 21 21 C 1.50704 * 109.46965 * 180.02562 * 20 18 17 22 22 C 1.39356 * 119.46262 * 269.72744 * 21 20 18 23 23 C 1.36139 * 120.86355 * 179.73396 * 22 21 20 24 24 C 1.40421 * 119.61721 * 0.55652 * 23 22 21 25 25 C 1.40773 * 121.38005 * 179.72590 * 24 23 22 26 26 C 1.36576 * 118.15266 * 179.97438 * 25 24 23 27 27 C 1.39331 * 119.93571 * 359.97438 * 26 25 24 28 28 N 1.31090 * 121.74665 * 359.97438 * 27 26 25 29 29 C 1.33679 * 121.32421 * 0.04897 * 28 27 26 30 30 C 1.36076 * 119.46688 * 90.00060 * 21 20 18 31 31 H 1.09001 * 109.47002 * 298.97991 * 1 2 3 32 32 H 1.08993 * 109.46955 * 58.98429 * 1 2 3 33 33 H 1.09000 * 109.47050 * 178.98257 * 1 2 3 34 34 H 0.96998 * 120.00217 * 25.00102 * 6 4 2 35 35 H 0.97000 * 119.99370 * 179.97438 * 10 9 7 36 36 H 1.08996 * 111.00404 * 82.57307 * 15 4 2 37 37 H 1.09003 * 111.00435 * 206.38408 * 15 4 2 38 38 H 1.09005 * 110.36727 * 155.84913 * 16 15 4 39 39 H 1.08997 * 110.36976 * 278.06472 * 16 15 4 40 40 H 1.09001 * 109.47226 * 299.99805 * 20 18 17 41 41 H 1.08998 * 109.47229 * 59.99946 * 20 18 17 42 42 H 1.08004 * 119.56625 * 359.97438 * 22 21 20 43 43 H 1.08000 * 120.18860 * 180.23052 * 23 22 21 44 44 H 1.07998 * 120.91898 * 359.95620 * 25 24 23 45 45 H 1.07997 * 120.03059 * 179.97438 * 26 25 24 46 46 H 1.07998 * 119.12792 * 180.02562 * 27 26 25 47 47 H 1.08002 * 120.12595 * 0.02562 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 2.3530 -0.0432 2.0201 6 7 1.0472 -1.6832 1.7497 7 6 1.0608 -2.0575 3.0669 8 1 1.8140 -1.6631 3.7327 9 6 0.1063 -2.9442 3.5462 10 7 -0.8120 -3.4246 2.7348 11 14 0.1252 -3.4555 5.3427 12 1 1.2503 -2.7801 6.0378 13 1 -1.1575 -3.0659 5.9818 14 1 0.2980 -4.9274 5.4366 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8805 -0.7343 17 7 2.0300 -0.7157 -1.1830 18 6 1.8071 -0.3655 -2.4652 19 8 1.1424 0.6166 -2.7189 20 6 2.3839 -1.1945 -3.5838 21 6 1.9915 -0.5929 -4.9087 22 6 0.8122 -1.0053 -5.5263 23 6 0.4276 -0.4770 -6.7206 24 6 1.2348 0.4877 -7.3448 25 6 0.8757 1.0542 -8.5825 26 6 1.7091 1.9874 -9.1300 27 6 2.8768 2.3532 -8.4636 28 7 3.2075 1.8243 -7.3107 29 6 2.4363 0.9055 -6.7208 30 6 2.7971 0.3400 -5.4852 31 1 -0.3633 0.4979 0.8990 32 1 -0.3633 0.5295 -0.8807 33 1 -0.3633 -1.0275 -0.0182 34 1 0.3705 -2.0372 1.1518 35 1 -1.4787 -4.0445 3.0697 36 1 4.1654 -0.8680 0.6615 37 1 3.4856 -2.4090 1.2832 38 1 3.6716 -2.0358 -1.3896 39 1 2.1902 -2.7736 -0.7094 40 1 3.4706 -1.2113 -3.5005 41 1 1.9987 -2.2120 -3.5179 42 1 0.1934 -1.7510 -5.0493 43 1 -0.4903 -0.8019 -7.1877 44 1 -0.0334 0.7589 -9.0851 45 1 1.4634 2.4413 -10.0787 46 1 3.5262 3.0927 -8.9083 47 1 3.7101 0.6449 -4.9954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986421319.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:16 Heat of formation + Delta-G solvation = 38.794059 kcal Electronic energy + Delta-G solvation = -28549.508287 eV Core-core repulsion = 24697.422752 eV Total energy + Delta-G solvation = -3852.085535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.03856 -39.96047 -38.00281 -36.92649 -34.00290 -33.83718 -32.37366 -31.43649 -30.77404 -30.29467 -29.10831 -27.60818 -25.21816 -24.30590 -23.67068 -23.26625 -22.36224 -21.98410 -19.79069 -18.54656 -18.00373 -17.54915 -17.18041 -17.01224 -16.64908 -16.02301 -15.14822 -14.71476 -14.65365 -14.53045 -14.35059 -14.29903 -13.88121 -13.75111 -13.26125 -13.24524 -13.08999 -12.82654 -12.64878 -12.26336 -12.14270 -11.84638 -11.71483 -11.53858 -11.51766 -11.29395 -11.01413 -10.94048 -10.78714 -10.72415 -10.64257 -10.23488 -10.04441 -9.69736 -9.65412 -9.52387 -8.99139 -8.82874 -8.39417 -8.30231 -7.05499 -5.84802 -3.14125 0.22363 0.62659 1.83109 2.68725 2.86145 3.31486 3.38510 3.44803 3.46742 3.95277 4.05608 4.37075 4.46791 4.52270 4.60542 4.66222 4.75618 4.82248 4.91653 5.06653 5.10425 5.20838 5.31224 5.31868 5.40494 5.45747 5.57743 5.60460 5.63181 5.72924 5.75959 5.78143 5.85131 5.91561 5.99085 6.11857 6.18335 6.31747 6.34035 6.38131 6.41524 6.51472 6.61643 6.66923 6.72829 6.87247 7.01776 7.64515 7.72299 7.85266 8.33494 8.42534 9.45421 10.00615 10.35674 11.37466 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029156 B = 0.002129 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.124677 B =13147.919990 C =13477.539382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.126 3.874 3 H 0.069 0.931 4 C 0.171 3.829 5 H 0.070 0.930 6 N -0.713 5.713 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.930 5.930 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.160 4.160 16 C 0.103 3.897 17 N -0.608 5.608 18 C 0.528 3.472 19 O -0.538 6.538 20 C -0.104 4.104 21 C -0.038 4.038 22 C -0.094 4.094 23 C -0.099 4.099 24 C -0.103 4.103 25 C -0.057 4.057 26 C -0.181 4.181 27 C 0.126 3.874 28 N -0.473 5.473 29 C 0.130 3.870 30 C -0.081 4.081 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.388 0.612 35 H 0.255 0.745 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.157 0.843 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.155 5.813 -22.333 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 H 0.087 0.913 4 C 0.059 3.941 5 H 0.088 0.912 6 N -0.355 5.355 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.201 4.201 16 C -0.019 4.019 17 N -0.342 5.342 18 C 0.316 3.684 19 O -0.416 6.416 20 C -0.143 4.143 21 C -0.040 4.040 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.105 4.105 25 C -0.083 4.083 26 C -0.201 4.201 27 C -0.047 4.047 28 N -0.181 5.181 29 C 0.009 3.991 30 C -0.100 4.100 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.225 0.775 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.155 0.845 45 H 0.153 0.847 46 H 0.174 0.826 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.553 6.511 -21.820 23.990 hybrid contribution -1.044 -0.805 0.374 1.370 sum 6.509 5.706 -21.445 23.126 Atomic orbital electron populations 1.21908 0.94285 1.02826 1.01593 1.22000 0.95423 0.95576 0.84721 0.91280 1.21199 0.89101 0.91647 0.92128 0.91233 1.42554 1.32680 1.51430 1.08863 1.19292 1.10794 1.21147 0.86135 0.90966 1.24752 0.97922 1.00120 0.97922 1.69670 1.18459 1.35530 1.34146 0.86123 0.77266 0.77996 0.84792 1.20519 1.21886 1.21910 1.23515 0.99278 1.02374 0.94935 1.22321 0.94419 0.88827 0.96355 1.48662 1.52101 1.28599 1.04869 1.19945 0.80879 0.85374 0.82205 1.90706 1.39900 1.27763 1.83182 1.20753 1.02974 1.00326 0.90285 1.19082 0.94397 0.96001 0.94547 1.20834 0.95670 0.99771 0.94969 1.20910 0.99066 0.96046 0.95747 1.18848 0.96459 0.99048 0.96152 1.21472 0.98882 0.94397 0.93526 1.21851 0.96527 0.99785 1.01973 1.22933 0.94553 0.96766 0.90456 1.68021 1.31590 1.08492 1.10025 1.18792 0.91098 0.94230 0.94998 1.20571 1.00482 0.95595 0.93339 0.91557 0.92819 0.91649 0.77549 0.93485 0.92043 0.89416 0.91703 0.90969 0.87832 0.87608 0.85337 0.85146 0.84513 0.84686 0.82568 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.48 37.16 0.32 -2.50 16 2 C 0.13 2.21 3.43 -66.95 -0.23 1.98 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.17 3.17 3.48 -66.10 -0.23 2.94 16 5 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 6 N -0.71 -16.49 4.55 -51.65 -0.23 -16.73 16 7 C -0.24 -6.31 9.96 -15.05 -0.15 -6.46 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -26.95 13.06 55.49 0.72 -26.23 16 11 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 C -0.16 -2.47 6.77 -24.58 -0.17 -2.64 16 16 C 0.10 1.45 6.67 -2.53 -0.02 1.43 16 17 N -0.61 -9.51 3.07 -163.01 -0.50 -10.01 16 18 C 0.53 8.21 7.64 -10.99 -0.08 8.13 16 19 O -0.54 -10.28 15.08 5.56 0.08 -10.20 16 20 C -0.10 -1.18 4.80 -29.03 -0.14 -1.32 16 21 C -0.04 -0.47 4.34 -104.98 -0.46 -0.92 16 22 C -0.09 -1.08 9.59 -39.92 -0.38 -1.46 16 23 C -0.10 -1.04 9.78 -39.51 -0.39 -1.43 16 24 C -0.10 -1.19 5.74 -106.80 -0.61 -1.80 16 25 C -0.06 -0.50 9.90 -39.22 -0.39 -0.89 16 26 C -0.18 -1.42 10.03 -39.78 -0.40 -1.82 16 27 C 0.13 1.18 11.15 -17.46 -0.19 0.99 16 28 N -0.47 -6.05 10.34 -10.97 -0.11 -6.16 16 29 C 0.13 1.72 6.60 -84.86 -0.56 1.16 16 30 C -0.08 -1.06 9.58 -39.47 -0.38 -1.43 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.05 1.03 6.90 -51.93 -0.36 0.67 16 33 H 0.06 1.36 6.24 -51.93 -0.32 1.04 16 34 H 0.39 9.67 5.69 -40.82 -0.23 9.44 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.06 0.70 7.48 -51.93 -0.39 0.32 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.10 0.96 7.77 -51.93 -0.40 0.55 16 41 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16 42 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 44 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 46 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 47 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -32.88 385.83 -10.55 -43.43 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.74 Total: 9.95 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -4.55 Total: -6.44 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.12 Total: -59.13 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.88 -10.55 -43.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986421319.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.223 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds