Wall clock time and date at job start Sat Apr 11 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.49662 * 2 1 4 4 C 1.52770 * 109.58868 * 240.05035 * 2 1 3 5 5 N 1.46915 * 109.00807 * 185.53721 * 4 2 1 6 6 C 1.34780 * 120.63318 * 233.58578 * 5 4 2 7 7 O 1.21593 * 119.99785 * 5.42999 * 6 5 4 8 8 C 1.47562 * 120.00623 * 185.42968 * 6 5 4 9 9 C 1.38707 * 120.43232 * 54.10029 * 8 6 5 10 10 C 1.39000 * 120.75191 * 180.02562 * 9 8 6 11 11 C 1.36342 * 121.19351 * 0.02562 * 10 9 8 12 12 C 1.40361 * 119.92600 * 359.97438 * 11 10 9 13 13 C 1.40681 * 122.10388 * 180.02562 * 12 11 10 14 14 C 1.36259 * 118.66513 * 179.97438 * 13 12 11 15 15 N 1.32511 * 121.84418 * 359.97438 * 14 13 12 16 16 C 1.31315 * 122.71373 * 0.02562 * 15 14 13 17 17 C 1.40132 * 119.92134 * 359.97438 * 16 15 14 18 18 C 1.46922 * 118.74183 * 53.30915 * 5 4 2 19 19 C 1.53197 * 108.77630 * 306.64683 * 18 5 4 20 20 C 1.53033 * 109.31303 * 54.62779 * 19 18 5 21 21 H 1.08996 * 109.46363 * 178.61741 * 20 19 18 22 22 N 1.46498 * 109.45994 * 58.65908 * 20 19 18 23 23 C 1.36947 * 119.99972 * 84.99648 * 22 20 19 24 24 H 1.07996 * 119.99892 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00028 * 180.02562 * 23 22 20 26 26 N 1.31618 * 119.99870 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99973 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47187 * 0.02562 * 27 25 23 29 29 H 1.48498 * 109.47307 * 120.00034 * 27 25 23 30 30 H 1.48498 * 109.46996 * 240.00136 * 27 25 23 31 31 H 1.09000 * 109.46931 * 299.92949 * 1 2 3 32 32 H 1.09003 * 109.47107 * 59.92918 * 1 2 3 33 33 H 1.09000 * 109.47485 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.50767 * 65.65579 * 4 2 1 35 35 H 1.08999 * 109.43089 * 305.37446 * 4 2 1 36 36 H 1.08005 * 119.62845 * 0.04405 * 9 8 6 37 37 H 1.08001 * 119.40742 * 179.97438 * 10 9 8 38 38 H 1.07999 * 120.04110 * 180.02562 * 11 10 9 39 39 H 1.08004 * 120.67151 * 0.02562 * 13 12 11 40 40 H 1.08005 * 119.08080 * 179.97438 * 14 13 12 41 41 H 1.08011 * 120.03900 * 180.02562 * 16 15 14 42 42 H 1.08997 * 109.58936 * 66.42974 * 18 5 4 43 43 H 1.09001 * 109.59433 * 186.85862 * 18 5 4 44 44 H 1.08997 * 109.50190 * 174.58369 * 19 18 5 45 45 H 1.09003 * 109.49274 * 294.67865 * 19 18 5 46 46 H 0.96999 * 120.00541 * 264.99757 * 22 20 19 47 47 H 0.97004 * 120.00285 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0422 -0.7185 -1.2471 5 7 3.5051 -0.8283 -1.1692 6 6 4.2818 -0.3845 -2.1773 7 8 3.7811 0.2011 -3.1180 8 6 5.7398 -0.6090 -2.1395 9 6 6.2495 -1.8874 -1.9675 10 6 7.6217 -2.1064 -1.9304 11 6 8.5050 -1.0761 -2.0608 12 6 8.0321 0.2337 -2.2367 13 6 8.9021 1.3303 -2.3764 14 6 8.3669 2.5721 -2.5442 15 7 7.0571 2.7700 -2.5792 16 6 6.1882 1.7932 -2.4553 17 6 6.6364 0.4773 -2.2783 18 6 4.1059 -1.4256 0.0313 19 6 3.5708 -0.6942 1.2664 20 6 2.0408 -0.7228 1.2484 21 1 1.6577 -0.2244 2.1388 22 7 1.5789 -2.1130 1.2307 23 6 1.4475 -2.8058 2.4047 24 1 1.6839 -2.3272 3.3435 25 6 1.0103 -4.1232 2.3880 26 7 0.7226 -4.7066 1.2437 27 14 0.8303 -5.0679 3.9893 28 1 1.2132 -4.1927 5.1262 29 1 -0.5806 -5.5014 4.1524 30 1 1.7146 -6.2606 3.9625 31 1 -0.3633 0.5127 0.8906 32 1 -0.3633 0.5149 -0.8894 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7652 -0.1495 -2.1346 35 1 1.6031 -1.7149 -1.2975 36 1 5.5727 -2.7224 -1.8615 37 1 7.9949 -3.1108 -1.7950 38 1 9.5674 -1.2675 -2.0296 39 1 9.9728 1.1907 -2.3520 40 1 9.0287 3.4188 -2.6517 41 1 5.1294 2.0037 -2.4907 42 1 3.8386 -2.4808 0.0873 43 1 5.1901 -1.3230 -0.0129 44 1 3.9333 -1.1886 2.1676 45 1 3.9155 0.3399 1.2546 46 1 1.3662 -2.5428 0.3876 47 1 0.4175 -5.6273 1.2319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036241249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:49 Heat of formation + Delta-G solvation = 34.351627 kcal Electronic energy + Delta-G solvation = -29846.670878 eV Core-core repulsion = 25994.392705 eV Total energy + Delta-G solvation = -3852.278173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.27579 -39.86045 -37.85673 -37.28017 -34.36955 -33.33119 -32.67822 -31.47499 -31.41349 -29.99039 -29.21159 -26.49575 -25.36587 -24.41077 -23.77336 -23.53937 -22.88292 -21.70070 -19.91805 -18.52391 -18.16502 -17.40645 -17.33760 -16.97008 -16.40187 -15.89640 -15.12036 -14.82721 -14.64205 -14.62329 -14.30514 -14.24585 -14.01237 -13.87545 -13.48423 -13.33133 -13.07182 -12.73790 -12.58097 -12.38862 -12.16652 -12.15065 -11.69687 -11.61453 -11.41125 -11.21188 -10.96096 -10.82562 -10.53459 -10.52362 -10.36842 -10.19175 -9.87931 -9.77254 -9.61060 -9.58966 -9.34173 -8.98042 -8.35870 -8.22906 -7.02177 -5.83707 -3.12097 -0.00415 0.67976 1.51546 2.60446 2.86466 3.15974 3.37858 3.44676 3.46268 3.86659 4.23060 4.28180 4.47101 4.53519 4.54430 4.65572 4.72902 4.87591 5.08294 5.13735 5.25965 5.31225 5.37585 5.43819 5.49662 5.52781 5.55396 5.68067 5.70075 5.77745 5.81063 5.88813 6.01118 6.02807 6.04728 6.11621 6.19315 6.28840 6.35532 6.38515 6.47136 6.52454 6.58064 6.64932 6.72674 6.88541 6.95499 7.56621 7.65411 7.80731 8.19521 8.34872 9.46754 10.02971 10.38213 11.38700 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.003245 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.916058 B = 8627.638586 C = 9522.451140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.066 0.934 4 C 0.118 3.882 5 N -0.589 5.589 6 C 0.555 3.445 7 O -0.541 6.541 8 C -0.084 4.084 9 C -0.081 4.081 10 C -0.098 4.098 11 C -0.099 4.099 12 C -0.026 4.026 13 C -0.158 4.158 14 C 0.075 3.925 15 N -0.488 5.488 16 C 0.158 3.842 17 C -0.082 4.082 18 C 0.110 3.890 19 C -0.150 4.150 20 C 0.178 3.822 21 H 0.052 0.948 22 N -0.719 5.719 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.153 0.847 41 H 0.167 0.833 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.048 0.952 46 H 0.384 0.616 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.123 8.962 -6.458 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.085 0.915 4 C -0.004 4.004 5 N -0.320 5.320 6 C 0.343 3.657 7 O -0.420 6.420 8 C -0.089 4.089 9 C -0.100 4.100 10 C -0.117 4.117 11 C -0.117 4.117 12 C -0.032 4.032 13 C -0.178 4.178 14 C -0.068 4.068 15 N -0.196 5.196 16 C -0.013 4.013 17 C -0.084 4.084 18 C -0.012 4.012 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.070 0.930 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.170 0.830 41 H 0.184 0.816 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.659 10.109 -6.879 19.089 hybrid contribution 0.267 -1.796 0.864 2.011 sum 14.926 8.312 -6.015 18.112 Atomic orbital electron populations 1.21663 0.94071 1.03212 1.00535 1.21630 0.96624 0.98968 0.95656 0.91530 1.21639 0.77944 1.01853 0.98950 1.48088 1.07258 1.58887 1.17744 1.18144 0.85792 0.78986 0.82818 1.90789 1.74760 1.41976 1.34490 1.19907 0.93203 0.93848 1.01925 1.21486 0.96025 0.96164 0.96327 1.20948 0.92676 0.99857 0.98192 1.21099 1.00282 0.91181 0.99162 1.18108 0.92131 0.94595 0.98335 1.21888 1.00430 0.93043 1.02433 1.22249 0.91488 0.96584 0.96463 1.67521 1.03407 1.35996 1.12644 1.23371 1.00110 0.86915 0.90907 1.18738 0.92810 0.94854 1.02027 1.21882 0.96763 0.99049 0.83554 1.22524 1.00494 0.98686 0.97361 1.20216 0.90707 0.87363 0.94916 0.93037 1.42483 1.79003 1.07683 1.06936 1.19264 1.37108 0.93821 0.86580 0.91201 1.24697 1.02276 0.97190 0.96593 1.69654 1.51840 1.12967 1.23588 0.86175 0.77310 0.79957 0.83072 1.20636 1.21975 1.21985 0.92755 0.93685 0.91020 0.89523 0.90333 0.84392 0.84669 0.84764 0.84346 0.82969 0.81561 0.89449 0.91008 0.90645 0.93307 0.78115 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.06 37.16 0.34 -1.80 16 2 C -0.11 -1.73 2.65 -90.72 -0.24 -1.97 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.92 5.41 -3.93 -0.02 1.89 16 5 N -0.59 -9.20 2.98 -174.25 -0.52 -9.72 16 6 C 0.56 8.81 6.48 -12.46 -0.08 8.72 16 7 O -0.54 -9.91 15.20 5.28 0.08 -9.83 16 8 C -0.08 -1.15 4.63 -104.67 -0.48 -1.63 16 9 C -0.08 -0.94 7.76 -39.13 -0.30 -1.24 16 10 C -0.10 -0.90 9.93 -39.98 -0.40 -1.30 16 11 C -0.10 -0.89 9.79 -39.47 -0.39 -1.28 16 12 C -0.03 -0.30 5.74 -106.84 -0.61 -0.91 16 13 C -0.16 -1.50 9.88 -39.37 -0.39 -1.89 16 14 C 0.08 0.80 11.07 -17.97 -0.20 0.60 16 15 N -0.49 -6.60 10.30 -13.21 -0.14 -6.74 16 16 C 0.16 2.23 10.49 -17.06 -0.18 2.05 16 17 C -0.08 -1.10 5.76 -106.59 -0.61 -1.71 16 18 C 0.11 1.68 5.33 -3.71 -0.02 1.66 16 19 C -0.15 -2.42 5.78 -26.61 -0.15 -2.57 16 20 C 0.18 3.22 2.53 -67.90 -0.17 3.05 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -15.93 3.64 -53.39 -0.19 -16.13 16 23 C -0.24 -6.00 9.93 -15.05 -0.15 -6.15 16 24 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 26 N -0.93 -26.37 13.06 55.49 0.72 -25.64 16 27 Si 0.90 21.34 29.55 -169.99 -5.02 16.31 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.30 7.54 -51.93 -0.39 0.90 16 34 H 0.09 1.40 7.00 -51.93 -0.36 1.04 16 35 H 0.08 1.40 6.64 -51.93 -0.34 1.05 16 36 H 0.14 1.54 7.75 -52.48 -0.41 1.13 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 40 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.17 2.46 6.50 -52.48 -0.34 2.11 16 42 H 0.09 1.54 7.74 -51.93 -0.40 1.14 16 43 H 0.07 0.98 5.39 -51.93 -0.28 0.70 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.38 9.10 5.94 -40.82 -0.24 8.86 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 375.42 15.07 5.66 5.66 Total: -1.00 -30.28 375.42 -10.12 -40.40 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.54 Total: 10.57 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -4.16 Total: -4.88 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.12 Total: -58.23 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.28 -10.12 -40.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036241249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.749 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds