Wall clock time and date at job start Sat Apr 11 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.49442 * 2 1 4 4 C 1.53190 * 109.49955 * 239.92825 * 2 1 3 5 5 N 1.46928 * 108.77574 * 185.41075 * 4 2 1 6 6 C 1.34774 * 120.63075 * 233.58257 * 5 4 2 7 7 O 1.21565 * 119.99685 * 183.81443 * 6 5 4 8 8 C 1.47762 * 119.99945 * 3.82378 * 6 5 4 9 9 C 1.40595 * 120.26560 * 309.34191 * 8 6 5 10 10 N 1.30799 * 121.53712 * 179.97438 * 9 8 6 11 11 C 1.33825 * 121.71990 * 0.05437 * 10 9 8 12 12 C 1.40523 * 120.82447 * 179.97438 * 11 10 9 13 13 C 1.36133 * 119.81642 * 179.97438 * 12 11 10 14 14 C 1.39344 * 121.09169 * 359.76281 * 13 12 11 15 15 C 1.36149 * 120.82361 * 0.49702 * 14 13 12 16 16 C 1.40532 * 119.62231 * 359.49145 * 15 14 13 17 17 C 1.39013 * 120.26723 * 129.32782 * 8 6 5 18 18 C 1.46921 * 118.73399 * 53.86483 * 5 4 2 19 19 C 1.53624 * 108.54636 * 306.09199 * 18 5 4 20 20 C 1.53037 * 109.24224 * 54.85463 * 19 18 5 21 21 H 1.08996 * 109.45203 * 178.49589 * 20 19 18 22 22 N 1.46507 * 109.45546 * 58.53696 * 20 19 18 23 23 C 1.36938 * 119.99980 * 84.93182 * 22 20 19 24 24 H 1.07994 * 119.99986 * 359.97438 * 23 22 20 25 25 C 1.38812 * 119.99874 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99960 * 359.97438 * 25 23 22 27 27 Si 1.86792 * 120.00140 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47160 * 0.02562 * 27 25 23 29 29 H 1.48506 * 109.47226 * 119.99941 * 27 25 23 30 30 H 1.48503 * 109.47434 * 240.00061 * 27 25 23 31 31 H 1.08999 * 109.47032 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47562 * 300.06899 * 1 2 3 33 33 H 1.08995 * 109.47350 * 60.07223 * 1 2 3 34 34 H 1.09006 * 109.58582 * 65.62577 * 4 2 1 35 35 H 1.09000 * 109.70443 * 305.27102 * 4 2 1 36 36 H 1.08000 * 119.23438 * 359.97438 * 9 8 6 37 37 H 1.08002 * 120.09562 * 359.97438 * 12 11 10 38 38 H 1.08004 * 119.45780 * 180.02562 * 13 12 11 39 39 H 1.07993 * 119.58811 * 180.28960 * 14 13 12 40 40 H 1.08000 * 120.18485 * 179.76268 * 15 14 13 41 41 H 1.07999 * 121.01772 * 0.03725 * 17 8 6 42 42 H 1.09003 * 109.59024 * 65.92895 * 18 5 4 43 43 H 1.09006 * 109.58555 * 186.34864 * 18 5 4 44 44 H 1.08998 * 109.63097 * 294.86817 * 19 18 5 45 45 H 1.08998 * 109.46132 * 174.74455 * 19 18 5 46 46 H 0.96999 * 119.99916 * 264.92967 * 22 20 19 47 47 H 0.97000 * 120.00108 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7236 -1.2497 5 7 3.5046 -0.8288 -1.1697 6 6 4.2811 -0.3860 -2.1783 7 8 5.4859 -0.5414 -2.1312 8 6 3.6680 0.2885 -3.3413 9 6 2.5875 -0.3057 -4.0166 10 7 2.0258 0.2695 -5.0483 11 6 2.4508 1.4501 -5.5135 12 6 1.8338 2.0510 -6.6239 13 6 2.2825 3.2527 -7.0797 14 6 3.3459 3.9058 -6.4598 15 6 3.9728 3.3533 -5.3849 16 6 3.5357 2.1139 -4.8872 17 6 4.1548 1.5158 -3.7764 18 6 4.1050 -1.4317 0.0281 19 6 3.5708 -0.6953 1.2660 20 6 2.0408 -0.7233 1.2482 21 1 1.6583 -0.2248 2.1389 22 7 1.5783 -2.1133 1.2304 23 6 1.4481 -2.8067 2.4041 24 1 1.6867 -2.3290 3.3428 25 6 1.0095 -4.1236 2.3873 26 7 0.7182 -4.7056 1.2432 27 14 0.8325 -5.0696 3.9882 28 1 1.2194 -4.1958 5.1249 29 1 -0.5785 -5.5017 4.1545 30 1 1.7155 -6.2633 3.9580 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5149 0.8893 33 1 -0.3634 0.5127 -0.8906 34 1 1.7638 -0.1575 -2.1389 35 1 1.6054 -1.7213 -1.3008 36 1 2.2124 -1.2593 -3.6755 37 1 1.0058 1.5608 -7.1144 38 1 1.8038 3.7094 -7.9332 39 1 3.6792 4.8606 -6.8387 40 1 4.7985 3.8668 -4.9147 41 1 4.9839 1.9945 -3.2765 42 1 3.8339 -2.4862 0.0816 43 1 5.1896 -1.3332 -0.0177 44 1 3.9158 0.3386 1.2542 45 1 3.9333 -1.1896 2.1672 46 1 1.3643 -2.5425 0.3873 47 1 0.4120 -5.6260 1.2314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036192221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:31 Heat of formation + Delta-G solvation = 36.823479 kcal Electronic energy + Delta-G solvation = -29466.321628 eV Core-core repulsion = 25614.150643 eV Total energy + Delta-G solvation = -3852.170986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25502 -39.90322 -37.86547 -37.12241 -34.29647 -33.71458 -32.68223 -31.98434 -30.71101 -30.32864 -29.16794 -26.32595 -25.61505 -24.64449 -24.01801 -23.30895 -22.37558 -21.64393 -20.30561 -18.69047 -18.23713 -17.85264 -17.34737 -16.89427 -16.28634 -15.64156 -15.19062 -14.90895 -14.69314 -14.49176 -14.30137 -14.23188 -14.02993 -13.82100 -13.49370 -13.34111 -13.24302 -12.85770 -12.61493 -12.22633 -12.12410 -12.05008 -11.75934 -11.67891 -11.42547 -11.17553 -10.93409 -10.82216 -10.76921 -10.58175 -10.38128 -10.27528 -10.11837 -9.89406 -9.62734 -9.49270 -8.99716 -8.93709 -8.57670 -8.30622 -7.00051 -5.81416 -3.09717 0.03966 0.41487 1.65145 2.42418 2.84804 3.16255 3.40601 3.47016 3.48783 3.82053 3.99940 4.27311 4.36999 4.52719 4.55327 4.56230 4.69981 4.83035 4.93236 5.01347 5.17940 5.20707 5.34059 5.45875 5.55503 5.56550 5.59334 5.62989 5.70811 5.74934 5.77344 5.85308 5.89273 6.00769 6.04166 6.09452 6.18567 6.20420 6.30434 6.37704 6.45893 6.49777 6.54208 6.69226 6.74115 6.88678 6.93648 7.56527 7.63070 7.67773 8.21444 8.37130 9.49032 10.04563 10.39620 11.41092 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020995 B = 0.002730 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.319234 B =10252.956710 C =10664.625619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.104 3.896 5 N -0.590 5.590 6 C 0.560 3.440 7 O -0.542 6.542 8 C -0.174 4.174 9 C 0.163 3.837 10 N -0.473 5.473 11 C 0.136 3.864 12 C -0.095 4.095 13 C -0.097 4.097 14 C -0.121 4.121 15 C -0.088 4.088 16 C -0.108 4.108 17 C -0.006 4.006 18 C 0.120 3.880 19 C -0.149 4.149 20 C 0.179 3.821 21 H 0.052 0.948 22 N -0.718 5.718 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.292 1.292 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.168 0.832 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.146 0.854 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.395 17.594 -14.361 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.018 4.018 5 N -0.321 5.321 6 C 0.347 3.653 7 O -0.420 6.420 8 C -0.179 4.179 9 C -0.011 4.011 10 N -0.180 5.180 11 C 0.015 3.985 12 C -0.114 4.114 13 C -0.117 4.117 14 C -0.139 4.139 15 C -0.107 4.107 16 C -0.110 4.110 17 C -0.032 4.032 18 C -0.002 4.002 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.070 0.930 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.185 0.815 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.164 0.836 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.218 0.782 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.285 17.099 -14.637 22.747 hybrid contribution 0.470 -0.412 1.116 1.279 sum 3.755 16.688 -13.521 21.803 Atomic orbital electron populations 1.21679 0.94045 1.03368 1.00500 1.21702 0.96596 0.98802 0.95690 0.91582 1.22111 0.78967 1.02058 0.98711 1.48082 1.07117 1.58754 1.18136 1.18022 0.86385 0.78757 0.82181 1.90779 1.14040 1.57913 1.79276 1.20988 0.99699 0.97647 0.99593 1.23213 0.89593 0.98937 0.89337 1.68014 1.28781 1.09091 1.12118 1.19021 0.92991 0.91053 0.95403 1.20844 1.00096 0.95385 0.95034 1.20966 0.96351 0.94746 0.99624 1.20933 0.96380 1.00351 0.96236 1.21047 0.99480 0.93714 0.96453 1.18783 0.98009 0.96895 0.97313 1.21783 0.96229 0.92564 0.92646 1.21735 0.97792 0.98259 0.82366 1.22603 1.00112 0.98680 0.97582 1.20218 0.90924 0.87363 0.94663 0.93038 1.42463 1.78987 1.07669 1.06957 1.19250 1.37069 0.93899 0.86571 0.91193 1.24700 1.02254 0.97177 0.96630 1.69649 1.51734 1.13038 1.23606 0.86166 0.77254 0.79997 0.83033 1.20653 1.21982 1.21968 0.90842 0.92654 0.93865 0.90379 0.89763 0.81457 0.84480 0.85178 0.85373 0.85013 0.83602 0.89618 0.90200 0.93375 0.90645 0.78166 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.05 37.16 0.34 -1.72 16 2 C -0.11 -1.63 2.67 -90.50 -0.24 -1.88 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.10 1.54 4.35 -3.71 -0.02 1.52 16 5 N -0.59 -9.34 2.97 -173.64 -0.51 -9.85 16 6 C 0.56 8.96 7.24 -12.37 -0.09 8.87 16 7 O -0.54 -10.25 16.47 5.31 0.09 -10.16 16 8 C -0.17 -2.37 5.01 -104.83 -0.52 -2.89 16 9 C 0.16 2.13 8.51 -17.10 -0.15 1.98 16 10 N -0.47 -6.30 10.30 -10.67 -0.11 -6.41 16 11 C 0.14 1.65 6.61 -84.79 -0.56 1.09 16 12 C -0.10 -0.91 9.97 -39.48 -0.39 -1.31 16 13 C -0.10 -0.71 9.94 -39.93 -0.40 -1.11 16 14 C -0.12 -0.86 9.96 -39.92 -0.40 -1.26 16 15 C -0.09 -0.75 9.77 -39.47 -0.39 -1.13 16 16 C -0.11 -1.21 5.74 -106.82 -0.61 -1.82 16 17 C -0.01 -0.07 9.63 -38.43 -0.37 -0.44 16 18 C 0.12 2.08 6.19 -3.49 -0.02 2.05 16 19 C -0.15 -2.52 5.79 -26.39 -0.15 -2.67 16 20 C 0.18 3.23 2.53 -67.89 -0.17 3.06 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -16.06 3.63 -53.39 -0.19 -16.25 16 23 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 26 N -0.93 -26.68 13.06 55.49 0.72 -25.95 16 27 Si 0.90 21.70 29.55 -169.99 -5.02 16.67 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 31 H 0.07 1.28 7.53 -51.93 -0.39 0.89 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 1.02 4.55 -51.93 -0.24 0.79 16 35 H 0.08 1.37 6.65 -51.93 -0.35 1.03 16 36 H 0.17 2.03 7.05 -52.49 -0.37 1.66 16 37 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.09 1.70 7.74 -51.93 -0.40 1.30 16 43 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.38 9.09 5.93 -40.82 -0.24 8.85 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -30.85 377.37 -10.28 -41.13 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -6.54 Total: 9.43 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -4.39 Total: -4.29 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.09 Total: -58.47 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.85 -10.28 -41.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036192221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.954 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds