Wall clock time and date at job start Sat Apr 11 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.52082 * 2 1 4 4 C 1.53190 * 109.49718 * 239.92283 * 2 1 3 5 5 N 1.46929 * 108.77797 * 185.41231 * 4 2 1 6 6 C 1.34771 * 120.63207 * 233.58585 * 5 4 2 7 7 O 1.21548 * 120.00467 * 183.47016 * 6 5 4 8 8 C 1.47894 * 120.00032 * 3.47161 * 6 5 4 9 9 C 1.40566 * 119.70610 * 129.92694 * 8 6 5 10 10 C 1.35816 * 120.73621 * 180.02562 * 9 8 6 11 11 C 1.40551 * 119.98126 * 0.02562 * 10 9 8 12 12 C 1.40824 * 121.13529 * 180.02562 * 11 10 9 13 13 C 1.36553 * 118.19829 * 179.97438 * 12 11 10 14 14 C 1.39421 * 119.93923 * 0.02562 * 13 12 11 15 15 N 1.31017 * 121.71305 * 359.97438 * 14 13 12 16 16 C 1.33750 * 121.35268 * 359.97438 * 15 14 13 17 17 C 1.38402 * 119.70273 * 309.72278 * 8 6 5 18 18 C 1.46921 * 118.73857 * 53.85518 * 5 4 2 19 19 C 1.53627 * 108.54437 * 306.09836 * 18 5 4 20 20 C 1.53034 * 109.49896 * 120.08365 * 2 1 3 21 21 H 1.09000 * 109.46152 * 301.33311 * 20 2 1 22 22 N 1.46494 * 109.46254 * 61.31100 * 20 2 1 23 23 C 1.36942 * 120.00313 * 204.99957 * 22 20 2 24 24 H 1.08007 * 119.99603 * 0.02562 * 23 22 20 25 25 C 1.38806 * 120.00240 * 179.97438 * 23 22 20 26 26 N 1.31621 * 120.00025 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 120.00041 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47233 * 89.99622 * 27 25 23 29 29 H 1.48501 * 109.47189 * 209.99831 * 27 25 23 30 30 H 1.48496 * 109.46748 * 329.99671 * 27 25 23 31 31 H 1.09005 * 109.46592 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46841 * 300.07386 * 1 2 3 33 33 H 1.08999 * 109.47411 * 60.08359 * 1 2 3 34 34 H 1.09001 * 109.58832 * 65.62040 * 4 2 1 35 35 H 1.09007 * 109.70553 * 305.26995 * 4 2 1 36 36 H 1.07999 * 119.63992 * 0.04379 * 9 8 6 37 37 H 1.07998 * 120.01265 * 180.02562 * 10 9 8 38 38 H 1.07996 * 120.89974 * 359.97438 * 12 11 10 39 39 H 1.07994 * 120.02711 * 179.97438 * 13 12 11 40 40 H 1.07998 * 119.14211 * 180.02562 * 14 13 12 41 41 H 1.07993 * 120.23970 * 359.97065 * 17 8 6 42 42 H 1.09001 * 109.58533 * 65.92894 * 18 5 4 43 43 H 1.08999 * 109.59228 * 186.35752 * 18 5 4 44 44 H 1.08990 * 109.63556 * 294.86506 * 19 18 5 45 45 H 1.08997 * 109.45696 * 174.73779 * 19 18 5 46 46 H 0.97003 * 120.00185 * 25.00464 * 22 20 2 47 47 H 0.96998 * 120.00046 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 3.5047 -0.8290 -1.1697 6 6 4.2811 -0.3863 -2.1784 7 8 5.4863 -0.5361 -2.1285 8 6 3.6668 0.2819 -3.3460 9 6 4.1718 1.5173 -3.7871 10 6 3.6233 2.1494 -4.8567 11 6 2.5380 1.5687 -5.5352 12 6 1.9511 2.2026 -6.6473 13 6 0.8998 1.5846 -7.2618 14 6 0.4365 0.3596 -6.7836 15 7 0.9848 -0.2275 -5.7486 16 6 2.0179 0.3236 -5.1023 17 6 2.6025 -0.3170 -3.9973 18 6 4.1052 -1.4317 0.0282 19 6 3.5710 -0.6949 1.2659 20 6 2.0409 -0.7231 1.2482 21 1 1.6583 -0.2245 2.1388 22 7 1.5787 -2.1131 1.2305 23 6 1.4486 -2.8065 2.4042 24 1 1.6863 -2.3284 3.3431 25 6 1.0102 -4.1234 2.3875 26 7 0.8857 -4.7900 3.5156 27 14 0.5985 -4.9502 0.7637 28 1 1.8139 -5.6086 0.2213 29 1 -0.4608 -5.9680 0.9811 30 1 0.1149 -3.9310 -0.2019 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5149 0.8893 33 1 -0.3634 0.5125 -0.8907 34 1 1.7637 -0.1578 -2.1389 35 1 1.6054 -1.7215 -1.3007 36 1 5.0055 1.9688 -3.2699 37 1 4.0209 3.0981 -5.1858 38 1 2.3223 3.1518 -7.0044 39 1 0.4273 2.0447 -8.1170 40 1 -0.3954 -0.1180 -7.2797 41 1 2.2214 -1.2680 -3.6560 42 1 3.8340 -2.4860 0.0818 43 1 5.1897 -1.3331 -0.0176 44 1 3.9159 0.3389 1.2540 45 1 3.9335 -1.1891 2.1672 46 1 1.3650 -2.5425 0.3874 47 1 0.5797 -5.7104 3.5038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036213895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:35 Heat of formation + Delta-G solvation = 22.339888 kcal Electronic energy + Delta-G solvation = -29758.096920 eV Core-core repulsion = 25905.297879 eV Total energy + Delta-G solvation = -3852.799041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.15060 -41.21698 -39.39439 -37.78197 -36.05877 -34.62336 -34.31762 -33.35154 -32.08780 -31.45125 -30.85777 -27.69789 -27.10234 -25.67228 -25.06794 -24.57596 -23.33124 -22.91829 -21.55723 -20.09362 -19.86625 -19.08140 -18.40668 -18.01935 -17.42310 -16.84683 -16.71077 -16.37488 -15.96409 -15.68446 -15.44858 -15.30983 -15.29301 -15.05384 -14.89591 -14.53435 -14.39208 -14.20712 -13.91646 -13.70276 -13.40598 -13.16782 -13.04664 -13.00010 -12.77024 -12.72786 -12.54943 -12.46839 -12.06042 -11.99079 -11.94713 -11.72082 -11.56333 -11.40713 -11.00996 -10.92271 -10.46926 -9.89410 -9.73483 -9.30459 -9.27134 -8.00547 -5.31632 -0.75288 -0.33275 0.87899 1.33579 1.36260 1.37308 1.42691 1.75525 2.02612 2.46965 3.02350 3.11162 3.31648 3.44760 3.53071 3.58418 3.66547 3.81954 3.91320 3.95469 4.00046 4.05457 4.08653 4.19758 4.29567 4.30688 4.37043 4.47759 4.56475 4.62777 4.67267 4.74991 4.85059 4.87443 4.91239 5.00378 5.04130 5.08723 5.10075 5.17704 5.19660 5.24104 5.32564 5.41571 5.49403 5.52864 5.77808 5.81844 6.22404 6.25270 6.89966 6.92602 7.10123 7.86585 8.04646 9.21414 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.003454 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.808121 B = 8104.292426 C = 8997.373692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.101 4.101 3 H 0.097 0.903 4 C 0.105 3.895 5 N -0.593 5.593 6 C 0.556 3.444 7 O -0.573 6.573 8 C -0.107 4.107 9 C -0.092 4.092 10 C -0.077 4.077 11 C -0.104 4.104 12 C -0.056 4.056 13 C -0.164 4.164 14 C 0.128 3.872 15 N -0.510 5.510 16 C 0.100 3.900 17 C -0.073 4.073 18 C 0.123 3.877 19 C -0.138 4.138 20 C 0.178 3.822 21 H 0.054 0.946 22 N -0.742 5.742 23 C -0.213 4.213 24 H 0.062 0.938 25 C -0.060 4.060 26 N -0.984 5.984 27 Si 0.937 3.063 28 H -0.287 1.287 29 H -0.297 1.297 30 H -0.251 1.251 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.141 0.859 37 H 0.176 0.824 38 H 0.178 0.822 39 H 0.178 0.822 40 H 0.185 0.815 41 H 0.130 0.870 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.362 0.638 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.244 20.987 -25.387 32.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.121 4.121 3 H 0.115 0.885 4 C -0.018 4.018 5 N -0.324 5.324 6 C 0.346 3.654 7 O -0.454 6.454 8 C -0.112 4.112 9 C -0.110 4.110 10 C -0.095 4.095 11 C -0.106 4.106 12 C -0.081 4.081 13 C -0.183 4.183 14 C -0.045 4.045 15 N -0.219 5.219 16 C -0.019 4.019 17 C -0.092 4.092 18 C 0.001 3.999 19 C -0.179 4.179 20 C 0.070 3.930 21 H 0.072 0.928 22 N -0.386 5.386 23 C -0.344 4.344 24 H 0.080 0.920 25 C -0.251 4.251 26 N -0.636 5.636 27 Si 0.766 3.234 28 H -0.214 1.214 29 H -0.224 1.224 30 H -0.176 1.176 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.159 0.841 37 H 0.193 0.807 38 H 0.196 0.804 39 H 0.195 0.805 40 H 0.202 0.798 41 H 0.148 0.852 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.196 0.804 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.621 20.037 -24.717 31.825 hybrid contribution 0.075 -0.975 -0.255 1.011 sum 0.696 19.062 -24.972 31.423 Atomic orbital electron populations 1.21646 0.93436 1.01776 1.02378 1.21696 0.96995 0.99898 0.93531 0.88507 1.22185 0.78226 1.01109 1.00249 1.48112 1.07561 1.58835 1.17861 1.18726 0.86030 0.77873 0.82808 1.90749 1.15485 1.59045 1.80103 1.19764 0.97242 0.97602 0.96544 1.20927 0.99840 0.92859 0.97414 1.21265 0.93858 1.00763 0.93631 1.19246 0.97984 0.95237 0.98180 1.21976 0.94051 1.00340 0.91759 1.22387 0.97569 0.96093 1.02247 1.23652 0.97538 0.92774 0.90503 1.68031 1.09337 1.35122 1.09424 1.18802 0.94271 0.93104 0.95773 1.21208 0.93835 0.99857 0.94310 1.21533 0.98229 0.96655 0.83531 1.22435 0.98536 1.00225 0.96697 1.20421 0.91691 0.84160 0.96757 0.92786 1.42799 1.80604 1.10888 1.04295 1.19005 1.34597 0.93905 0.86898 0.92039 1.25309 1.03024 0.97697 0.99104 1.69855 1.55786 1.11051 1.26876 0.85677 0.77536 0.78829 0.81376 1.21357 1.22434 1.17607 0.93972 0.91944 0.91009 0.87414 0.92420 0.84100 0.80715 0.80432 0.80498 0.79785 0.85217 0.92670 0.90011 0.90473 0.92016 0.80388 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 9.06 71.98 0.65 -2.96 16 2 C -0.10 -2.83 2.67 -10.72 -0.03 -2.86 16 3 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.10 2.96 4.31 86.36 0.37 3.33 16 5 N -0.59 -18.53 2.97 -821.41 -2.44 -20.97 16 6 C 0.56 17.60 7.22 86.80 0.63 18.22 16 7 O -0.57 -21.72 16.46 -3.87 -0.06 -21.78 16 8 C -0.11 -2.72 5.02 -20.11 -0.10 -2.82 16 9 C -0.09 -1.81 9.62 22.28 0.21 -1.60 16 10 C -0.08 -1.08 9.74 22.27 0.22 -0.86 16 11 C -0.10 -1.70 5.75 -21.23 -0.12 -1.82 16 12 C -0.06 -0.51 9.89 22.51 0.22 -0.29 16 13 C -0.16 -1.31 10.03 22.16 0.22 -1.09 16 14 C 0.13 1.74 11.15 85.10 0.95 2.68 16 15 N -0.51 -11.27 10.34 -188.65 -1.95 -13.22 16 16 C 0.10 2.26 6.60 40.25 0.27 2.53 16 17 C -0.07 -1.83 7.30 22.85 0.17 -1.66 16 18 C 0.12 4.26 6.19 86.51 0.54 4.79 16 19 C -0.14 -4.64 5.80 30.82 0.18 -4.46 16 20 C 0.18 6.29 2.53 45.02 0.11 6.40 16 21 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 22 N -0.74 -32.69 3.44 -322.82 -1.11 -33.80 16 23 C -0.21 -11.68 10.41 84.03 0.87 -10.81 16 24 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 25 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 26 N -0.98 -63.02 13.97 21.65 0.30 -62.71 16 27 Si 0.94 45.85 27.74 68.60 1.90 47.75 16 28 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 29 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 30 H -0.25 -11.04 6.52 99.48 0.65 -10.39 16 31 H 0.04 1.34 7.53 -2.38 -0.02 1.32 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.11 2.67 4.55 -2.39 -0.01 2.66 16 35 H 0.06 1.82 6.65 -2.38 -0.02 1.81 16 36 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 37 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 38 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 39 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 40 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.13 3.48 7.01 -2.91 -0.02 3.46 16 42 H 0.05 2.17 7.73 -2.39 -0.02 2.15 16 43 H 0.08 2.87 7.02 -2.39 -0.02 2.85 16 44 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.36 15.76 3.79 -92.71 -0.35 15.41 16 47 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -76.66 374.13 3.05 -73.61 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.58 Total: 27.42 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 5.83 Total: 3.70 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -5.19 Total: -130.70 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.06 Total: -21.78 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.90 Total: 47.75 kcal Total: -76.66 3.05 -73.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036213895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.949 kcal (2) G-P(sol) polarization free energy of solvation -76.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds