Wall clock time and date at job start Sat Apr 11 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.52082 * 2 1 4 4 C 1.53190 * 109.49718 * 239.92283 * 2 1 3 5 5 N 1.46929 * 108.77797 * 185.41231 * 4 2 1 6 6 C 1.34771 * 120.63207 * 233.58585 * 5 4 2 7 7 O 1.21548 * 120.00467 * 183.47016 * 6 5 4 8 8 C 1.47894 * 120.00032 * 3.47161 * 6 5 4 9 9 C 1.40566 * 119.70610 * 129.92694 * 8 6 5 10 10 C 1.35816 * 120.73621 * 180.02562 * 9 8 6 11 11 C 1.40551 * 119.98126 * 0.02562 * 10 9 8 12 12 C 1.40824 * 121.13529 * 180.02562 * 11 10 9 13 13 C 1.36553 * 118.19829 * 179.97438 * 12 11 10 14 14 C 1.39421 * 119.93923 * 0.02562 * 13 12 11 15 15 N 1.31017 * 121.71305 * 359.97438 * 14 13 12 16 16 C 1.33750 * 121.35268 * 359.97438 * 15 14 13 17 17 C 1.38402 * 119.70273 * 309.72278 * 8 6 5 18 18 C 1.46921 * 118.73857 * 53.85518 * 5 4 2 19 19 C 1.53627 * 108.54437 * 306.09836 * 18 5 4 20 20 C 1.53034 * 109.49896 * 120.08365 * 2 1 3 21 21 H 1.09000 * 109.46152 * 301.33311 * 20 2 1 22 22 N 1.46494 * 109.46254 * 61.31100 * 20 2 1 23 23 C 1.36942 * 120.00313 * 204.99957 * 22 20 2 24 24 H 1.08007 * 119.99603 * 0.02562 * 23 22 20 25 25 C 1.38806 * 120.00240 * 179.97438 * 23 22 20 26 26 N 1.31621 * 120.00025 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 120.00041 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47233 * 89.99622 * 27 25 23 29 29 H 1.48501 * 109.47189 * 209.99831 * 27 25 23 30 30 H 1.48496 * 109.46748 * 329.99671 * 27 25 23 31 31 H 1.09005 * 109.46592 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46841 * 300.07386 * 1 2 3 33 33 H 1.08999 * 109.47411 * 60.08359 * 1 2 3 34 34 H 1.09001 * 109.58832 * 65.62040 * 4 2 1 35 35 H 1.09007 * 109.70553 * 305.26995 * 4 2 1 36 36 H 1.07999 * 119.63992 * 0.04379 * 9 8 6 37 37 H 1.07998 * 120.01265 * 180.02562 * 10 9 8 38 38 H 1.07996 * 120.89974 * 359.97438 * 12 11 10 39 39 H 1.07994 * 120.02711 * 179.97438 * 13 12 11 40 40 H 1.07998 * 119.14211 * 180.02562 * 14 13 12 41 41 H 1.07993 * 120.23970 * 359.97065 * 17 8 6 42 42 H 1.09001 * 109.58533 * 65.92894 * 18 5 4 43 43 H 1.08999 * 109.59228 * 186.35752 * 18 5 4 44 44 H 1.08990 * 109.63556 * 294.86506 * 19 18 5 45 45 H 1.08997 * 109.45696 * 174.73779 * 19 18 5 46 46 H 0.97003 * 120.00185 * 25.00464 * 22 20 2 47 47 H 0.96998 * 120.00046 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 3.5047 -0.8290 -1.1697 6 6 4.2811 -0.3863 -2.1784 7 8 5.4863 -0.5361 -2.1285 8 6 3.6668 0.2819 -3.3460 9 6 4.1718 1.5173 -3.7871 10 6 3.6233 2.1494 -4.8567 11 6 2.5380 1.5687 -5.5352 12 6 1.9511 2.2026 -6.6473 13 6 0.8998 1.5846 -7.2618 14 6 0.4365 0.3596 -6.7836 15 7 0.9848 -0.2275 -5.7486 16 6 2.0179 0.3236 -5.1023 17 6 2.6025 -0.3170 -3.9973 18 6 4.1052 -1.4317 0.0282 19 6 3.5710 -0.6949 1.2659 20 6 2.0409 -0.7231 1.2482 21 1 1.6583 -0.2245 2.1388 22 7 1.5787 -2.1131 1.2305 23 6 1.4486 -2.8065 2.4042 24 1 1.6863 -2.3284 3.3431 25 6 1.0102 -4.1234 2.3875 26 7 0.8857 -4.7900 3.5156 27 14 0.5985 -4.9502 0.7637 28 1 1.8139 -5.6086 0.2213 29 1 -0.4608 -5.9680 0.9811 30 1 0.1149 -3.9310 -0.2019 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5149 0.8893 33 1 -0.3634 0.5125 -0.8907 34 1 1.7637 -0.1578 -2.1389 35 1 1.6054 -1.7215 -1.3007 36 1 5.0055 1.9688 -3.2699 37 1 4.0209 3.0981 -5.1858 38 1 2.3223 3.1518 -7.0044 39 1 0.4273 2.0447 -8.1170 40 1 -0.3954 -0.1180 -7.2797 41 1 2.2214 -1.2680 -3.6560 42 1 3.8340 -2.4860 0.0818 43 1 5.1897 -1.3331 -0.0176 44 1 3.9159 0.3389 1.2540 45 1 3.9335 -1.1891 2.1672 46 1 1.3650 -2.5425 0.3874 47 1 0.5797 -5.7104 3.5038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036213895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:36 Heat of formation + Delta-G solvation = 42.633237 kcal Electronic energy + Delta-G solvation = -29757.216934 eV Core-core repulsion = 25905.297879 eV Total energy + Delta-G solvation = -3851.919056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29630 -40.13324 -38.07970 -36.92397 -34.50404 -33.83178 -32.72529 -31.94106 -30.92623 -30.45301 -29.60058 -26.43325 -25.90373 -24.56160 -24.08615 -23.04188 -22.55267 -21.69103 -20.41513 -18.76964 -18.16116 -17.87101 -17.47482 -17.26085 -16.35669 -15.81381 -15.24226 -15.01516 -14.72131 -14.60689 -14.47945 -14.38637 -14.01726 -13.78339 -13.56729 -13.45135 -13.39001 -12.94577 -12.61659 -12.36445 -12.20398 -12.08920 -11.88778 -11.84788 -11.60745 -11.39751 -11.03647 -10.97837 -10.80542 -10.64907 -10.43049 -10.24443 -10.07690 -9.88398 -9.70888 -9.56135 -9.11015 -8.95901 -8.57949 -8.40989 -7.29284 -5.79284 -3.14776 -0.04239 0.37330 1.57437 2.31004 2.82208 3.09235 3.33543 3.36738 3.43806 3.74089 3.92120 4.18522 4.31827 4.42439 4.50837 4.56046 4.67158 4.74522 4.89008 4.95084 5.07183 5.11630 5.25626 5.34363 5.36849 5.47807 5.54067 5.54542 5.57911 5.65780 5.69661 5.70228 5.78603 5.91246 5.93355 6.02317 6.03185 6.12952 6.20266 6.27950 6.35451 6.39225 6.45895 6.59166 6.66107 6.71995 6.87042 7.48179 7.56260 7.96780 8.14648 8.39698 9.17592 9.90180 10.09609 11.39152 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.003454 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.808121 B = 8104.292426 C = 8997.373692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.100 3.900 5 N -0.593 5.593 6 C 0.555 3.445 7 O -0.538 6.538 8 C -0.096 4.096 9 C -0.073 4.073 10 C -0.100 4.100 11 C -0.092 4.092 12 C -0.060 4.060 13 C -0.172 4.172 14 C 0.130 3.870 15 N -0.466 5.466 16 C 0.121 3.879 17 C -0.059 4.059 18 C 0.118 3.882 19 C -0.148 4.148 20 C 0.185 3.815 21 H 0.061 0.939 22 N -0.743 5.743 23 C -0.240 4.240 24 H 0.091 0.909 25 C 0.007 3.993 26 N -0.933 5.933 27 Si 0.877 3.123 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.161 0.839 41 H 0.145 0.855 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.080 0.920 46 H 0.359 0.641 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.046 17.399 -21.194 27.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.091 0.909 4 C -0.023 4.023 5 N -0.325 5.325 6 C 0.342 3.658 7 O -0.416 6.416 8 C -0.101 4.101 9 C -0.091 4.091 10 C -0.119 4.119 11 C -0.094 4.094 12 C -0.086 4.086 13 C -0.191 4.191 14 C -0.043 4.043 15 N -0.174 5.174 16 C 0.001 3.999 17 C -0.078 4.078 18 C -0.003 4.003 19 C -0.189 4.189 20 C 0.075 3.925 21 H 0.079 0.921 22 N -0.387 5.387 23 C -0.370 4.370 24 H 0.109 0.891 25 C -0.189 4.189 26 N -0.581 5.581 27 Si 0.708 3.292 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.178 0.822 41 H 0.163 0.837 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.193 0.807 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.428 16.388 -20.485 26.272 hybrid contribution -0.150 0.003 -1.437 1.445 sum 1.278 16.391 -21.922 27.402 Atomic orbital electron populations 1.21687 0.94087 1.02974 1.00902 1.21755 0.96567 0.99270 0.95528 0.90936 1.22162 0.79105 1.01598 0.99407 1.48116 1.07069 1.58999 1.18277 1.18254 0.86479 0.78620 0.82404 1.90780 1.13924 1.57672 1.79265 1.19968 0.96530 0.96460 0.97186 1.20820 0.98995 0.93254 0.96045 1.20876 0.95316 1.00162 0.95497 1.18938 0.97567 0.95782 0.97086 1.21503 0.94558 0.99280 0.93244 1.21957 0.98199 0.97214 1.01777 1.23025 0.97588 0.92028 0.91689 1.68052 1.08272 1.33542 1.07545 1.18708 0.93637 0.91962 0.95638 1.21331 0.93290 1.00056 0.93127 1.21747 0.98218 0.97827 0.82556 1.22576 0.99587 0.99064 0.97672 1.20190 0.91121 0.86137 0.95073 0.92128 1.42830 1.80604 1.09420 1.05863 1.19048 1.37554 0.94110 0.86307 0.89146 1.24635 1.01537 0.96703 0.96022 1.69689 1.53137 1.10813 1.24445 0.86673 0.78215 0.79601 0.84730 1.21077 1.21703 1.20406 0.91511 0.92190 0.93671 0.89541 0.90874 0.84617 0.84592 0.84216 0.84367 0.82181 0.83737 0.90248 0.89789 0.92915 0.90120 0.80662 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.06 37.16 0.34 -1.65 16 2 C -0.11 -1.64 2.67 -90.50 -0.24 -1.88 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.10 1.45 4.31 -3.71 -0.02 1.44 16 5 N -0.59 -9.27 2.97 -173.60 -0.51 -9.79 16 6 C 0.56 8.75 7.22 -12.31 -0.09 8.66 16 7 O -0.54 -10.02 16.46 5.32 0.09 -9.94 16 8 C -0.10 -1.26 5.02 -105.01 -0.53 -1.79 16 9 C -0.07 -0.79 9.62 -39.57 -0.38 -1.17 16 10 C -0.10 -0.88 9.74 -39.58 -0.39 -1.27 16 11 C -0.09 -0.91 5.75 -106.72 -0.61 -1.52 16 12 C -0.06 -0.43 9.89 -39.21 -0.39 -0.82 16 13 C -0.17 -1.11 10.03 -39.75 -0.40 -1.51 16 14 C 0.13 1.09 11.15 -17.46 -0.19 0.90 16 15 N -0.47 -5.52 10.34 -10.98 -0.11 -5.64 16 16 C 0.12 1.46 6.60 -84.87 -0.56 0.90 16 17 C -0.06 -0.75 7.30 -38.68 -0.28 -1.03 16 18 C 0.12 2.00 6.19 -3.49 -0.02 1.98 16 19 C -0.15 -2.47 5.80 -26.38 -0.15 -2.63 16 20 C 0.18 3.28 2.53 -67.89 -0.17 3.11 16 21 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 22 N -0.74 -16.18 3.44 -53.39 -0.18 -16.37 16 23 C -0.24 -6.40 10.41 -15.06 -0.16 -6.56 16 24 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 26 N -0.93 -28.72 13.97 55.49 0.78 -27.95 16 27 Si 0.88 21.66 27.74 -169.99 -4.71 16.94 16 28 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 31 H 0.07 1.11 7.53 -51.93 -0.39 0.72 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.12 4.55 -51.93 -0.24 0.88 16 35 H 0.07 1.16 6.65 -51.92 -0.35 0.82 16 36 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 39 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.14 1.88 7.01 -52.49 -0.37 1.51 16 42 H 0.08 1.50 7.73 -51.93 -0.40 1.10 16 43 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 46 H 0.36 7.82 3.79 -40.82 -0.15 7.67 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -33.21 374.13 -9.87 -43.08 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.50 Total: 8.76 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -4.34 Total: -4.74 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.04 Total: -59.74 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.21 -9.87 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036213895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.710 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds