Wall clock time and date at job start Sat Apr 11 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.70206 * 2 1 4 4 C 1.53187 * 109.58907 * 120.36132 * 2 1 3 5 5 C 1.53037 * 109.31619 * 65.14835 * 4 2 1 6 6 H 1.09004 * 109.45079 * 301.35916 * 5 4 2 7 7 N 1.46498 * 109.46456 * 181.38992 * 5 4 2 8 8 C 1.36932 * 120.00201 * 154.93566 * 7 5 4 9 9 H 1.08004 * 119.99952 * 359.71430 * 8 7 5 10 10 C 1.38807 * 120.00314 * 180.02562 * 8 7 5 11 11 N 1.31624 * 119.99655 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00452 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47114 * 59.99380 * 12 10 8 14 14 H 1.48498 * 109.47192 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.46870 * 299.99775 * 12 10 8 16 16 C 1.53049 * 109.53720 * 61.36419 * 5 4 2 17 17 C 1.53192 * 109.31388 * 298.63887 * 16 5 4 18 18 N 1.46921 * 109.58462 * 239.65080 * 2 1 3 19 19 C 1.34781 * 120.63421 * 113.84477 * 18 2 1 20 20 O 1.21605 * 120.00340 * 175.03345 * 19 18 2 21 21 C 1.47430 * 119.99871 * 355.03201 * 19 18 2 22 22 C 1.38752 * 120.33333 * 310.36079 * 21 19 18 23 23 C 1.38866 * 120.72480 * 179.69323 * 22 21 19 24 24 C 1.36350 * 121.05545 * 0.60946 * 23 22 21 25 25 C 1.40434 * 120.08742 * 359.67310 * 24 23 22 26 26 C 1.40806 * 121.26300 * 180.02562 * 25 24 23 27 27 C 1.36633 * 118.15189 * 180.02562 * 26 25 24 28 28 C 1.39225 * 119.91067 * 359.97438 * 27 26 25 29 29 N 1.31225 * 121.69836 * 0.02562 * 28 27 26 30 30 C 1.33358 * 121.35254 * 359.97438 * 29 28 27 31 31 H 1.08991 * 109.47426 * 180.35090 * 1 2 3 32 32 H 1.09006 * 109.46830 * 300.35011 * 1 2 3 33 33 H 1.08996 * 109.47296 * 60.34814 * 1 2 3 34 34 H 1.09004 * 109.49494 * 305.20167 * 4 2 1 35 35 H 1.08999 * 109.49984 * 185.10323 * 4 2 1 36 36 H 0.96997 * 119.99268 * 334.92933 * 7 5 4 37 37 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.49269 * 58.58517 * 16 5 4 39 39 H 1.08998 * 109.49414 * 178.68711 * 16 5 4 40 40 H 1.08994 * 109.58676 * 174.41482 * 17 16 5 41 41 H 1.08997 * 109.58632 * 294.70972 * 17 16 5 42 42 H 1.08004 * 119.63200 * 359.97438 * 22 21 19 43 43 H 1.08000 * 119.46793 * 180.33092 * 23 22 21 44 44 H 1.07998 * 119.95196 * 179.70106 * 24 23 22 45 45 H 1.08004 * 120.92560 * 0.02562 * 26 25 24 46 46 H 1.08001 * 120.04422 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.15569 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 1.6415 -2.2041 1.1700 6 1 0.5565 -2.2814 1.0990 7 7 2.1023 -2.8979 2.3752 8 6 1.4641 -4.0333 2.7979 9 1 0.6181 -4.4148 2.2454 10 6 1.9004 -4.6904 3.9401 11 7 2.9280 -4.2223 4.6166 12 14 1.0294 -6.2389 4.5172 13 1 1.1062 -7.2747 3.4560 14 1 1.6841 -6.7447 5.7504 15 1 -0.3942 -5.9284 4.8037 16 6 2.2800 -2.8464 -0.0638 17 6 1.7691 -2.1409 -1.3240 18 7 2.0225 -0.6994 -1.1945 19 6 2.6944 -0.0316 -2.1532 20 8 3.1751 -0.6362 -3.0924 21 6 2.8466 1.4321 -2.0633 22 6 1.7427 2.2380 -1.8238 23 6 1.8778 3.6170 -1.7313 24 6 3.0926 4.2166 -1.8848 25 6 4.2351 3.4390 -2.1343 26 6 5.5018 4.0322 -2.2963 27 6 6.5702 3.2153 -2.5372 28 6 6.3868 1.8374 -2.6153 29 7 5.2042 1.2895 -2.4635 30 6 4.1213 2.0308 -2.2263 31 1 -0.3634 -1.0275 0.0063 32 1 -0.3633 0.5193 0.8869 33 1 -0.3634 0.5084 -0.8930 34 1 1.6075 -0.2786 2.1368 35 1 3.1297 -0.6504 1.2912 36 1 2.8596 -2.5530 2.8736 37 1 3.2326 -4.6813 5.4150 38 1 3.3639 -2.7474 -0.0056 39 1 2.0121 -3.9022 -0.1040 40 1 2.2943 -2.5273 -2.1974 41 1 0.6991 -2.3175 -1.4332 42 1 0.7686 1.7874 -1.7037 43 1 1.0058 4.2244 -1.5390 44 1 3.1764 5.2910 -1.8141 45 1 5.6254 5.1033 -2.2320 46 1 7.5556 3.6379 -2.6668 47 1 7.2398 1.2031 -2.8067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044663533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:07 Heat of formation + Delta-G solvation = 39.367150 kcal Electronic energy + Delta-G solvation = -29572.564125 eV Core-core repulsion = 25720.503442 eV Total energy + Delta-G solvation = -3852.060684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28632 -39.90294 -37.55503 -37.15706 -34.58231 -33.73184 -32.05632 -31.90140 -30.82084 -30.50642 -29.11771 -27.40196 -24.94534 -24.32677 -23.79439 -23.54161 -22.35744 -21.85227 -20.35032 -18.76736 -18.42974 -17.54579 -17.15177 -16.78091 -16.49329 -15.59281 -15.19638 -14.96020 -14.84700 -14.41539 -14.21664 -14.10943 -14.01541 -13.53142 -13.49551 -13.32473 -13.22492 -12.83520 -12.78851 -12.53997 -12.29924 -12.06252 -11.74659 -11.62298 -11.42629 -11.30188 -10.87939 -10.85275 -10.73142 -10.72776 -10.35882 -10.21283 -9.94424 -9.71362 -9.63631 -9.40566 -9.05173 -8.87105 -8.52200 -8.35935 -6.94953 -5.75416 -3.04309 -0.03809 0.54631 1.57129 2.54982 2.89678 3.19140 3.44442 3.49064 3.49887 3.88419 4.03289 4.21567 4.45644 4.46981 4.59222 4.60914 4.66944 4.80680 4.90377 4.99884 5.08553 5.17395 5.26589 5.33598 5.45109 5.57719 5.59610 5.61144 5.65822 5.70966 5.76535 5.78896 5.86076 5.90851 5.93365 6.01102 6.04302 6.19428 6.23814 6.28268 6.40721 6.50346 6.52341 6.62557 6.69025 6.99112 7.11822 7.59021 7.69888 7.77893 8.35785 8.42989 9.53976 10.11949 10.46629 11.47180 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.002799 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.690481 B = 9999.397279 C =10355.358532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.131 3.869 3 H 0.088 0.912 4 C -0.133 4.133 5 C 0.180 3.820 6 H 0.051 0.949 7 N -0.724 5.724 8 C -0.238 4.238 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.933 5.933 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.150 4.150 17 C 0.114 3.886 18 N -0.596 5.596 19 C 0.566 3.434 20 O -0.521 6.521 21 C -0.095 4.095 22 C -0.071 4.071 23 C -0.122 4.122 24 C -0.079 4.079 25 C -0.109 4.109 26 C -0.058 4.058 27 C -0.175 4.175 28 C 0.135 3.865 29 N -0.454 5.454 30 C 0.159 3.841 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.140 0.860 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.460 21.661 -14.510 26.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.028 3.972 3 H 0.106 0.894 4 C -0.172 4.172 5 C 0.070 3.930 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.581 5.581 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.191 4.191 17 C -0.008 4.008 18 N -0.329 5.329 19 C 0.353 3.647 20 O -0.397 6.397 21 C -0.099 4.099 22 C -0.091 4.091 23 C -0.139 4.139 24 C -0.098 4.098 25 C -0.111 4.111 26 C -0.084 4.084 27 C -0.195 4.195 28 C -0.037 4.037 29 N -0.161 5.161 30 C 0.037 3.963 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.157 0.843 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.158 0.842 46 H 0.156 0.844 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.397 20.223 -14.989 25.175 hybrid contribution 0.053 0.159 0.690 0.711 sum 0.450 20.382 -14.299 24.901 Atomic orbital electron populations 1.22246 0.94868 1.03504 1.01728 1.21452 0.94398 0.96427 0.84970 0.89401 1.22200 1.01360 0.97557 0.96104 1.20197 0.96714 0.88956 0.87146 0.93126 1.42421 1.37898 1.29396 1.26717 1.19182 1.10005 1.01282 1.06488 0.91245 1.24738 0.98520 0.99457 0.98214 1.69657 1.27590 1.41402 1.19490 0.86287 0.78778 0.83326 0.77912 1.21276 1.21740 1.21304 1.22660 1.01321 1.00410 0.94697 1.21682 1.00304 0.78697 1.00130 1.48130 1.55180 1.09636 1.19990 1.17871 0.78012 0.86147 0.82659 1.90779 1.46874 1.68687 1.33350 1.19855 0.92424 0.94238 1.03352 1.21565 0.98417 0.93739 0.95380 1.20840 0.98101 0.94365 1.00638 1.21121 0.91640 0.99788 0.97235 1.18798 0.95142 0.93855 1.03276 1.21467 0.91290 1.00422 0.95197 1.21941 1.00276 0.95154 1.02118 1.23111 0.94970 0.92927 0.92731 1.68121 0.98433 1.39088 1.10457 1.18560 0.92145 0.88976 0.96652 0.91079 0.91073 0.92826 0.90554 0.91880 0.78334 0.93491 0.92235 0.90752 0.89632 0.91764 0.84269 0.84724 0.84886 0.84222 0.84356 0.82222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 8.76 37.16 0.33 -1.52 16 2 C 0.13 1.76 2.39 -67.60 -0.16 1.60 16 3 H 0.09 1.08 5.14 -51.93 -0.27 0.81 16 4 C -0.13 -2.19 5.02 -26.62 -0.13 -2.33 16 5 C 0.18 3.50 2.52 -67.89 -0.17 3.33 16 6 H 0.05 0.98 6.43 -51.93 -0.33 0.65 16 7 N -0.72 -18.03 5.12 -53.38 -0.27 -18.30 16 8 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 9 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 11 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 12 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 C -0.15 -2.80 5.66 -26.61 -0.15 -2.95 16 17 C 0.11 1.83 6.02 -3.71 -0.02 1.81 16 18 N -0.60 -9.14 2.68 -166.48 -0.45 -9.58 16 19 C 0.57 9.47 6.94 -12.52 -0.09 9.38 16 20 O -0.52 -10.50 15.98 5.27 0.08 -10.42 16 21 C -0.09 -1.33 4.83 -104.61 -0.51 -1.84 16 22 C -0.07 -0.73 7.53 -39.16 -0.29 -1.03 16 23 C -0.12 -0.96 9.93 -40.03 -0.40 -1.36 16 24 C -0.08 -0.63 9.75 -39.44 -0.38 -1.02 16 25 C -0.11 -1.15 5.74 -106.83 -0.61 -1.77 16 26 C -0.06 -0.47 9.90 -39.19 -0.39 -0.86 16 27 C -0.18 -1.43 10.03 -39.79 -0.40 -1.83 16 28 C 0.14 1.50 11.15 -17.44 -0.19 1.31 16 29 N -0.45 -6.93 9.41 -10.77 -0.10 -7.04 16 30 C 0.16 2.25 6.59 -84.58 -0.56 1.70 16 31 H 0.07 0.88 5.73 -51.93 -0.30 0.58 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.50 6.54 -51.93 -0.34 0.16 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.09 1.45 6.99 -51.93 -0.36 1.09 16 41 H 0.06 0.92 7.51 -51.93 -0.39 0.53 16 42 H 0.14 1.23 5.59 -52.48 -0.29 0.94 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 46 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -35.44 374.18 -10.15 -45.59 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.38 Total: 8.81 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -4.38 Total: -4.54 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.10 Total: -62.44 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.44 -10.15 -45.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044663533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.957 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds