Wall clock time and date at job start Sat Apr 11 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.87275 * 2 1 4 4 C 1.54321 * 109.88193 * 121.02002 * 2 1 3 5 5 H 1.09004 * 110.71712 * 259.96857 * 4 2 1 6 6 N 1.46497 * 110.72191 * 23.24509 * 4 2 1 7 7 C 1.36943 * 119.99606 * 205.00169 * 6 4 2 8 8 H 1.07995 * 120.00487 * 0.02562 * 7 6 4 9 9 C 1.38821 * 119.99507 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99890 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99550 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47415 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47000 * 120.00139 * 11 9 7 14 14 H 1.48501 * 109.46765 * 239.99514 * 11 9 7 15 15 C 1.55157 * 102.94161 * 141.60956 * 4 2 1 16 16 C 1.54908 * 101.58223 * 324.49347 * 15 4 2 17 17 N 1.47021 * 109.87884 * 238.82674 * 2 1 3 18 18 C 1.34777 * 125.65069 * 61.59396 * 17 2 1 19 19 O 1.21278 * 119.99944 * 359.97438 * 18 17 2 20 20 C 1.50697 * 120.00010 * 179.97438 * 18 17 2 21 21 C 1.50704 * 109.46965 * 180.02562 * 20 18 17 22 22 C 1.39356 * 119.46262 * 269.72744 * 21 20 18 23 23 C 1.36139 * 120.86355 * 179.73396 * 22 21 20 24 24 C 1.40421 * 119.61721 * 0.55652 * 23 22 21 25 25 C 1.40773 * 121.38005 * 179.72590 * 24 23 22 26 26 C 1.36576 * 118.15266 * 179.97438 * 25 24 23 27 27 C 1.39331 * 119.93571 * 359.97438 * 26 25 24 28 28 N 1.31090 * 121.74665 * 359.97438 * 27 26 25 29 29 C 1.33679 * 121.32421 * 0.04897 * 28 27 26 30 30 C 1.36076 * 119.46688 * 90.00060 * 21 20 18 31 31 H 1.09001 * 109.47002 * 298.97991 * 1 2 3 32 32 H 1.08993 * 109.46955 * 58.98429 * 1 2 3 33 33 H 1.09000 * 109.47050 * 178.98257 * 1 2 3 34 34 H 0.96998 * 120.00217 * 25.00102 * 6 4 2 35 35 H 0.97000 * 119.99370 * 179.97438 * 10 9 7 36 36 H 1.08996 * 111.00404 * 82.57307 * 15 4 2 37 37 H 1.09003 * 111.00435 * 206.38408 * 15 4 2 38 38 H 1.09005 * 110.36727 * 155.84913 * 16 15 4 39 39 H 1.08997 * 110.36976 * 278.06472 * 16 15 4 40 40 H 1.09001 * 109.47226 * 299.99805 * 20 18 17 41 41 H 1.08998 * 109.47229 * 59.99946 * 20 18 17 42 42 H 1.08004 * 119.56625 * 359.97438 * 22 21 20 43 43 H 1.08000 * 120.18860 * 180.23052 * 23 22 21 44 44 H 1.07998 * 120.91898 * 359.95620 * 25 24 23 45 45 H 1.07997 * 120.03059 * 179.97438 * 26 25 24 46 46 H 1.07998 * 119.12792 * 180.02562 * 27 26 25 47 47 H 1.08002 * 120.12595 * 0.02562 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 2.3530 -0.0432 2.0201 6 7 1.0472 -1.6832 1.7497 7 6 1.0608 -2.0575 3.0669 8 1 1.8140 -1.6631 3.7327 9 6 0.1063 -2.9442 3.5462 10 7 -0.8120 -3.4246 2.7348 11 14 0.1252 -3.4555 5.3427 12 1 1.2503 -2.7801 6.0378 13 1 -1.1575 -3.0659 5.9818 14 1 0.2980 -4.9274 5.4366 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8805 -0.7343 17 7 2.0300 -0.7157 -1.1830 18 6 1.8071 -0.3655 -2.4652 19 8 1.1424 0.6166 -2.7189 20 6 2.3839 -1.1945 -3.5838 21 6 1.9915 -0.5929 -4.9087 22 6 0.8122 -1.0053 -5.5263 23 6 0.4276 -0.4770 -6.7206 24 6 1.2348 0.4877 -7.3448 25 6 0.8757 1.0542 -8.5825 26 6 1.7091 1.9874 -9.1300 27 6 2.8768 2.3532 -8.4636 28 7 3.2075 1.8243 -7.3107 29 6 2.4363 0.9055 -6.7208 30 6 2.7971 0.3400 -5.4852 31 1 -0.3633 0.4979 0.8990 32 1 -0.3633 0.5295 -0.8807 33 1 -0.3633 -1.0275 -0.0182 34 1 0.3705 -2.0372 1.1518 35 1 -1.4787 -4.0445 3.0697 36 1 4.1654 -0.8680 0.6615 37 1 3.4856 -2.4090 1.2832 38 1 3.6716 -2.0358 -1.3896 39 1 2.1902 -2.7736 -0.7094 40 1 3.4706 -1.2113 -3.5005 41 1 1.9987 -2.2120 -3.5179 42 1 0.1934 -1.7510 -5.0493 43 1 -0.4903 -0.8019 -7.1877 44 1 -0.0334 0.7589 -9.0851 45 1 1.4634 2.4413 -10.0787 46 1 3.5262 3.0927 -8.9083 47 1 3.7101 0.6449 -4.9954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986421319.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:15 Heat of formation + Delta-G solvation = 19.584103 kcal Electronic energy + Delta-G solvation = -28550.341293 eV Core-core repulsion = 24697.422752 eV Total energy + Delta-G solvation = -3852.918541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.85132 -41.19155 -39.16622 -37.96494 -35.72831 -34.63096 -33.59075 -32.80623 -32.14798 -31.08981 -30.65311 -28.62130 -26.73206 -25.51261 -25.04336 -24.30174 -23.30136 -22.96495 -21.16072 -19.83413 -19.40121 -18.78420 -18.03959 -17.92590 -17.79694 -17.33318 -16.45419 -16.11973 -15.70673 -15.57873 -15.41586 -15.28817 -15.18009 -14.95826 -14.67184 -14.27597 -14.08240 -13.95693 -13.88746 -13.68682 -13.31306 -13.00136 -12.94488 -12.87113 -12.63603 -12.49194 -12.46777 -12.35412 -12.27442 -12.21547 -11.99536 -11.63962 -11.48517 -11.43827 -10.92523 -10.81285 -10.44510 -9.63979 -9.61226 -9.20035 -8.98146 -7.91430 -5.19043 -0.52641 -0.15486 1.04671 1.49689 1.51022 1.59976 1.65727 1.83349 2.19616 2.58330 3.13595 3.30770 3.39757 3.59161 3.63354 3.70164 3.83302 3.89200 3.91242 4.04001 4.07123 4.09727 4.20840 4.27786 4.31458 4.33184 4.42183 4.54599 4.56429 4.61712 4.63079 4.76292 4.82017 4.87368 4.96847 5.02703 5.07008 5.08562 5.15185 5.24406 5.34795 5.39798 5.41307 5.47429 5.51027 5.58758 5.62696 5.91239 6.30410 6.62494 6.97303 7.19534 7.37853 8.11633 8.35493 9.31977 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029156 B = 0.002129 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.124677 B =13147.919990 C =13477.539382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.131 3.869 3 H 0.075 0.925 4 C 0.162 3.838 5 H 0.071 0.929 6 N -0.723 5.723 7 C -0.232 4.232 8 H 0.080 0.920 9 C -0.074 4.074 10 N -0.968 5.968 11 Si 0.968 3.032 12 H -0.265 1.265 13 H -0.300 1.300 14 H -0.296 1.296 15 C -0.148 4.148 16 C 0.107 3.893 17 N -0.608 5.608 18 C 0.525 3.475 19 O -0.579 6.579 20 C -0.094 4.094 21 C -0.047 4.047 22 C -0.116 4.116 23 C -0.095 4.095 24 C -0.124 4.124 25 C -0.060 4.060 26 C -0.175 4.175 27 C 0.122 3.878 28 N -0.513 5.513 29 C 0.101 3.899 30 C -0.103 4.103 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.377 0.623 35 H 0.248 0.752 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.058 0.942 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.139 0.861 43 H 0.158 0.842 44 H 0.169 0.831 45 H 0.174 0.826 46 H 0.186 0.814 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.451 6.113 -24.188 26.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.027 3.973 3 H 0.093 0.907 4 C 0.052 3.948 5 H 0.089 0.911 6 N -0.364 5.364 7 C -0.364 4.364 8 H 0.098 0.902 9 C -0.267 4.267 10 N -0.619 5.619 11 Si 0.799 3.201 12 H -0.189 1.189 13 H -0.228 1.228 14 H -0.224 1.224 15 C -0.188 4.188 16 C -0.015 4.015 17 N -0.342 5.342 18 C 0.316 3.684 19 O -0.459 6.459 20 C -0.133 4.133 21 C -0.049 4.049 22 C -0.134 4.134 23 C -0.114 4.114 24 C -0.126 4.126 25 C -0.086 4.086 26 C -0.195 4.195 27 C -0.051 4.051 28 N -0.222 5.222 29 C -0.019 4.019 30 C -0.121 4.121 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.211 0.789 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.157 0.843 43 H 0.176 0.824 44 H 0.186 0.814 45 H 0.192 0.808 46 H 0.203 0.797 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.915 6.827 -23.677 26.204 hybrid contribution -1.415 -0.732 0.799 1.783 sum 7.500 6.095 -22.878 24.835 Atomic orbital electron populations 1.21732 0.95847 1.00956 1.00684 1.21805 0.94049 0.96040 0.85428 0.90694 1.21408 0.89425 0.91344 0.92588 0.91130 1.42660 1.33674 1.52164 1.07944 1.19661 1.09801 1.19563 0.87355 0.90209 1.25476 0.98376 1.01324 1.01492 1.69821 1.19560 1.36857 1.35702 0.85141 0.77069 0.77207 0.80727 1.18905 1.22817 1.22381 1.23362 0.98502 1.01765 0.95212 1.22395 0.95310 0.87444 0.96379 1.48703 1.52145 1.28783 1.04541 1.20678 0.80032 0.85084 0.82648 1.90686 1.41734 1.29728 1.83727 1.20776 1.04332 1.00179 0.88031 1.19208 0.94748 0.96093 0.94854 1.21068 0.95862 1.00699 0.95771 1.21271 0.99643 0.95134 0.95334 1.19168 0.96236 0.99724 0.97497 1.21907 1.00093 0.94036 0.92523 1.22278 0.95305 0.98913 1.02972 1.23596 0.95526 0.96416 0.89530 1.68019 1.32691 1.09640 1.11815 1.19053 0.92243 0.95042 0.95545 1.20676 1.00898 0.96508 0.94047 0.92666 0.93381 0.93868 0.78857 0.94266 0.89152 0.90563 0.87381 0.92352 0.85236 0.85552 0.84334 0.82396 0.81354 0.80830 0.79731 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.48 71.98 0.61 -4.64 16 2 C 0.13 4.54 3.43 45.34 0.16 4.70 16 3 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 4 C 0.16 5.90 3.48 46.18 0.16 6.06 16 5 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 6 N -0.72 -33.72 4.55 -317.32 -1.44 -35.16 16 7 C -0.23 -12.05 9.96 84.03 0.84 -11.22 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 10 N -0.97 -57.53 13.06 21.65 0.28 -57.25 16 11 Si 0.97 44.85 29.55 68.60 2.03 46.87 16 12 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 13 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 14 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 15 C -0.15 -4.25 6.77 31.99 0.22 -4.03 16 16 C 0.11 2.75 6.67 86.85 0.58 3.33 16 17 N -0.61 -18.35 3.07 -788.04 -2.42 -20.76 16 18 C 0.53 15.97 7.64 87.66 0.67 16.64 16 19 O -0.58 -22.35 15.08 -3.02 -0.05 -22.39 16 20 C -0.09 -2.00 4.80 29.10 0.14 -1.86 16 21 C -0.05 -1.14 4.34 -20.10 -0.09 -1.22 16 22 C -0.12 -2.59 9.59 22.05 0.21 -2.38 16 23 C -0.10 -1.91 9.78 22.31 0.22 -1.69 16 24 C -0.12 -2.74 5.74 -21.28 -0.12 -2.87 16 25 C -0.06 -0.90 9.90 22.50 0.22 -0.68 16 26 C -0.18 -2.23 10.03 22.14 0.22 -2.01 16 27 C 0.12 2.08 11.15 85.07 0.95 3.03 16 28 N -0.51 -13.03 10.34 -188.63 -1.95 -14.98 16 29 C 0.10 2.70 6.60 40.29 0.27 2.97 16 30 C -0.10 -2.72 9.58 22.34 0.21 -2.50 16 31 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.05 1.91 6.90 -2.39 -0.02 1.89 16 33 H 0.04 1.87 6.24 -2.39 -0.01 1.86 16 34 H 0.38 19.29 5.69 -92.71 -0.53 18.76 16 35 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.11 1.91 7.48 -2.38 -0.02 1.89 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.13 2.06 7.77 -2.39 -0.02 2.04 16 41 H 0.13 2.17 8.08 -2.39 -0.02 2.15 16 42 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 45 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 46 H 0.19 1.82 8.06 -2.91 -0.02 1.80 16 47 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -74.37 385.83 2.84 -71.54 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.46 Total: 34.17 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 5.93 Total: -2.03 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -5.53 Total: -128.15 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.05 Total: -22.39 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -74.37 2.84 -71.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986421319.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.120 kcal (2) G-P(sol) polarization free energy of solvation -74.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds